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hpaces 2007 [59 articles]

最近 hpaces さんのライブラリに追加された論文の中から タグ 2007. You can also see everyone's 2007.
  • Structural divergence between the human and chimpanzee genomes
    Human Genetics, Vol. 120, No. 6. (January 2007), pp. 759-778.
  • Chromosomal speciation of humans and chimpanzees revisited: studies of DNA divergence within inverted regions.
    Cytogenetic and genome research, Vol. 116, No. 1-2. (2007), pp. 53-60.
    posted to human genome_organisation chimp 2007 by hpaces on 2008-07-17 08:45:11 as **
  • DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis
    BMC Bioinformatics, Vol. 8 (02 November 2007), 426.
    by Brad T Sherman, Da W Huang, Qina Tan, Yongjian Guo, Stephan Bour, David Liu, Robert Stephens, Michael W Baseler, Clifford H Lane, Richard A Lempicki
  • Recent acceleration of human adaptive evolution
    Proceedings of the National Academy of Sciences, Vol. 104, No. 52. (26 December 2007), pp. 20753-20758.
    by John Hawks, Eric T Wang, Gregory M Cochran, Henry C Harpending, Robert K Moyzis
  • Mammalian mirtron genes.
    Mol Cell, Vol. 28, No. 2. (26 October 2007), pp. 328-336.
    by E Berezikov, WJ Chung, J Willis, E Cuppen, EC Lai
    posted to mirna mammal 2007 by hpaces on 2008-07-16 08:00:59 as * along with 3 people ale dchughes cabbagezs
  • Inter- and intra-combinatorial regulation by transcription factors and microRNAs
    BMC Genomics, Vol. 8 (30 October 2007), 396.
    by Yiming Zhou, John Ferguson, Joseph T Chang, Yuval Kluger
  • Initial sequence and comparative analysis of the cat genome
    Genome Res., Vol. 17, No. 11. (1 November 2007), pp. 1675-1689.
    by Joan U Pontius, James C Mullikin, Douglas R Smith, Agencourt S Team, Kerstin Lindblad-Toh, Sante Gnerre, Michele Clamp, Jean Chang, Robert Stephens, Beena Neelam, Natalia Volfovsky, Alejandro A Schaffer, Richa Agarwala, Kristina Narfstrom, William J Murphy, Urs Giger, Alfred L Roca, Agostinho Antunes, Marilyn Menotti-Raymond, Naoya Yuhki, Jill Pecon-Slattery, Warren E Johnson, Guillaume Bourque, Glenn Tesler, Nisc, Stephen J O'Brien
  • What is a gene, post-ENCODE? History and updated definition.
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 669-681.
    by MB Gerstein, C Bruce, JS Rozowsky, D Zheng, J Du, JO Korbel, O Emanuelsson, ZD Zhang, S Weissman, M Snyder
  • Poor prognosis in carcinoma is associated with a gene expression signature of aberrant PTEN tumor suppressor pathway activity.
    Proc Natl Acad Sci U S A, Vol. 104, No. 18. (1 May 2007), pp. 7564-7569.
  • Sequencing and analysis of Neanderthal genomic DNA.
    Science, Vol. 314, No. 5802. (17 November 2006), pp. 1113-1118.
    by JP Noonan, G Coop, S Kudaravalli, D Smith, J Krause, J Alessi, F Chen, D Platt, S Pääbo, JK Pritchard, EM Rubin
  • The Diploid Genome Sequence of an Individual Human
    PLoS Biology, Vol. 5, No. 10. (1 October 2007), e254.
    by Samuel Levy, Granger Sutton, Pauline C Ng, Lars Feuk, Aaron L Halpern, Brian P Walenz, Nelson Axelrod, Jiaqi Huang, Ewen F Kirkness, Gennady Denisov, Yuan Lin, Jeffrey R Macdonald, Andy W Pang, Mary Shago, Timothy B Stockwell, Alexia Tsiamouri, Vineet Bafna, Vikas Bansal, Saul A Kravitz, Dana A Busam, Karen Y Beeson, Tina C Mcintosh, Karin A Remington, Josep F Abril, John Gill, Jon Borman, Yu-Hui Rogers, Marvin E Frazier, Stephen W Scherer, Robert L Strausberg, Craig J Venter
  • DNA sequencing: bench to bedside and beyond.
