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jfr Lin [54 articles]

最近 jfr さんのライブラリに追加された論文の中から 著者が Lin. であるものをリストアップしています. You can also see everyone's Lin.
  • Estimation and testing for the effect of a genetic pathway on a disease outcome using logistic kernel machine regression via logistic mixed models
    BMC Bioinformatics, Vol. 9 (24 June 2008), 292.
    by Dawei Liu, Debashis Ghosh, Xihong Lin
    posted to pathway_analysis by jfr on 2008-09-26 16:19:49 as *** along with 2 people dolchan ptrobajo
  • Alignment and classification of time series gene expression in clinical studies.
    Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008)
    by TH Lin, N Kaminski, Z Bar-Joseph
    posted to no-tag by jfr on 2008-09-26 10:55:18 as **** along with 1 person bertelsen
  • lumi: a pipeline for processing Illumina microarray.
    Bioinformatics (Oxford, England) (8 May 2008)
    by Pan Du, Warren A A Kibbe, Simon M M Lin
    posted to software illumina bioconductor by jfr on 2008-09-24 13:31:18 as ** along with 3 people heliopais jyuh Stew
  • Circulating microRNAs as stable blood-based markers for cancer detection.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 30. (29 July 2008), pp. 10513-10518.
    posted to serum mirna marker by jfr on 2008-09-16 09:21:34 as read along with 3 people giovenko fpattyn calvin
  • Hubba: hub objects analyzer--a framework of interactome hubs identification for network biology.
    Nucleic acids research, Vol. 36, No. Web Server issue. (1 July 2008)
    by CY Lin, CH Chin, HH Wu, SH Chen, CW Ho, MT Ko
    posted to software network by jfr on 2008-09-15 12:32:19 as *** along with 1 person jyuh
  • Integration of Ranked Lists via Cross Entropy Monte Carlo with Applications to mRNA and microRNA Studies.
    Biometrics (12 May 2008)
    by Shili Lin, Jie Ding
    posted to mirna_target methodology gene_lists by jfr on 2008-09-04 10:35:55 as *****
  • Integrated genetic and epigenetic analysis identifies three different subclasses of colon cancer
    Proceedings of the National Academy of Sciences, Vol. 104, No. 47. (20 November 2007), pp. 18654-18659.
    by Lanlan Shen, Minoru Toyota, Yutaka Kondo, E Lin, Li Zhang, Yi Guo, Natalie S Hernandez, Xinli Chen, Saira Ahmed, Kazuo Konishi, Stanley R Hamilton, Jean-Pierre J Issa
  • dChipSNP: significance curve and clustering of SNP-array-based loss-of-heterozygosity data
    Bioinformatics, Vol. 20, No. 8. (22 May 2004), pp. 1233-1240.
    by Ming Lin, Lee-Jen Wei, William R Sellers, Marshall Lieberfarb, Wing H Wong, Cheng Li
    posted to loh snp-arrays software by jfr on 2008-08-04 18:09:43 as read along with 1 person cpnP
  • Reproducibility Probability Score—incorporating measurement variability across laboratories for gene selection
    Nature Biotechnology, Vol. 24, No. 12., pp. 1476-1477.
    by Guixian Lin, Xuming He, Hanlee Ji, Leming Shi, Ronald W Davis, Sheng Zhong
    posted to maqc reproducible_research by jfr on 2008-07-28 11:37:33 as read along with 2 people jyuh cberry
  • Cross-generation and cross-laboratory predictions of Affymetrix microarrays by rank-based methods.
    Journal of biomedical informatics, Vol. 41, No. 4. (August 2008), pp. 570-579.
    by HC Liu, CY Chen, YT Liu, CB Chu, DC Liang, LY Shih, CJ Lin
    posted to meta-analysis platform_comparison by jfr on 2008-07-17 14:05:53 as **
  • MPDA: Microarray pooled DNA analyzer
    BMC Bioinformatics, Vol. 9 (15 April 2008), 196.
    by Hsin-Chou Yang, Mei-Chu Huang, Ling-Hui Li, Chien-Hsing Lin, Alice LT Yu, Mitchell B Diccianni, Jer-Yuan Wu, Yuan-Tsong Chen, Cathy SJ Fann
    posted to pooling by jfr on 2008-06-17 17:22:51 as ** along with 1 person jyuh
  • Validation and extension of an empirical Bayes method for SNP calling on Affymetrix microarrays
    Genome Biology, Vol. 9 (03 April 2008), R63.
    by Shin Lin, Benilton Carvalho, David J Cutler, Dan E Arking, Aravinda Chakravarti, Rafael A Irizarry
  • Novel blood-based, five-gene biomarker set for the detection of colorectal cancer.
    Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 14, No. 2. (15 January 2008), pp. 455-460.
    by M Han, CT Liew, HW Zhang, S Chao, R Zheng, KT Yip, ZY Song, HM Li, XP Geng, LX Zhu, JJ Lin, KW Marshall, CC Liew
    posted to classification colon_cancer diagnostic gene_expression by jfr on 2008-04-21 09:26:30 as **
  • Model-based variance-stabilizing transformation for Illumina microarray data
    Nucl. Acids Res. (4 January 2008), gkm1075.
    by Simon M Lin, Pan Du, Wolfgang Huber, Warren A Kibbe
    posted to illumina normalization by jfr on 2008-04-14 16:04:25 as ** along with 2 people neveaire jyuh
  • A Mammalian microRNA Expression Atlas Based on Small RNA Library Sequencing.
    Cell, Vol. 129, No. 7. (29 June 2007), pp. 1401-1414.
  • Characterizing the cancer genome in lung adenocarcinoma
    Nature (04 November 2007)
    by Barbara A Weir, Michele S Woo, Gad Getz, Sven Perner, Li Ding, Rameen Beroukhim, William M Lin, Michael A Province, Aldi Kraja, Laura A Johnson, Kinjal Shah, Mitsuo Sato, Roman K Thomas, Justine A Barletta, Ingrid B Borecki, Stephen Broderick, Andrew C Chang, Derek Y Chiang, Lucian R Chirieac, Jeonghee Cho, Yoshitaka Fujii, Adi F Gazdar, Thomas Giordano, Heidi Greulich, Megan Hanna, Bruce E Johnson, Mark G Kris, Alex Lash, Ling Lin, Neal Lindeman, Elaine R Mardis, John D Mcpherson, John D Minna, Margaret B Morgan, Mark Nadel, Mark B Orringer, John R Osborne, Brad Ozenberger, Alex H Ramos, James Robinson, Jack A Roth, Valerie Rusch, Hidefumi Sasaki, Frances Shepherd, Carrie Sougnez, Margaret R Spitz, Ming-Sound Tsao, David Twomey, Roel GW Verhaak, George M Weinstock, David A Wheeler, Wendy Winckler, Akihiko Yoshizawa, Soyoung Yu, Maureen F Zakowski, Qunyuan Zhang, David G Beer, Ignacio I Wistuba, Mark A Watson, Levi A Garraway, Marc Ladanyi, William D Travis, William Pao, Mark A Rubin, Stacey B Gabriel, Richard A Gibbs, Harold E Varmus, Richard K Wilson, Eric S Lander, Matthew Meyerson
  • Relationship between genetic alterations and prognosis in sporadic colorectal cancer
    International Journal of Cancer, Vol. 118, No. 7. (2006), pp. 1721-1727.
    by Shih-Ching Chang, Jen-Kou Lin, Shung H Yang, Huann-Sheng Wang, Anna F Li, Chin-Wen Chi
    posted to colon_cancer mutations prognosis by jfr on 2008-02-08 14:12:17 as **** along with 1 person cpnP
  • Reproducibility of microarray data: a further analysis of microarray quality control (MAQC)data
    BMC Bioinformatics, Vol. 8 (25 October 2007), 412.
    by James Chen, Huey-Miin Hsueh, Robert Delongchamp, Chien-Ju Lin, Chen-An Tsai
  • High-throughput oncogene mutation profiling in human cancer
    Nature Genetics, Vol. 39, No. 3. (11 February 2007), pp. 347-351.
