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ilh library [89 articles]

最近 ilh さんのライブラリ .
  • Invertebrate 7SK snRNAs
    Journal of Molecular Evolution, Vol. 66, No. 2. (20 February 2008), pp. 107-115.
    by Andreas Gruber, Dorota Koper-Emde, Manja Marz, Hakim Tafer, Stephan Bernhart, Gregor Obernosterer, Axel Mosig, Ivo Hofacker, Peter Stadler, Bernd-Joachim Benecke
    posted to no-tag by ilh on 2008-03-26 11:05:17 as read
  • Beyond energy minimization: approaches to the kinetic folding of RNA
    Monatshefte für Chemie / Chemical Monthly
    by Christoph Flamm, Ivo L Hofacker
    posted to mypub by ilh on 2008-03-09 17:55:05 as read
  • Strategies for measuring evolutionary conservation of RNA secondary structures
    BMC Bioinformatics, Vol. 9 (26 February 2008), 122.
    by Andreas R Gruber, Stefan H Bernhart, Ivo L Hofacker, Stefan Washietl
    posted to mypub by ilh on 2008-03-07 16:22:05 as read along with 3 people and 1 group eckart_bindewald stajich gresillaud Berkeley Mycology
  • CMfindera covariance model based RNA motif finding algorithm
    Bioinformatics, Vol. 22, No. 4. (15 February 2006), pp. 445-452.
    by Zizhen Yao, Zasha Weinberg, Walter L Ruzzo
    posted to no-tag by ilh on 2007-11-19 16:57:29 as read along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • Multiple structural alignment and clustering of RNA sequences.
    Bioinformatics (25 February 2007)
    by Elfar Torarinsson, Jakob H H Havgaard, Jan Gorodkin
    posted to no-tag by ilh on 2007-11-19 16:32:03 as read along with 7 people and 2 groups marcius eckart_bindewald eweaver ppgardne zwang dunnp zhouyu BioinfoCIPF SGU-CIPF
  • Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints.
    BMC Bioinformatics, Vol. 7 (04 September 2006), 400.
    by Robin D Dowell, Sean R Eddy
    posted to no-tag by ilh on 2007-11-19 16:23:29 as read along with 4 people and 2 groups reyez marcius eckart_bindewald dquest BioinfoCIPF SGU-CIPF
  • Effect of target secondary structure on RNAi efficiency
    RNA (7 August 2007), rna.546207.
    by Yu Shao, Chi Y Chan, Anil Maliyekkel, Charles E Lawrence, Igor B Roninson, Ye Ding
    posted to no-tag by ilh on 2007-09-16 08:48:58 as read along with 3 people fengqian mtagaya Hosna
  • Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis.
    Genome Res (5 September 2006)
    by Eugene Berezikov, Geert van Tetering, Mark Verheul, Jose van de Belt, Linda van Laake, Joost Vos, Robert Verloop, Marc van de Wetering, Victor Guryev, Shuji Takada, Anton Jan van Zonneveld, Hiroyuki Mano, Ronald Plasterk, Edwin Cuppen
    posted to no-tag by ilh on 2007-08-29 11:47:58 as ** along with 5 people and 1 group jfr mortenlindow andersbj mtagaya plofje microRNA
  • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    Nature, Vol. 447, No. 7146. (14 June 2007), pp. 799-816.
    posted to mypub by ilh on 2007-06-15 09:03:40 as read along with 22 people and 2 groups jasonflannick ep161302 jyuh cmmorel dpollard djkt plofje ramensky joepickrell massivemayhem fishtank Garamonfok jmuhlich bioyang cabbagezs xingxu antonkratz mimulus_99 julianjonker gjuggler drbal maralena EisenLab SorgerLab
  • Structured RNAs in the ENCODE selected regions of the human genome
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 852-864.
    by Stefan Washietl, Jakob S Pedersen, Jan O Korbel, Claudia Stocsits, Andreas R Gruber, Jorg Hackermuller, Jana Hertel, Manja Lindemeyer, Kristin Reiche, Andrea Tanzer, Catherine Ucla, Carine Wyss, Stylianos E Antonarakis, France Denoeud, Julien Lagarde, Jorg Drenkow, Philipp Kapranov, Thomas R Gingeras, Roderic Guigo, Michael Snyder, Mark B Gerstein, Alexandre Reymond, Ivo L Hofacker, Peter F Stadler
    posted to mypub ncrna by ilh on 2007-06-15 09:01:29 as read along with 1 person and 1 group ghattem Bioinformatics
  • The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures.
