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irenas tool [33 articles]

最近 irenas さんのライブラリに追加された論文の中から タグ tool. You can also see everyone's tool.
  • MeSHmap: a text mining tool for MEDLINE.
    Proc AMIA Symp (2001), pp. 642-646.
    by P Srinivasan
    posted to bib bio ir med medline nlp tool by irenas on 2005-03-25 17:00:37 as read along with 2 people and 1 group meikipp guoziyi dbk-lab
  • notes GIS: a biomedical text-mining system for gene information discovery.
    Bioinformatics, Vol. 20, No. 1. (1 January 2004), pp. 120-121.
    by JH Chiang, HC Yu, HJ Hsu
    posted to bib bio gene med nlp software tool txtmining by irenas on 2005-03-25 16:56:54 as read along with 1 person and 1 group jyuh dbk-lab
  • Identifying biological themes within lists of genes with EASE.
    Genome Biol, Vol. 4, No. 10. (2003)
    by DA Hosack, G Dennis, BT Sherman, HC Lane, RA Lempicki
    posted to bib bio gene nlp tool by irenas on 2005-03-25 16:54:00 as ** along with 2 people and 2 groups jeremymiller capitall dbk-lab GeschwindLab
  • notes Update on XplorMed: A web server for exploring scientific literature.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3866-3868.
    by C Perez-Iratxeta, AJ Pérez, P Bork, MA Andrade
    posted to bib bio ir med software tool by irenas on 2005-03-25 16:47:32 as read along with 2 people and 2 groups miguel yas dbk-lab T_lab
  • notes MedMiner: an Internet text-mining tool for biomedical information, with application to gene expression profiling.
    Biotechniques, Vol. 27, No. 6. (December 1999)
    by L Tanabe, U Scherf, LH Smith, JK Lee, L Hunter, JN Weinstein
    posted to bib bio gene nlp tool txtmining by irenas on 2005-03-25 16:37:06 as read along with 3 people and 2 groups Enro yas simmie dbk-lab T_lab
  • notes Dragon TF Association Miner: a system for exploring transcription factor associations through text-mining.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by H Pan, L Zuo, V Choudhary, Z Zhang, SH Leow, FT Chong, Y Huang, VW Ong, B Mohanty, SL Tan, SP Krishnan, VB Bajic
    posted to bio gene nlp rel software srb tool txtmining by irenas on 2005-03-25 15:11:32 as read along with 1 person and 2 groups yas dbk-lab T_lab
  • MedScan, a natural language processing engine for MEDLINE abstracts.
    Bioinformatics, Vol. 19, No. 13. (1 September 2003), pp. 1699-1706.
    by S Novichkova, S Egorov, N Daraselia
    posted to bib bio med medline nlp sold tool by irenas on 2005-03-25 12:23:02 as ** along with 3 people and 2 groups yas natsu dullhunk dbk-lab T_lab
  • A simple and practical dictionary-based approach for identification of proteins in Medline abstracts.
    J Am Med Inform Assoc, Vol. 11, No. 3. (n 2004), pp. 174-178.
    by S Egorov, A Yuryev, N Daraselia
    posted to bib medline ner nlp protein term tool by irenas on 2005-03-25 12:21:35 as read along with 2 people and 1 group dullhunk gaudan dbk-lab
  • notes SEMEDA: ontology based semantic integration of biological databases.
    Bioinformatics, Vol. 19, No. 18. (12 December 2003), pp. 2420-2427.
    by J Köhler, S Philippi, M Lange
    posted to db integration memo onto software tool top by irenas on 2005-03-23 16:02:33 as read along with 2 people and 2 groups helliontroy agileproteomics dbk-lab biomedical-nlp
  • notes MedKit: a helper toolkit for automatic mining of MEDLINE/PubMed citations.
    Bioinformatics, Vol. 21, No. 5. (1 March 2005), pp. 694-695.
    by J Ding, D Berleant
    posted to bib bio medline nlp software tool txtmining by irenas on 2005-03-23 15:43:37 as ** along with 2 people and 1 group Enro jyuh dbk-lab
  • notes MedPost: a part-of-speech tagger for bioMedical text.
    Bioinformatics, Vol. 20, No. 14. (22 September 2004), pp. 2320-2321.
    by L Smith, T Rindflesch, WJ Wilbur
    posted to bib nlp software tool by irenas on 2005-03-23 15:37:46 as ** along with 6 people and 4 groups yas hpiwowar kkaiser vlachmore TheresaNiederberger yggdrasil dbk-lab T_lab IEG dbmi-nlp
  • Biological data integration: wrapping data and tools.