    by Roman K Thomas, Alissa C Baker, Ralph M Debiasi, Wendy Winckler, Thomas Laframboise, William M Lin, Meng Wang, Whei Feng, Thomas Zander, Laura E Macconnaill, Jeffrey C Lee, Rick Nicoletti, Charlie Hatton, Mary Goyette, Luc Girard, Kuntal Majmudar, Liuda Ziaugra, Kwok-Kin Wong, Stacey Gabriel, Rameen Beroukhim, Michael Peyton, Jordi Barretina, Amit Dutt, Caroline Emery, Heidi Greulich, Kinjal Shah, Hidefumi Sasaki, Adi Gazdar, John Minna, Scott A Armstrong, Ingo K Mellinghoff, Stephen F Hodi, Glenn Dranoff, Paul S Mischel, Tim F Cloughesy, Stan F Nelson, Linda M Liau, Kirsten Mertz, Mark A Rubin, Holger Moch, Massimo Loda, William Catalona, Jonathan Fletcher, Sabina Signoretti, Frederic Kaye, Kenneth C Anderson, George D Demetri, Reinhard Dummer, Stephan Wagner, Meenhard Herlyn, William R Sellers, Matthew Meyerson, Levi A Garraway
  • The Genomic Landscapes of Human Breast and Colorectal Cancers.
    Science (11 October 2007)
    by Laura D D Wood, D Williams W Parsons, Siân Jones, Jimmy Lin, Tobias Sjöblom, Rebecca J J Leary, Dong Shen, Simina M M Boca, Thomas Barber, Janine Ptak, Natalie Silliman, Steve Szabo, Zoltan Dezso, Vadim Ustyanksky, Tatiana Nikolskaya, Yuri Nikolsky, Rachel Karchin, Paul A A Wilson, Joshua S S Kaminker, Zemin Zhang, Randal Croshaw, Joseph Willis, Dawn Dawson, Michail Shipitsin, James K V K Willson, Saraswati Sukumar, Kornelia Polyak, Ben Ho H Park, Charit L L Pethiyagoda, P V Krishna V Pant, Dennis G G Ballinger, Andrew B B Sparks, James Hartigan, Douglas R R Smith, Erick Suh, Nickolas Papadopoulos, Phillip Buckhaults, Sanford D D Markowitz, Giovanni Parmigiani, Kenneth W W Kinzler, Victor E E Velculescu, Bert Vogelstein
  • Derivation of stable microarray cancer-differentiating signatures using consensus scoring of multiple random sampling and gene-ranking consistency evaluation.
    Cancer Res, Vol. 67, No. 20. (15 October 2007), pp. 9996-10003.
    by ZQ Tang, LY Han, HH Lin, J Cui, J Jia, BC Low, BW Li, YZ Chen
    posted to classification by jfr on 2007-12-17 12:18:14 as *** along with 2 people frohike ptrobajo
  • MicroRNA expression profiles for the NCI-60 cancer cell panel
    Mol Cancer Ther, Vol. 6, No. 5. (1 May 2007), pp. 1483-1491.
    by Paul E Blower, Joseph S Verducci, Shili Lin, Jin Zhou, Ji-Hyun Chung, Zunyan Dai, Chang-Gong Liu, William Reinhold, Philip L Lorenzi, Eric P Kaldjian, Carlo M Croce, John N Weinstein, Wolfgang Sadee
    posted to mirna nci60 by jfr on 2007-12-17 12:10:12 as **** along with 1 person elzodw
  • Thirty-gene pharmacogenomic test correlates with residual cancer burden after preoperative chemotherapy for breast cancer.
    Clin Cancer Res, Vol. 13, No. 14. (15 July 2007), pp. 4078-4082.
    posted to breast_cancer therapy by jfr on 2007-12-06 08:52:59 as ***
  • A multidimensional analysis of genes mutated in breast and colorectal cancers
    Genome Res. (10 August 2007), gr.6431107.
    by Jimmy Lin, Christine M Gan, Xiaosong Zhang, Sian Jones, Tobias Sjoblom, Laura D Wood, Williams D Parsons, Nickolas Papadopoulos, Kenneth W Kinzler, Bert Vogelstein, Giovanni Parmigiani, Victor E Velculescu
  • Selecting dissimilar genes for multi-class classification, an application in cancer subtyping
    BMC Bioinformatics, Vol. 8 (16 June 2007), 206.
    by Zhipeng Cai, Randy Goebel, Mohammad R Salavatipour, Guohui Lin
    posted to feature_selection by jfr on 2007-12-03 10:59:43 as *** along with 2 people shigepong fmenolascina
  • nuID: A universal naming schema of oligonucleotides for Illumina, Affymetrix, and other microarrays
    Biology Direct, Vol. 2 (31 May 2007), 16.
    by Pan Du, Warren A Kibbe, Simon M Lin
    posted to annotation software by jfr on 2007-11-28 12:04:04 as ** along with 2 people heliopais jyuh
  • Novel estrogen receptor-alpha binding sites and estradiol target genes identified by chromatin immunoprecipitation cloning in breast cancer.