    Nucleic Acids Res (12 September 2007)
    by Clyde A A Hutchison
  • Ringo - an R/Bioconductor package for analyzing ChIP-chip readouts
    BMC Bioinformatics, Vol. 8 (26 June 2007), 221.
    by Joern Toedling, Oleg Sklyar, Wolfgang Huber
  • The ENCODE (ENCyclopedia Of DNA Elements) Project.
    Science, Vol. 306, No. 5696. (22 October 2004), pp. 636-640.
    by E Encode
  • Genomic plasticity in prokaryotes: the case of the square haloarchaeon.
    ISME J, Vol. 1, No. 3. (July 2007), pp. 235-245.
    posted to 2007 bacteria genome by hpaces on 2007-12-11 09:50:27 as ** along with 3 people operon jmeppley balicea
  • Long-term evolution of transposable elements
    Proceedings of the National Academy of Sciences (26 November 2007), 0705238104.
    by Arnaud Le Rouzic, Thibaud S Boutin, Pierre Capy
  • Comparative analysis of the complete genome sequence of the plant growth–promoting bacterium Bacillus amyloliquefaciens FZB42
    Nature Biotechnology, Vol. 25, No. 9. (19 August 2007), pp. 1007-1014.
    by Xiao H Chen, Alexandra Koumoutsi, Romy Scholz, Andreas Eisenreich, Kathrin Schneider, Isabelle Heinemeyer, Burkhard Morgenstern, Björn Voss, Wolfgang R Hess, Oleg Reva, Helmut Junge, Birgit Voigt, Peter R Jungblut, Joachim Vater, Roderich Süssmuth, Heiko Liesegang, Axel Strittmatter, Gerhard Gottschalk, Rainer Borriss
    posted to 2007 bacteria comparative_genomics genome by hpaces on 2007-12-11 09:08:23 as ** along with 1 person skhadar
  • Genome-wide transcriptional changes in Streptococcus gordonii in response to competence signaling peptide.
    J Bacteriol, Vol. 189, No. 21. (November 2007), pp. 7799-7807.
    by MM Vickerman, S Iobst, AM Jesionowski, SR Gill
    posted to 2007 bacteria genome by hpaces on 2007-12-11 09:07:05 as **
  • The complete genome sequence of Campylobacter jejuni strain 81116 (NCTC11828).
    J Bacteriol, Vol. 189, No. 22. (November 2007), pp. 8402-8403.
    by BM Pearson, DJ Gaskin, RP Segers, JM Wells, PJ Nuijten, AH van Vliet
    posted to 2007 bacteria genome by hpaces on 2007-12-11 09:04:39 as **
  • Paradoxical DNA Repair and Peroxide Resistance Gene Conservation in Bacillus pumilus SAFR-032.
    PLoS ONE, Vol. 2, No. 9. (2007)
    posted to 2007 bacteria genome by hpaces on 2007-12-11 09:03:33 as **
  • Identification of disulfide reductases in Campylobacterales: a bioinformatics investigation.
    Antonie Van Leeuwenhoek, Vol. 92, No. 4. (November 2007), pp. 429-441.
    posted to 2007 bacteria bioinformatics comparative_genomics genome by hpaces on 2007-12-11 09:02:55 as **
  • Lateral gene transfer between obligate intracellular bacteria: Evidence from the Rickettsia massiliae genome
    Genome Res., Vol. 17, No. 11. (1 November 2007), pp. 1657-1664.
    by Guillaume Blanc, Hiroyuki Ogata, Catherine Robert, Stephane Audic, Jean-Michel Claverie, Didier Raoult
    posted to 2007 bacteria genome horizontal_transfer by hpaces on 2007-12-11 09:00:10 as * along with 1 person operon
  • Rhizobial factors required for stem nodule maturation and maintenance in Sesbania rostrata-Azorhizobium caulinodans ORS571 symbiosis.
