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hpaces library [107 articles]

最近 hpaces さんのライブラリ .
  • Structural divergence between the human and chimpanzee genomes
    Human Genetics, Vol. 120, No. 6. (January 2007), pp. 759-778.
  • Chromosomal speciation of humans and chimpanzees revisited: studies of DNA divergence within inverted regions.
    Cytogenetic and genome research, Vol. 116, No. 1-2. (2007), pp. 53-60.
    posted to human genome_organisation chimp 2007 by hpaces on 2008-07-17 08:45:11 as **
  • Molecular mechanisms of chromosomal rearrangement during primate evolution.
    Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, Vol. 16, No. 1. (2008), pp. 41-56.
    posted to human gene_organisation evolution chimp 2008 by hpaces on 2008-07-17 08:40:51 as **
  • DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis
    BMC Bioinformatics, Vol. 8 (02 November 2007), 426.
    by Brad T Sherman, Da W Huang, Qina Tan, Yongjian Guo, Stephan Bour, David Liu, Robert Stephens, Michael W Baseler, Clifford H Lane, Richard A Lempicki
  • Recent acceleration of human adaptive evolution
    Proceedings of the National Academy of Sciences, Vol. 104, No. 52. (26 December 2007), pp. 20753-20758.
    by John Hawks, Eric T Wang, Gregory M Cochran, Henry C Harpending, Robert K Moyzis
  • Beyond species: Il'ya Ivanov and his experiments on cross-breeding humans and anthropoid apes.
    Science in context, Vol. 15, No. 2. (June 2002), pp. 277-316.
    posted to human curiosity chimp 2002 by hpaces on 2008-07-17 08:26:17 as read
  • Beyond eugenics: the forgotten scandal of hybridizing humans and apes.
    Studies in history and philosophy of biological and biomedical sciences, Vol. 39, No. 2. (June 2008), pp. 205-210.
    by A Etkind
    posted to chuman chimp 2008 by hpaces on 2008-07-16 11:08:26 as **
  • Diversity of microRNAs in human and chimpanzee brain.
    Nat Genet (29 October 2006)
    by Eugene Berezikov, Fritz Thuemmler, Linda W W van Laake, Ivanela Kondova, Ronald Bontrop, Edwin Cuppen, Ronald H A H Plasterk
  • Mammalian mirtron genes.
    Mol Cell, Vol. 28, No. 2. (26 October 2007), pp. 328-336.
    by E Berezikov, WJ Chung, J Willis, E Cuppen, EC Lai
    posted to mirna mammal 2007 by hpaces on 2008-07-16 08:00:59 as * along with 3 people ale dchughes cabbagezs
  • Inter- and intra-combinatorial regulation by transcription factors and microRNAs
    BMC Genomics, Vol. 8 (30 October 2007), 396.
    by Yiming Zhou, John Ferguson, Joseph T Chang, Yuval Kluger
  • Identification and Classification of Conserved RNA Secondary Structures in the Human Genome.
    PLoS Comput Biol, Vol. 2, No. 4. (21 April 2006)
    by Jakob Skou S Pedersen, Gill Bejerano, Adam Siepel, Kate Rosenbloom, Kerstin Lindblad-Toh, Eric S S Lander, Jim Kent, Webb Miller, David Haussler
  • Primate MicroRNAs miR-220 and miR-492 Lie within Processed Pseudogenes
    Journal of Heredity, Vol. 97, No. 2. (15 March 2006), pp. 186-190.
    by Devor, J Eric
    posted to retroelement mirna human comparative_genomics chimp 2006 by hpaces on 2008-07-16 07:17:51 as **
  • Initial sequence and comparative analysis of the cat genome
    Genome Res., Vol. 17, No. 11. (1 November 2007), pp. 1675-1689.
    by Joan U Pontius, James C Mullikin, Douglas R Smith, Agencourt S Team, Kerstin Lindblad-Toh, Sante Gnerre, Michele Clamp, Jean Chang, Robert Stephens, Beena Neelam, Natalia Volfovsky, Alejandro A Schaffer, Richa Agarwala, Kristina Narfstrom, William J Murphy, Urs Giger, Alfred L Roca, Agostinho Antunes, Marilyn Menotti-Raymond, Naoya Yuhki, Jill Pecon-Slattery, Warren E Johnson, Guillaume Bourque, Glenn Tesler, Nisc, Stephen J O'Brien
  • 'Chumanzee' evolution: the urge to diverge and merge
    Genome Biology, Vol. 7 (24 November 2006), 240.