    Cancer Res, Vol. 67, No. 10. (15 May 2007), pp. 5017-5024.
    by Z Lin, S Reierstad, CC Huang, SE Bulun
    posted to breast_cancer estrogen by jfr on 2007-11-23 15:57:09 as *
  • Whole-genome cartography of estrogen receptor alpha binding sites.
    PLoS Genet, Vol. 3, No. 6. (June 2007)
    by CY Lin, VB Vega, JS Thomsen, T Zhang, SL Kong, M Xie, KP Chiu, L Lipovich, DH Barnett, F Stossi, A Yeo, J George, VA Kuznetsov, YK Lee, TH Charn, N Palanisamy, LD Miller, E Cheung, BS Katzenellenbogen, Y Ruan, G Bourque, CL Wei, ET Liu
  • Including probe-level uncertainty in model-based gene expression clustering
    BMC Bioinformatics, Vol. 8 (21 March 2007), 98.
    by Xuejun Liu, Kevin K Lin, Bogi Andersen, Magnus Rattray
    posted to clustering by jfr on 2007-07-05 10:59:30 as ** along with 1 person ghattem
  • Determination of oestrogen-receptor status and ERBB2 status of breast carcinoma: a gene-expression profiling study.
    Lancet Oncol, Vol. 8, No. 3. (March 2007), pp. 203-211.
    by Y Gong, K Yan, F Lin, K Anderson, C Sotiriou, F Andre, FA Holmes, V Valero, D Booser, JE Pippen, S Vukelja, H Gomez, J Mejia, LJ Barajas, KR Hess, N Sneige, GN Hortobagyi, L Pusztai, WF Symmans
    posted to breast_cancer erbb estrogen markers by jfr on 2007-06-26 14:16:34 as read
  • Cell type and culture condition-dependent alternative splicing in human breast cancer cells revealed by splicing-sensitive microarrays.
    Cancer Res, Vol. 66, No. 4. (15 February 2006), pp. 1990-1999.
    by C Li, M Kato, L Shiue, JE Shively, M Ares, RJ Lin
    posted to alternative_splicing breast_cancer by jfr on 2007-06-08 16:11:05 as *** along with 1 person tabu
  • Heritable clustering and pathway discovery in breast cancer integrating epigenetic and phenotypic data
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Zailong Wang, Pearlly Yan, Dustin Potter, Charis Eng, Tim Huang, Shili Lin
  • Multiple gene expression classifiers from different array platforms predict poor prognosis of colorectal cancer.
    Clin Cancer Res, Vol. 13, No. 2 Pt 1. (15 January 2007), pp. 498-507.
    posted to classification colon_cancer by jfr on 2007-05-14 14:08:59 as read
  • Hormone-replacement therapy influences gene expression profiles and is associated with breast-cancer prognosis: a cohort study
    BMC Medicine, Vol. 4 (30 June 2006), 16.
    by Per Hall, Alexander Ploner, Judith Bjöhle, Fei Huang, Chin-Yo Lin, Edison T Liu, Lance D Miller, Hans Nordgren, Yudi Pawitan, Peter Shaw, Lambert Skoog, Johanna Smeds, Sara Wedrén, John Öhd, Jonas Bergh
    posted to breast_cancer by jfr on 2007-05-10 17:54:06 as **
  • Gene expression preferentially regulated by tamoxifen in breast cancer cells and correlations with clinical outcome.
    Cancer Res, Vol. 66, No. 14. (15 July 2006), pp. 7334-7340.
    by J Frasor, EC Chang, B Komm, CY Lin, VB Vega, ET Liu, LD Miller, J Smeds, J Bergh, BS Katzenellenbogen
    posted to breast_cancer tamoxifen by jfr on 2007-05-10 17:51:09 as **
  • Effective similarity measures for expression profiles.
    Bioinformatics, Vol. 22, No. 13. (1 July 2006), pp. 1616-1622.
    by G Yona, W Dirks, S Rahman, DM Lin
    posted to no-tag by jfr on 2007-03-23 14:37:56 as ***
  • Prevention of Brca1-mediated mammary tumorigenesis in mice by a progesterone antagonist.