    Nucleic Acids Res (22 April 2007)
    by Andreas R R Gruber, Richard Neuböck, Ivo L L Hofacker, Stefan Washietl
    posted to mypub by ilh on 2007-05-27 17:42:01 as read along with 1 person balajis
  • Rational design and rapid screening of antisense oligonucleotides for prokaryotic gene modulation
    Nucleic Acids Research, Vol. 34, No. 19. (November 2006), pp. 5660-5669.
    by Shao, Yu, Wu, Yan, Chan, Chi Yu, Mcdonough, Kathleen, Ding, Ye
    posted to no-tag by ilh on 2007-04-24 12:16:38 as read along with 1 person austin
  • RNAs everywhere: genome-wide annotation of structured RNAs.
    J Exp Zoolog B Mol Dev Evol (14 December 2006)
    by Rolf Backofen, Stephan H H Bernhart, Christoph Flamm, Claudia Fried, Guido Fritzsch, Jörg Hackermüller, Jana Hertel, Ivo L L Hofacker, Kristin Missal, Axel Mosig, Sonja J J Prohaska, Dominic Rose, Peter F F Stadler, Andrea Tanzer, Stefan Washietl, Sebastian Will
    posted to mypub by ilh on 2007-03-01 11:02:32 as read along with 11 people and 5 groups jfr bala marcius eckart_bindewald tardigrade andersbj penka cdawson raylim jayster4 maralena microRNA BioinfoCIPF SGU-CIPF DictyosteliumGroup GIG
  • Visualization of Barrier Tree Sequences
    IEEE Transactions on Visualization and Computer Graphics, Vol. 12, No. 5. (September 2006), pp. 781-788.
    by Christian Heine, Gerik Scheuermann, Christoph Flamm, Ivo L Hofacker, Peter F Stadler
    posted to mypub by ilh on 2007-03-01 11:00:21 as read along with 1 person and 1 group dergrosse Scientific_Visualization
  • Automatic detection of conserved base pairing patterns in RNA virus genomes
    Computers & Chemistry, Vol. 23, No. 3-4. (15 June 1999), pp. 401-414.
    by Ivo L Hofacker, Peter F Stadler
    posted to mypub by ilh on 2006-07-11 10:52:34 as read
  • RNA folding in silico
    (20 August 2004), pp. 177-190.
    by Christoph Flamm, Ivo L Hofacker, Peter F Stadler
    edited by Susanne Brakmann, Andreas Schwienhorst
    posted to mypub by ilh on 2006-07-11 10:40:27 as read
  • Modeling RNA Folding
    (28 February 2006), pp. 227-245.
    by Ivo L Hofacker, Peter F Stadler
    edited by TS Deisboeck, Y Kresh
    posted to mypub by ilh on 2006-07-11 10:25:50 as read
  • StrAl: progressive alignment of non-coding RNA using base pairing probability vectors in quadratic time
    Bioinformatics, Vol. 22, No. 13. (1 July 2006), pp. 1593-1599.
    by Dalli, Deniz, Wilm, Andreas, Mainz, Indra, Steger, Gerhard
    posted to no-tag by ilh on 2006-06-27 12:53:36 as read along with 4 people and 4 groups marcius eckart_bindewald papamicd bsmagic Bioinformatics BioinfoCIPF bioinplant SGU-CIPF
  • Identification and Classification of Conserved RNA Secondary Structures in the Human Genome.
    PLoS Comput Biol, Vol. 2, No. 4. (21 April 2006)
    by Jakob Skou S Pedersen, Gill Bejerano, Adam Siepel, Kate Rosenbloom, Kerstin Lindblad-Toh, Eric S S Lander, Jim Kent, Webb Miller, David Haussler
    posted to no-tag by ilh on 2006-06-26 09:12:46 as read along with 11 people and 2 groups hpaces marcius eckart_bindewald tardigrade arcticrasta tabu mtagaya Eonwe djkt raylim tale BioinfoCIPF SGU-CIPF
  • Short blocks from the noncoding parts of the human genome have instances within nearly all known genes and relate to biological processes.