    by Todd R Disotell
  • Understanding the recent evolution of the human genome: insights from human-chimpanzee genome comparisons
    Human Mutation, Vol. 28, No. 2. (2007), pp. 99-130.
    by Hildegard Kehrer-Sawatzki, David N Cooper
  • The new paradigm of flow cell sequencing
    Genome Res., Vol. 18, No. 6. (1 June 2008), pp. 839-846.
    by Robert A Holt, Steven J Jones
  • The impact of next-generation sequencing technology on genetics
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Elaine R Mardis
  • From The Cover: An algorithm for progressive multiple alignment of sequences with insertions
    PNAS, Vol. 102, No. 30. (26 July 2005), pp. 10557-10562.
    by Ari Loytynoja, Nick Goldman
  • Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis
    Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635.
    by Ari Loytynoja, Nick Goldman
  • Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat
    Mol Syst Biol, Vol. 4 (3 June 2008)
    by Victor Kunin, Jeroen Raes, Kirk J Harris, John R Spear, Jeffrey J Walker, Natalia Ivanova, Christian von Mering, Brad M Bebout, Norman R Pace, Peer Bork, Philip Hugenholtz
    posted to metagenomics 2008 by hpaces on 2008-06-05 10:06:27 as read
  • KEGG for linking genomes to life and the environment
    Nucl. Acids Res. (12 December 2007), gkm882.
    by Minoru Kanehisa, Michihiro Araki, Susumu Goto, Masahiro Hattori, Mika Hirakawa, Masumi Itoh, Toshiaki Katayama, Shuichi Kawashima, Shujiro Okuda, Toshiaki Tokimatsu, Yoshihiro Yamanishi
  • Vir-Mir db: prediction of viral microRNA candidate hairpins.
    Nucleic acids research, Vol. 36, No. Database issue. (January 2008)
    by SC Li, CK Shiau, WC Lin
    posted to mirna database bioinformatics 2008 by hpaces on 2008-05-11 16:11:41 as **
  • What is a gene, post-ENCODE? History and updated definition.
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 669-681.
    by MB Gerstein, C Bruce, JS Rozowsky, D Zheng, J Du, JO Korbel, O Emanuelsson, ZD Zhang, S Weissman, M Snyder
  • Genome analysis of the platypus reveals unique signatures of evolution
    Nature, Vol. 453, No. 7192. (May 2008), pp. 175-183.
  • Mapping and sequencing of structural variation from eight human genomes
    Nature, Vol. 453, No. 7191., pp. 56-64.
    by Jeffrey M Kidd, Gregory M Cooper, William F Donahue, Hillary S Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, Alice N Yamada, Peter Tsang, Tera L Newman, Eray Tüzün, Ze Cheng, Heather M Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin Mckernan, Lin Chen, Maika Malig, Joshua D Smith, Joshua M Korn, Steven A Mccarroll, David A Altshuler, Daniel A Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A Nickerson, James C Mullikin, Richard K Wilson, Laurakay Bruhn, Maynard V Olson, Rajinder Kaul, Douglas R Smith, Evan E Eichler
  • Poor prognosis in carcinoma is associated with a gene expression signature of aberrant PTEN tumor suppressor pathway activity.
    Proc Natl Acad Sci U S A, Vol. 104, No. 18. (1 May 2007), pp. 7564-7569.
  • What is principal component analysis?
    Nature Biotechnology, Vol. 26, No. 3., pp. 303-304.
    by Markus Ringnér
  • Sequencing and analysis of Neanderthal genomic DNA.
    Science, Vol. 314, No. 5802. (17 November 2006), pp. 1113-1118.
    by JP Noonan, G Coop, S Kudaravalli, D Smith, J Krause, J Alessi, F Chen, D Platt, S Pääbo, JK Pritchard, EM Rubin
  • Reconstructing phylogenies and phenotypes: a molecular view of human evolution
    Journal of Anatomy, Vol. 212, No. 4. (April 2008), pp. 337-353.
    posted to 2008 chimp comparative_genomics evolution genome human phylogeny by hpaces on 2008-04-10 15:51:39 as **
  • ALLPATHS: De novo assembly of whole-genome shotgun microreads.