    IEEE Trans Inf Technol Biomed, Vol. 6, No. 2. (June 2002), pp. 123-128.
    by Z Lacroix
    posted to model tool by irenas on 2005-03-23 12:50:45 as ** along with 1 person and 1 group devakiram dbk-lab
  • Protein structures and information extraction from biological texts: the PASTA system.
    Bioinformatics, Vol. 19, No. 1. (January 2003), pp. 135-143.
    by R Gaizauskas, G Demetriou, PJ Artymiuk, P Willett
    posted to bib bio ie nlp protein tool by irenas on 2005-03-23 11:41:03 as ** along with 3 people and 2 groups caporaso vlachmore yggdrasil dbk-lab biomedical-nlp
  • EDGAR: extraction of drugs, genes and relations from the biomedical literature.
    Pac Symp Biocomput (2000), pp. 517-528.
    by TC Rindflesch, L Tanabe, JN Weinstein, L Hunter
    posted to bib class gene ie ner nlp term tool by irenas on 2005-03-23 11:39:30 as ** along with 2 people and 1 group zlu ibuch dbk-lab
  • BioMeKe: an ontology-based biomedical knowledge extraction system devoted to transcriptome analysis.
    Stud Health Technol Inform, Vol. 95 (2003), pp. 80-85.
    by G Marquet, A Burgun, F Moussouni, E Guérin, F Le Duff, O Loréal
    posted to bib bio ie nlp onto tool txtmining by irenas on 2005-03-23 11:30:25 as ** along with 1 person and 1 group daniel_schober dbk-lab
  • JXP4BIGI: a generalized, Java XML-based approach for biological information gathering and integration.
    Bioinformatics, Vol. 19, No. 18. (12 December 2003), pp. 2351-2358.
    by Y Huang, T Ni, L Zhou, S Su
    posted to integration memo sysbio tool xml by irenas on 2005-03-23 10:28:45 as read along with 1 person and 1 group agileproteomics dbk-lab
  • notes Content-rich biological network constructed by mining PubMed abstracts.
    BMC Bioinformatics, Vol. 5, No. 1. (8 October 2004)
    by H Chen, BM Sharp
    posted to bib bio ie nlp software tool txtmining by irenas on 2005-03-23 09:48:05 as ** along with 7 people and 2 groups snuppepuppan Enro BioGeek fisherp jeremymiller daniel_schober adoms dbk-lab GeschwindLab
  • notes BioRAT: extracting biological information from full-length papers.
    Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 3206-3213.
    by DP Corney, BF Buxton, WB Langdon, DT Jones
    posted to bib bio ie nlp software tool txtmining by irenas on 2005-03-22 19:57:45 as ** along with 9 people and 5 groups camster snuppepuppan Enro jyuh A_Olympia helliontroy massivemayhem sobolevnrm satre Philosophy_of_Information dbk-lab Blog_and_Wiki_Research biomedical-nlp baker-group
  • Medstract: Creating Large-scale Information Servers for Biomedical Libraries
    by Wei Luo, Jason Zhang, Anna Rumshisky, Roser Saurí, José Castaño, James Pustejovsky
    posted to bib bio med nlp tool by irenas on 2005-03-22 19:47:46 as ** along with 1 group dbk-lab
  • Snowball: a prototype system for extracting relations from large text collections
    Vol. 30, No. 2. (June 2001)
    by Eugene Agichtein, Luis Gravano, Jeff Pavel, Viktoriya Sokolova, Aleksandr Voskoboynik
    posted to bib ie nlp rel tool txtmining by irenas on 2005-03-22 17:49:52 as ** along with 2 people and 1 group Enro topher dbk-lab
  • notes MaSTerClass: a case-based reasoning system for the classification of biomedical terms.
    Bioinformatics (3 March 2005)
    by Irena Spasic, Sophia Ananiadou, Jun-Ichi I Tsujii
    posted to bib bio cbr class nlp software spasic srb term tool by irenas on 2005-03-22 17:21:16 as read along with 1 person and 1 group jyuh dbk-lab
  • notes MyWEST: my Web Extraction Software Tool for effective mining of annotations from web-based databanks.
    Bioinformatics, Vol. 20, No. 18. (12 December 2004), pp. 3326-3335.
    by M Masseroli, A Stella, N Meani, M Alcalay, F Pinciroli
    posted to bib software tool by irenas on 2005-03-22 17:20:07 as ** along with 1 group dbk-lab
  • notes GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes.