    Proc Natl Acad Sci U S A (24 April 2006)
    by Isidore Rigoutsos, Tien Huynh, Kevin Miranda, Aristotelis Tsirigos, Alice McHardy, Daniel Platt
    posted to no-tag by ilh on 2006-06-26 09:12:09 as ** along with 5 people and 1 group ep161302 imouthesmp tuck andersbj mtagaya microRNA
  • Control of mammalian translation by mRNA structure near caps
    RNA, Vol. 12, No. 5. (1 May 2006), pp. 851-861.
    by Jeremy R Babendure, Jennie L Babendure, Jian-Hua Ding, Roger Y Tsien
    posted to no-tag by ilh on 2006-06-26 09:10:49 as ***
  • Distinguishing protein-coding from non-coding RNAs through support vector machines.
    PLoS Genet, Vol. 2, No. 4. (April 2006)
    by J Liu, J Gough, B Rost
    posted to no-tag by ilh on 2006-06-26 09:09:49 as *** along with 1 person and 2 groups bsmagic Bioinformatics bioinplant
  • Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs.
    Bioinformatics, Vol. 16, No. 7. (July 2000), pp. 583-605.
    by E Rivas, SR Eddy
    posted to no-tag by ilh on 2006-06-20 15:12:48 as read along with 9 people and 3 groups evaf marcius eckart_bindewald eweaver andersbj arcticrasta mtagaya dquest Eonwe microRNA BioinfoCIPF SGU-CIPF
  • Algorithm independent properties of RNA secondary structure predictions
    European Biophysics Journal, Vol. 25, No. 2. (December 1996), pp. 115-130.
    by Manfred Tacker, Peter F Stadler, Erich G Bornberg-Bauer, Ivo L Hofacker, P Schuster
    posted to mypub by ilh on 2006-06-13 16:17:08 as read along with 2 people and 2 groups marcius mtw BioinfoCIPF SGU-CIPF
  • Analysis of RNA sequence structure maps by exhaustive enumeration II. Structures of neutral networks and shape space covering
    Monatshefte für Chemie / Chemical Monthly, Vol. 127, No. 4. (April 1996), pp. 375-389.
    by W Grüner, R Giegerich, D Strothmann, C Reidys, J Weber, IL Hofacker, PF Stadler, P Schuster
    posted to mypub by ilh on 2006-06-13 11:44:01 as read
  • Analysis of RNA sequence structure maps by exhaustive enumeration I. Neutral networks
    Monatshefte für Chemie / Chemical Monthly, Vol. 127, No. 4. (April 1996), pp. 355-374.
    by W Grüner, R Giegerich, D Strothmann, C Reidys, J Weber, IL Hofacker, PF Stadler, P Schuster
    posted to mypub by ilh on 2006-06-13 11:43:16 as read
  • On the Evolution of Primitive Genetic Codes
    Origins of Life and Evolution of Biospheres (Formerly Origins of Life and Evolution of the Biosphere), Vol. 33, No. 4 - 5. (October 2003), pp. 491-514.
    by Gã¼nter Weberndorfer, Ivo L Hofacker, Peter F Stadler
    posted to mypub by ilh on 2006-06-13 11:36:08 as read
  • Concurrent Neutral Evolution of mRNA Secondary Structures and Encoded Proteins
    Journal of Molecular Evolution, Vol. 50, No. 3. (March 2000), pp. 238-242.
    by Jaromir Konecny, Michael Schöniger, Ivo Hofacker, Marc-Denis Weitze, Ludwig G Hofacker
    posted to mypub by ilh on 2006-06-13 11:20:20 as read
  • Combinatorics of RNA secondary structures
    Discrete Appl. Math., Vol. 88, No. 1-3. (1998), pp. 207-237.
    by Ivo L Hofacker, Peter Schuster, Peter F Stadler
    posted to mypub by ilh on 2006-06-13 11:13:01 as read along with 2 people and 2 groups marcius mtw BioinfoCIPF SGU-CIPF
  • Automatic detection of conserved RNA structure elements in complete RNA virus genomes.
