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insectopalo library [26 articles]

最近 insectopalo さんのライブラリ .
  • The relation between the divergence of sequence and structure in proteins.
    EMBO J, Vol. 5, No. 4. (April 1986), pp. 823-826.
    by C Chothia, AM Lesk
    posted to pfc3 sequence_structure_relationship by insectopalo on 2008-04-16 17:47:10 as ** along with 7 people and 6 groups ana pansapiens jwm Einat marcius xdeupi ffranca structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF SGU-CIPF
  • Progress and challenges in high-resolution refinement of protein structure models.
    Proteins, Vol. 59, No. 1. (1 April 2005), pp. 15-29.
    by KM Misura, D Baker
    posted to pfc3 structural_modeling by insectopalo on 2008-04-16 15:51:01 as ** along with 1 person bluvsh1
  • Progress in Modeling of Protein Structures and Interactions
    Science, Vol. 310, No. 5748. (28 October 2005), pp. 638-642.
    by Ora Schueler-Furman, Chu Wang, Phil Bradley, Kira Misura, David Baker
    posted to pfc3 review structural_modeling by insectopalo on 2008-04-16 15:43:42 as ** along with 12 people and 2 groups thaliana jwm vavi bicko KyuhoLee marcius eweaver tny nickolay dgront rsantana mirzazadeh BioinfoCIPF SGU-CIPF
  • Comparative modeling for protein structure prediction.
    Curr Opin Struct Biol (27 February 2006)
    by Krzysztof Ginalski
    posted to comparative_modeling pfc3 review by insectopalo on 2008-04-16 15:42:08 as ** along with 5 people BragilMassoud kuhn rabio schuylrp ruvido
  • The Impact of Structural Genomics: Expectations and Outcomes
    Science, Vol. 311, No. 5759. (20 January 2006), pp. 347-351.
    by John-Marc Chandonia, Steven E Brenner
    posted to pfc3 structural_genomics by insectopalo on 2008-04-16 15:39:26 as ** along with 9 people and 2 groups tjimenez bicko balajis marcius tny penka anwazo dgront selrac BioinfoCIPF SGU-CIPF
  • A replica exchange Monte Carlo algorithm for protein folding in the HP model
    BMC Bioinformatics, Vol. 8 (17 September 2007), 342.
    by Chris Thachuk, Alena Shmygelska, Holger H Hoos
    posted to monte_carlo pfc3 by insectopalo on 2008-04-15 15:35:32 as ** along with 3 people iantunbridge j3xucite saunders
  • Stochastic approaches for modelling in vivo reactions
    Computational Biology and Chemistry, Vol. 28, No. 3. (July 2004), pp. 165-178.
    by TE Turner, S Schnell, K Burrage
    posted to monte_carlo pfc3 by insectopalo on 2008-04-15 15:34:31 as ** along with 5 people and 3 groups brain jjray balabu schnell roland_ewald IU_Informatics_CX dIEMoSIRIS MoSi-Rostock
  • New Monte Carlo algorithms for protein folding
    Curr Opin Struct Biol, Vol. 9, No. 2. (April 1999), pp. 177-183.
    by UH Hansmann, Y Okamoto
    posted to monte_carlo pfc3 by insectopalo on 2008-04-15 15:32:29 as ** along with 3 people dgront rabio iantunbridge
  • An efficient conformational sampling method for homology modeling.
    Proteins (11 October 2007)
    by Rongsheng Han, Alejandra Leo-Macias, Daniel Zerbino, Ugo Bastolla, Bruno Contreras-Moreira, Angel R R Ortiz
    posted to labo pfc3 by insectopalo on 2008-04-15 15:29:55 as ** along with 4 people dimka choonpeng cdeane sebk
  • Exchange Monte Carlo Method and Application to Spin Glass Simulations
    (6 Dec 1995)
    by Koji Hukushima, Koji Nemoto
    posted to monte_carlo pfc3 by insectopalo on 2008-04-15 15:28:07 as ** along with 1 person Akimasa
  • On the logical relationship between natural selection and self-organization
    Journal of Evolutionary Biology, Vol. 19, No. 6. (November 2006), pp. 1785-1794.
    by GA Hoelzer, E Smith, JW Pepper
    posted to evolution natural selection by insectopalo on 2008-03-11 21:15:33 as ***** along with 5 people and 3 groups qwermish mattjb livingthingdan grisogono Ema ComplexAdaptiveSystems DSTO-CAS livingthing
  • Evolution and physics in comparative protein structure modeling.
    Acc Chem Res, Vol. 35, No. 6. (June 2002), pp. 413-421.
    by A Fiser, M Feig, CL Brooks, A Sali
    posted to evolutionary_physics pfc2 by insectopalo on 2007-10-10 18:02:55 as *** along with 2 people and 2 groups barry vavi structural_bioinformatics Bioinformatics
  • Comparative protein structure modeling of genes and genomes.
    Annu Rev Biophys Biomol Struct, Vol. 29 (2000), pp. 291-325.
    by MA Marti-Renom, AC Stuart, A Fiser, R Sanchez, F Melo, A Sali
    posted to homology_modeling pfc2 review by insectopalo on 2007-10-10 17:54:08 as **** along with 11 people and 2 groups chad_davis IrinaMoreira min013 aalibes nigham ttjoseph marcius ffranca duartemolha dgront ruvido BioinfoCIPF SGU-CIPF
  • A protein evolution model with independent sites that reproduces site-specific amino acid distributions from the Protein Data Bank
    BMC Evolutionary Biology, Vol. 6 (31 May 2006), 43.
    by Ugo Bastolla, Markus Porto, Eduardo H Roman, Michele Vendruscolo
    posted to pfc by insectopalo on 2007-07-09 15:57:22 as ***** along with 1 person msierk
  • Structural changes involved in protein binding correlate with intrinsic motions of proteins in the unbound state.