    Appl Environ Microbiol, Vol. 73, No. 20. (October 2007), pp. 6650-6659.
    by S Suzuki, T Aono, KB Lee, T Suzuki, CT Liu, H Miwa, S Wakao, T Iki, H Oyaizu
    posted to 2007 bacteria genome by hpaces on 2007-12-11 08:59:09 as *
  • Genome sequence of Lactobacillus helveticus: an organism distinguished by selective gene loss and IS element expansion.
    J Bacteriol (9 November 2007)
    by Michael Callanan, Pawel Kaleta, John O'Callaghan, Orla O'Sullivan, Kieran Jordan, Olivia McAuliffe, Amaia Sangrador-Vegas, Lydia Slattery, Gerald F F Fitzgerald, Tom Beresford, R Paul P Ross
    posted to 2007 bacteria genome by hpaces on 2007-12-11 08:48:12 as ** along with 1 person operon
  • Subtle genetic changes enhance virulence of methicillin resistant and sensitive Staphylococcus aureus
    BMC Microbiology, Vol. 7 (06 November 2007), 99.
    by Sarah K Highlander, Kristin G Hulten, Xiang Qin, Huaiyang Jiang, Shailaja Yerrapragada, Edward O Mason, Yue Shang, Tiffany M Williams, Regine M Fortunov, Yamei Liu, Okezie Igboeli, Joseph Petrosino, Madhan Tirumalai, Akif Uzman, George E Fox, Ana M Cardenas, Donna M Muzny, Lisa Hemphill, Yan Ding, Shannon Dugan, Peter R Blyth, Christian J Buhay, Huyen H Dinh, Alicia C Hawes, Michael Holder, Christie L Kovar, Sandra L Lee, Wen Liu, Lynne V Nazareth, Qiaoyan Wang, Jianling Zhou, Sheldon L Kaplan, George M Weinstock
    posted to 2007 bacteria genome by hpaces on 2007-12-11 08:18:14 as ** along with 1 person Xavier
  • Recent Evolutions of Multiple Sequence Alignment Algorithms
    PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e123.
    by Cédric Notredame
  • Predicting Protein Function with Hierarchical Phylogenetic Profiles: The Gene3D Phylo-Tuner Method Applied to Eukaryotic Genomes
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e237.
    by Juan A Ranea, Corin Yeats, Alastair Grant, Christine A Orengo
  • Using Likelihood-Free Inference to Compare Evolutionary Dynamics of the Protein Networks of H. pylori and P. falciparum
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e230.
    by Oliver Ratmann, Ole Jørgensen, Trevor Hinkley, Michael Stumpf, Sylvia Richardson, Carsten Wiuf
  • MORPH: Probabilistic Alignment Combined with Hidden Markov Models of cis-Regulatory Modules
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e216.
    by Saurabh Sinha, Xin He
  • Detecting Coevolution in and among Protein Domains
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e211.
    by Chen-Hsiang Yeang, David Haussler
  • Clustering by soft-constraint affinity propagation: applications to gene-expression data
    Bioinformatics, Vol. 23, No. 20. (15 October 2007), pp. 2708-2715.
    by Michele Leone, Sumedha, Martin Weigt
  • A forest-based approach to identifying gene and gene gene interactions
    Proceedings of the National Academy of Sciences (28 November 2007), 0709868104.
    by Xiang Chen, Ching-Ti Liu, Meizhuo Zhang, Heping Zhang
  • Predicting protein function from sequence and structure
    Nat Rev Mol Cell Biol, Vol. 8, No. 12. (December 2007), pp. 995-1005.
    by David Lee, Oliver Redfern, Christine Orengo
  • Insertional polymorphisms: a new lease of life for endogenous retroviruses in human disease.