    Bioinformatics, Vol. 20, No. 18. (12 December 2004), pp. 3710-3715.
    by EI Boyle, S Weng, J Gollub, H Jin, D Botstein, JM Cherry, G Sherlock
    posted to bib bio gene onto software term tool by irenas on 2005-03-22 17:19:39 as ** along with 3 people and 1 group balajis nuke2005 macavity1g dbk-lab
  • notes MedlineR: an open source library in R for Medline literature data mining.
    Bioinformatics, Vol. 20, No. 18. (12 December 2004), pp. 3659-3661.
    by SM Lin, P McConnell, KF Johnson, J Shoemaker
    posted to bib bio med medline nlp software tool txtmining by irenas on 2005-03-22 17:19:09 as ** along with 5 people and 2 groups cisevol druvus Enro BioGeek za BergmanLab dbk-lab
  • notes PubMatrix: a tool for multiplex literature mining
    BMC Bioinformatics, Vol. 4 (2003), 61.
    by Kevin G Becker, Douglas A Hosack, G Dennis, Richard A Lempicki, Tiffani J Bright, Chris Cheadle, Jim Engel
    posted to bib bio ir med medline nlp software tool by irenas on 2005-03-22 17:10:34 as read along with 1 group dbk-lab
  • notes TXTGate: profiling gene groups with text-based information
    Genome Biology, Vol. 5 (2004), R43.
    by Patrick Glenisson, Bert Coessens, Steven Van Vooren, Janick Mathys, Yves Moreau, Bart De Moor
    posted to bib gene medline tool txtmining yeast by irenas on 2005-03-22 17:06:37 as ** along with 1 group dbk-lab
  • notes PASBio: predicate-argument structures for event extraction in molecular biology
    BMC Bioinformatics, Vol. 5 (2004), 155.
    by Tuangthong Wattarujeekrit, Parantu K Shah, Nigel Collier
    posted to bib bio ie nlp tool txtmining by irenas on 2005-03-22 17:02:53 as ** along with 1 group dbk-lab
  • notes CoPub Mapper: mining MEDLINE based on search term co-publication
    BMC Bioinformatics, Vol. 6 (2005), 51.
    by Blaise T Alako, Antoine Veldhoven, Sjozef van Baal, Rob Jelier, Stefan Verhoeven, Ton Rullmann, Jan Polman, Guido Jenster
    posted to bib bio med medline nlp tool txtmining by irenas on 2005-03-22 16:51:08 as ** along with 1 person and 1 group Enro dbk-lab
  • notes PreBIND and Textomy – mining the biomedical literature for protein-protein interactions using a support vector machine
    BMC Bioinformatics, Vol. 4 (2003), 11.
    by Ian Donaldson, Joel Martin, Berry de Bruijn, Cheryl Wolting, Vicki Lay, Brigitte Tuekam, Shudong Zhang, Berivan Baskin, Gary D Bader, Katerina Michalickova, Tony Pawson, Christopher W Hogue
    posted to bib bio ie ml nlp protein rel software svm tool txtmining by irenas on 2005-03-22 16:40:39 as ** along with 1 person and 1 group Enro dbk-lab
  • notes Tools for loading MEDLINE into a local relational database
    BMC Bioinformatics, Vol. 5 (2004), 146.
    by Marti A Hearst, Russ B Altman, Ariel S Schwartz, Gaurav Bhalotia, Diane E Oliver
    posted to bib db medline memo software tool by irenas on 2005-03-22 16:28:59 as read along with 1 group dbk-lab
  • notes Content-rich biological network constructed by mining PubMed abstracts
    BMC Bioinformatics, Vol. 5 (2004), 147.
    by Hao Chen, Burt M Sharp
    posted to bib bio ie medline nlp rel software tool txtmining by irenas on 2005-03-22 16:25:51 as ** along with 2 people and 1 group Enro daniel_schober dbk-lab
  • notes Textpresso: an ontology-based information retrieval and extraction system for biological literature.
    PLoS Biol, Vol. 2, No. 11. (November 2004)
    by HM Müller, EE Kenny, PW Sternberg
    posted to bib bio ie ir nlp onto software tool txtmining by irenas on 2005-01-22 16:51:01 as ***** along with 12 people and 4 groups tharris Enro jyuh yas dullhunk hpiwowar fisherp zlu daniel_schober diogomartins mroos vlachmore C. elegans / WormBase dbk-lab T_lab AID
  • notes SNOW: standard nomenclature wizard to help searching for (bio) chemical standardized names.
    Bioinformatics, Vol. 19, No. 18. (12 December 2003), pp. 2492-2493.
    by D Aguilar, B Oliva, FX Aviles, E Querol
    posted to bib bio ner nlp software term tool by irenas on 2004-11-12 15:15:31 along with 1 person and 1 group baldo dbk-lab
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