    Science, Vol. 314, No. 5804. (1 December 2006), pp. 1467-1470.
    by AJ Poole, Y Li, Y Kim, SC Lin, WH Lee, EY Lee
    posted to brca breast_cancer by jfr on 2007-03-01 11:48:08 as **
  • Loss of heterozygosity and its correlation with expression profiles in subclasses of invasive breast cancers.
    Cancer Res, Vol. 64, No. 1. (1 January 2004), pp. 64-71.
    by ZC Wang, M Lin, LJ Wei, C Li, A Miron, G Lodeiro, L Harris, S Ramaswamy, DM Tanenbaum, M Meyerson, JD Iglehart, A Richardson
    posted to breast_cancer class_discovery copy-number integration by jfr on 2007-01-19 14:14:43 as read
  • Discovery of estrogen receptor alpha target genes and response elements in breast tumor cells.
    Genome Biol, Vol. 5, No. 9. (2004)
    by CY Lin, A Ström, VB Vega, SL Kong, AL Yeo, JS Thomsen, WC Chan, B Doray, DK Bangarusamy, A Ramasamy, LA Vergara, S Tang, A Chong, VB Bajic, LD Miller, JA Gustafsson, ET Liu
    posted to estrogen breast_cancer by jfr on 2007-01-18 09:51:00 as ***
  • Classification methods for the development of genomic signatures form high-dimensional data
    Genome Biology, Vol. 7 (20 December 2006), R121.
    by Hojin Moon, Hongshik Ahn, Ralph L Kodell, Chien-Ju Lin, Songjoon Baek, James J Chen
    posted to methodology classification by jfr on 2007-01-16 18:23:09 as ***
  • BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinities.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by T Liu, Y Lin, X Wen, RN Jorissen, MK Gilson
    posted to software by jfr on 2007-01-12 17:17:40 as * along with 1 person massivemayhem
  • Gene selection using support vector machines with non-convex penalty.
    Bioinformatics, Vol. 22, No. 1. (1 January 2006), pp. 88-95.
    by HH Zhang, J Ahn, X Lin, C Park
    posted to feature_selection classification by jfr on 2007-01-12 13:48:06 as ** along with 1 person chad_davis
  • Computational analysis of tissue-specific combinatorial gene regulation: predicting interaction between transcription factors in human tissues.
    Nucleic Acids Res (18 September 2006)
    by Xueping Yu, Jimmy Lin, Donald J J Zack, Jiang Qian
  • CRSD: a comprehensive web server for composite regulatory signature discovery.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by CC Liu, CC Lin, WS Chen, HY Chen, PC Chang, JJ Chen, PC Yang
    posted to software by jfr on 2007-01-11 13:48:26 as *
  • Bioinformatic discovery of microRNA precursors from human ESTs and introns
    BMC Genomics, Vol. 7 (03 July 2006), 164.
    by Sung-Chou Li, Chao-Yu Pan, Wen-Chang Lin
    posted to mirna by jfr on 2007-01-10 16:08:16 as ** along with 2 people and 1 group andersbj mtagaya microRNA
  • Pathway analysis using random forests classification and regression.
    Bioinformatics (29 June 2006)
    by Herbert Pang, Aiping Lin, Matthew Holford, Bradley E E Enerson, Bin Lu, Michael P P Lawton, Eugenia Floyd, Hongyu Zhao
  • A stable gene selection in microarray data analysis.
    BMC Bioinformatics, Vol. 7 (2006)
    by K Yang, Z Cai, J Li, G Lin
    posted to classification feature_selection by jfr on 2007-01-08 12:19:46 as **
  • Class discovery and classification of tumor samples using mixture modeling of gene expression data--a unified approach.
    Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2545-2552.
    posted to class_discovery by jfr on 2006-12-15 17:13:55 as **
  • Genetic regulators of large-scale transcriptional signatures in cancer
    Nature Genetics, Vol. 38, No. 4. (05 March 2006), pp. 421-430.
    by Adam S Adler, Meihong Lin, Hugo Horlings, Dimitry SA Nuyten, Marc J van de Vijver, Howard Y Chang
  • A summarization approach for Affymetrix GeneChip data using a reference training set from a large, biologically diverse database
    BMC Bioinformatics, Vol. 7 (23 October 2006), 464.
    by Simon Katz, Rafael A Irizarry, Xue Lin, Mark Tripputi, Mark W Porter
    posted to affy low_level normalization by jfr on 2006-11-08 12:17:05 as ** along with 1 person ghattem
  • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/user/jfr/author/Lin

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