    Trends Genet (22 May 2007)
    by David Moyes, David J J Griffiths, Patrick J J Venables
  • Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
    Nature, Vol. 450, No. 7167., pp. 219-232.
    by Alexander Stark, Michael F Lin, Pouya Kheradpour, Jakob S Pedersen, Leopold Parts, Joseph W Carlson, Madeline A Crosby, Matthew D Rasmussen, Sushmita Roy, Ameya N Deoras, Graham J Ruby, Julius Brennecke, Harvard F Curators, Berkeley, Emily Hodges, Angie S Hinrichs, Anat Caspi, Benedict Paten, Seung-Won Park, Mira V Han, Morgan L Maeder, Benjamin J Polansky, Bryanne E Robson, Stein Aerts, Jacques van Helden, Bassem Hassan, Donald G Gilbert, Deborah A Eastman, Michael Rice, Michael Weir, Matthew W Hahn, Yongkyu Park, Colin N Dewey, Lior Pachter, James W Kent, David Haussler, Eric C Lai, David P Bartel, Gregory J Hannon, Thomas C Kaufman, Michael B Eisen, Andrew G Clark, Douglas Smith, Susan E Celniker, William M Gelbart, Manolis Kellis
  • Evolution of genes and genomes on the Drosophila phylogeny
    Nature, Vol. 450, No. 7167. (November 2007), pp. 203-218.
  • Quantification of ortholog losses in insects and vertebrates.
    Genome Biology, Vol. 8 (16 November 2007), R242.
    by Stefan Wyder, Evgenia V Kriventseva, Reinhard Schroder, Tatsuhiko Kadowaki, Evgeny M Zdobnov
  • Common sense for our genomes
    Nature, Vol. 449, No. 7164. (18 October 2007), pp. 783-784.
    by Steven E Brenner
  • A comparison of Affymetrix gene expression arrays
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Mark Robinson, Terence Speed
    posted to 2007 array gene_expression_array human by hpaces on 2007-11-16 14:53:56 as ** along with 2 people jfr waszak
  • The Evolutionary Consequences of Polyploidy
    cell
    posted to 2007 evolution genomics review by hpaces on 2007-11-16 14:51:20 as ** along with 1 person zwang
  • Evolutionary Genomics: Transdomain Gene Transfers
    Current Biology, Vol. 17, No. 21. (6 November 2007), pp. R935-R936.
    by Seth R Bordenstein
  • Inferring genome-scale rearrangement phylogeny and ancestral gene order: A Drosophila case study
    Genome Biology, Vol. 8 (08 November 2007), R236.
    by Arjun Bhutkar, William M Gelbart, Temple F Smith
  • The Global Landscape of Sequence Diversity
    Genome Biology, Vol. 8 (08 November 2007), R238.
    by Jose M Peregrin-Alvarez, John Parkinson
  • Executable cell biology
    Nat Biotech, Vol. 25, No. 11. (November 2007), pp. 1239-1249.
    by Jasmin Fisher, Thomas A Henzinger
  • Chromatin rules
    Nature Structural & Molecular Biology, Vol. 14, No. 11., pp. 986-988.
    by Roger D Kornberg, Yahli Lorch
    posted to 2007 chromatin review by hpaces on 2007-11-06 15:55:28 as **** along with 1 person aalibes
  • Extracting gene expression patterns and identifying co-expressed genes from microarray data reveals biologically responsive processes
    BMC Bioinformatics, Vol. 8 (02 November 2007), 427.
    by Jeff W Chou, Tong Zhou, William K Kaufmann, Richard S Paules, Pierre R Bushel
    posted to 2007 algorithm array clustering software by hpaces on 2007-11-06 15:04:17 as ** along with 2 people shigepong dps
  • A Gene Regulatory Network Subcircuit Drives a Dynamic Pattern of Gene Expression
    Science, Vol. 318, No. 5851. (2 November 2007), pp. 794-797.
    by Joel Smith, Christina Theodoris, Eric H Davidson
  • Molecular and Genomic Data Identify the Closest Living Relative of Primates
    Science, Vol. 318, No. 5851. (2 November 2007), pp. 792-794.
    by Jan E Janecka, Webb Miller, Thomas H Pringle, Frank Wiens, Annette Zitzmann, Kristofer M Helgen, Mark S Springer, William J Murphy
  • The determinants of gene order conservation in yeasts
    Genome Biology, Vol. 8 (05 November 2007), R233.
    by Juan F Poyatos, Laurence D Hurst
  • Organization and Evolution of Primate Centromeric DNA from Whole-Genome Shotgun Sequence Data
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e181.
    by Can Alkan, Mario Ventura, Nicoletta Archidiacono, Mariano Rocchi, Cenk S Sahinalp, Evan E Eichler
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