    Nucleic Acids Res, Vol. 26, No. 16. (15 August 1998), pp. 3825-3836.
    by IL Hofacker, M Fekete, C Flamm, MA Huynen, S Rauscher, PE Stolorz, PF Stadler
    posted to mypub by ilh on 2006-06-13 10:53:42 as read along with 1 person evaf
  • MARNA: multiple alignment and consensus structure prediction of RNAs based on sequence structure comparisons.
    Bioinformatics, Vol. 21, No. 16. (15 August 2005), pp. 3352-3359.
    by S Siebert, R Backofen
    posted to no-tag by ilh on 2006-06-13 10:50:05 as read along with 2 people and 2 groups marcius arcticrasta BioinfoCIPF SGU-CIPF
  • A benchmark of multiple sequence alignment programs upon structural RNAs
    Nucleic Acids Research, Vol. 33, No. 8. (2005), pp. 2433-2439.
    by Paul P Gardner, Andreas Wilm, Stefan Washietl
    posted to no-tag by ilh on 2006-06-13 10:46:07 as read along with 1 person arcticrasta
  • Conserved RNA secondary structures in Picornaviridae genomes.
    Nucleic Acids Res, Vol. 29, No. 24. (15 December 2001), pp. 5079-5089.
    by C Witwer, S Rauscher, IL Hofacker, PF Stadler
    posted to mypub by ilh on 2006-06-13 10:33:04 as read along with 1 person evaf
  • Interactions in Oligonucleotide Hybrid Duplexes on Microarrays
    J. Phys. Chem. B, Vol. 108, No. 46. (18 November 2004), pp. 18015-18025.
    by H Binder, T Kirsten, IL Hofacker, PF Stadler, M Loeffler
    posted to mypub by ilh on 2006-06-13 10:28:52 as read
  • RNA folding at elementary step resolution.
    RNA, Vol. 6, No. 3. (March 2000), pp. 325-338.
    by C Flamm, W Fontana, IL Hofacker, P Schuster
    posted to mypub by ilh on 2006-06-13 10:16:55 as read along with 2 people evaf mtw
  • The SBML ODE Solver Library: a native API for symbolic and fast numerical analysis of reaction networks.
    Bioinformatics (9 March 2006)
    by Rainer Machné, Andrew Finney, Stefan Müller, James Lu, Stefanie Widder, Christoph Flamm
    posted to no-tag by ilh on 2006-06-13 10:16:41 as read along with 4 people eckart_bindewald wnpx mhucka josepe
  • Efficient computation of RNA folding dynamics
    Journal of Physics A: Mathematical and General, Vol. 37, No. 17. (2004), pp. 4731-4741.
    by Michael T Wolfinger, Andreas Svrcek-Seiler, Christoph Flamm, Ivo L Hofacker, Peter F Stadler
    posted to mypub by ilh on 2006-06-13 10:13:51 as read along with 2 people and 2 groups marcius mtw BioinfoCIPF SGU-CIPF
  • Comments on the alpha -peak shapes for relaxation in supercooled liquids
    Journal of Physics: Condensed Matter, Vol. 3, No. 26. (1991), pp. 5047-5071.
    by M Fuchs, W Gotze, I Hofacker, A Latz
    posted to mypub by ilh on 2006-06-13 10:13:33 as read
  • Stochastic pairwise alignments.
    Bioinformatics, Vol. 18 Suppl 2 (October 2002)
    by U Mückstein, IL Hofacker, PF Stadler
    posted to mypub by ilh on 2006-06-13 10:08:46 as read along with 1 person evaf
  • Fast Folding and Comparison of RNA Secondary Structures
    Monatsh. Chem., Vol. 125 (1994), pp. 167-188.
    by Ivo L Hofacker, Walter Fontana, Peter F Stadler, Sebastian L Bonhoeffer, Manfred Tacker, Peter Schuster
    posted to mypub by ilh on 2006-06-13 10:01:32 as read along with 3 people stanley mtw guxiyou
  • Oxygen and proton pathways in cytochrome c oxidase.