    Proc Natl Acad Sci U S A (14 December 2005)
    by Dror Tobi, Ivet Bahar
    posted to pfc by insectopalo on 2007-07-09 15:56:28 as ***** along with 3 people apaydin aqeel shuns
  • Proteins with Similar Architecture Exhibit Similar Large-Scale Dynamic Behavior
    Biophys. J., Vol. 78, No. 4. (1 April 2000), pp. 2093-2106.
    by O Keskin, RL Jernigan, I Bahar
    posted to pfc by insectopalo on 2007-07-09 15:54:47 as ***** along with 3 people edvin aqeel saravan
  • Anisotropy of fluctuation dynamics of proteins with an elastic network model.
    Biophys J, Vol. 80, No. 1. (January 2001), pp. 505-515.
    by AR Atilgan, SR Durell, RL Jernigan, MC Demirel, O Keskin, I Bahar
    posted to pfc by insectopalo on 2007-07-09 15:53:59 as ***** along with 5 people choonpeng apaydin lna aqeel simone
  • Sequence variations within protein families are linearly related to structural variations.
    J Mol Biol, Vol. 323, No. 3. (25 October 2002), pp. 551-562.
    by P Koehl, M Levitt
    posted to pfc by insectopalo on 2007-07-09 15:53:25 as ***** along with 3 people and 2 groups ana barry okarsligil structural_bioinformatics Bioinformatics
  • Simulating protein evolution in sequence and structure space.
    Curr Opin Struct Biol, Vol. 14, No. 2. (April 2004), pp. 202-207.
    by Y Xia, M Levitt
    posted to pfc by insectopalo on 2007-07-09 15:52:57 as ***** along with 10 people and 4 groups betainverse korakot mdimmic karbak rmj001 ana barry aalibes gbart analogAI Philosophy_of_Information Blog_and_Wiki_Research structural_bioinformatics Bioinformatics
  • Bio3d: an R package for the comparative analysis of protein structures.
    Bioinformatics (29 August 2006)
    by Barry J J Grant, Ana P C P Rodrigues, Karim M M Elsawy, J Andrew A McCammon, Leo S D S Caves
    posted to pfc by insectopalo on 2007-07-09 15:52:09 as ***** along with 6 people and 2 groups ana barry Einat plofje krishnaJCSG cdeane structural_bioinformatics Bioinformatics
  • Coarse-grained normal mode analysis in structural biology
    Current Opinion in Structural Biology, Vol. 15, No. 5. (October 2005), pp. 586-592.
    by Ivet Bahar, Aj Rader
    posted to pfc by insectopalo on 2007-07-09 15:51:26 as ***** along with 7 people and 2 groups higueruelo BragilMassoud apaydin barry aqeel shuns scis0000001 structural_bioinformatics Bioinformatics
  • Evolutionary plasticity of protein families: Coupling between sequence and structure variation
    Proteins: Structure, Function, and Bioinformatics, Vol. 61, No. 3. (23 September 2005), pp. 535-544.
    by Anna R Panchenko, Yuri I Wolf, Larisa A Panchenko, Thomas Madej
    posted to pfc by insectopalo on 2007-07-09 15:50:35 as ***** along with 4 people and 3 groups marcius alexg gbart sobolevnrm BioinfoCIPF SGU-CIPF baker-group
  • Emergence of protein fold families through rational design.
    PLoS Comput Biol, Vol. 2, No. 7. (7 July 2006)
    by F Ding, NV Dokholyan, E Shakhnovich
    posted to pfc by insectopalo on 2007-07-09 15:49:57 as ***** along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • Multivariate Analysis of Conserved Sequence-Structure Relationships in Kinesins: Coupling of the Active Site and a Tubulin-binding Sub-domain
    Journal of Molecular Biology, Vol. 368, No. 5. (18 May 2007), pp. 1231-1248.
    by Barry J Grant, Andrew J Mccammon, Leo S Caves, Robert A Cross
    posted to pfc by insectopalo on 2007-07-09 15:49:03 as ***** along with 3 people and 2 groups barry choonpeng cactus structural_bioinformatics Bioinformatics
  • An analysis of core deformations in protein superfamilies.
    Biophys J, Vol. 88, No. 2. (February 2005), pp. 1291-1299.
    by A Leo-Macias, P Lopez-Romero, D Lupyan, D Zerbino, AR Ortiz
    posted to pfc by insectopalo on 2007-07-09 15:46:50 as ***** along with 7 people and 2 groups edvin apaydin ana barry lna dimka aqeel structural_bioinformatics Bioinformatics
  • A new progressive-iterative algorithm for multiple structure alignment
    Bioinformatics, Vol. 21, No. 15. (1 August 2005), pp. 3255-3263.
    by Dmitry Lupyan, Alejandra Leo-Macias, Angel R Ortiz
    posted to pfc by insectopalo on 2007-07-09 15:45:38 as ***** along with 3 people and 2 groups ana dimka analogAI structural_bioinformatics Bioinformatics
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