    Proteins, Vol. 30, No. 1. (January 1998), pp. 100-107.
    by I Hofacker, K Schulten
    posted to mypub by ilh on 2006-06-13 10:00:24 as read along with 2 people and 2 groups matzke jwm Radiation_Damage Stressosome
  • Thermodynamics of RNA-RNA Binding.
    Bioinformatics, Vol. 22, No. 10. (29 January 2006), pp. 1177-1182.
    by Ulrike Mückstein, Hakim Tafer, Jörg Hackermüller, Stephan H Bernhart, Peter F Stadler, Ivo L Hofacker
    posted to mypub by ilh on 2006-06-13 09:59:24 as read along with 6 people and 3 groups marcius eckart_bindewald andersbj arcticrasta mtw physics microRNA BioinfoCIPF SGU-CIPF
  • Design of multistable RNA molecules.
    RNA, Vol. 7, No. 2. (February 2001), pp. 254-265.
    by C Flamm, IL Hofacker, S Maurer-Stroh, PF Stadler, M Zehl
    posted to mypub by ilh on 2006-06-13 09:58:21 as read along with 3 people and 2 groups evaf marcius mtw BioinfoCIPF SGU-CIPF
  • Evolutionary patterns of non-coding RNAs
    Theory in Biosciences, Vol. 123, No. 4. (15 April 2005), pp. 301-369.
    by Athanasius F Bompfunewerer, Christoph Flamm, Claudia Fried, Guido Fritzsch, Ivo L Hofacker, Jorg Lehmann, Kristin Missal, Axel Mosig, Bettina Muller, Sonja J Prohaska
    posted to mypub ncrna by ilh on 2006-06-13 09:51:44 as read along with 3 people and 2 groups evaf Eonwe bsmagic Bioinformatics bioinplant
  • An ESS-analysis for ensembles of prisoner's dilemma strategies.
    J Theor Biol, Vol. 142, No. 2. (23 January 1990), pp. 189-200.
    by B Borstnik, D Pumpernik, IL Hofacker, GL Hofacker
    posted to mypub by ilh on 2006-06-13 09:39:39 as read
  • RNA folding and combinatory landscapes.
    PHYSICAL REVIEW. E. STATISTICAL PHYSICS, PLASMAS, FLUIDS, AND RELATED INTERDISCIPLINARY TOPICS, Vol. 47, No. 3. (March 1993), pp. 2083-2099.
    by W Fontana, PF Stadler, EG Bornberg-Bauer, T Griesmacher, IL Hofacker, M Tacker, P Tarazona, ED Weinberger, P Schuster
    posted to mypub by ilh on 2006-06-13 09:39:20 as read along with 1 person mtw
  • From sequences to shapes and back: a case study in RNA secondary structures.
    Proc R Soc Lond B Biol Sci, Vol. 255, No. 1344. (22 March 1994), pp. 279-284.
    by P Schuster, W Fontana, PF Stadler, IL Hofacker
    posted to mypub by ilh on 2006-06-13 09:39:14 as read along with 3 people and 2 groups evaf marcius mtw BioinfoCIPF SGU-CIPF
  • Neutral networks in protein space: a computational study based on knowledge-based potentials of mean force.
    Fold Des, Vol. 2, No. 5. (1997), pp. 261-269.
    by A Babajide, IL Hofacker, MJ Sippl, PF Stadler
    posted to mypub by ilh on 2006-06-13 09:39:00 as read
  • Complete suboptimal folding of RNA and the stability of secondary structures.
    Biopolymers, Vol. 49, No. 2. (February 1999), pp. 145-165.
    by S Wuchty, W Fontana, IL Hofacker, P Schuster
    posted to mypub by ilh on 2006-06-13 09:38:49 as read along with 3 people and 2 groups marcius eckart_bindewald arcticrasta BioinfoCIPF SGU-CIPF
  • Automatic detection of conserved base pairing patterns in RNA virus genomes.
    Comput Chem, Vol. 23, No. 3-4. (15 June 1999), pp. 401-414.
    by IL Hofacker, PF Stadler
    posted to mypub by ilh on 2006-06-13 09:38:42 as read
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