    Genome Res (13 March 2008)
    by Jonathan Butler, Iain Maccallum, Michael Kleber, Ilya A A Shlyakhter, Matthew K K Belmonte, Eric S S Lander, Chad Nusbaum, David B B Jaffe
  • An evaluation of human protein-protein interaction data in the public domain
    BMC Bioinformatics, Vol. 7, No. Suppl 5. (2006)
    by Suresh Mathivanan, Balamurugan Periaswamy, TKB Gandhi, Kumaran Kandasamy, Shubha Suresh, Riaz Mohmood, YL Ramachandra, Akhilesh Pandey
  • The Diploid Genome Sequence of an Individual Human
    PLoS Biology, Vol. 5, No. 10. (1 October 2007), e254.
    by Samuel Levy, Granger Sutton, Pauline C Ng, Lars Feuk, Aaron L Halpern, Brian P Walenz, Nelson Axelrod, Jiaqi Huang, Ewen F Kirkness, Gennady Denisov, Yuan Lin, Jeffrey R Macdonald, Andy W Pang, Mary Shago, Timothy B Stockwell, Alexia Tsiamouri, Vineet Bafna, Vikas Bansal, Saul A Kravitz, Dana A Busam, Karen Y Beeson, Tina C Mcintosh, Karin A Remington, Josep F Abril, John Gill, Jon Borman, Yu-Hui Rogers, Marvin E Frazier, Stephen W Scherer, Robert L Strausberg, Craig J Venter
  • DNA sequencing: bench to bedside and beyond.
    Nucleic Acids Res (12 September 2007)
    by Clyde A A Hutchison
  • Discovering Motifs in Ranked Lists of DNA Sequences
    PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e39.
    by Eran Eden, Doron Lipson, Sivan Yogev, Zohar Yakhini
  • Ringo - an R/Bioconductor package for analyzing ChIP-chip readouts
    BMC Bioinformatics, Vol. 8 (26 June 2007), 221.
    by Joern Toedling, Oleg Sklyar, Wolfgang Huber
  • Multiple alignment of protein sequences with repeats and rearrangements
    Nucleic Acids Research, Vol. 34, No. 20. (November 2006), pp. 5932-5942.
    posted to 2006 algorithm multiple_alignment software by hpaces on 2008-01-29 10:49:51 as ***
  • Automated generation of heuristics for biological sequence comparison
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by Guy Slater, Ewan Birney
  • Chaos game representation for comparison of whole genomes
    BMC Bioinformatics, Vol. 7, No. 1. (2006)
    by Jijoy Joseph, Roschen Sasikumar
  • The ENCODE (ENCyclopedia Of DNA Elements) Project.
    Science, Vol. 306, No. 5696. (22 October 2004), pp. 636-640.
    by E Encode
  • Genomic plasticity in prokaryotes: the case of the square haloarchaeon.
    ISME J, Vol. 1, No. 3. (July 2007), pp. 235-245.
    posted to 2007 bacteria genome by hpaces on 2007-12-11 09:50:27 as ** along with 3 people operon jmeppley balicea
  • Long-term evolution of transposable elements
    Proceedings of the National Academy of Sciences (26 November 2007), 0705238104.
    by Arnaud Le Rouzic, Thibaud S Boutin, Pierre Capy
  • Herpesviral Protein Networks and Their Interaction with the Human Proteome
    Science, Vol. 311, No. 5758. (13 January 2006), pp. 239-242.
    by Peter Uetz, Yu-An Dong, Christine Zeretzke, Christine Atzler, Armin Baiker, Bonnie Berger, Seesandra V Rajagopala, Maria Roupelieva, Dietlind Rose, Even Fossum, Jurgen Haas
    posted to 2006 human networks virus by hpaces on 2007-12-11 09:40:52 as ** along with 1 person zukeboy
  • Comparative analysis of the complete genome sequence of the plant growth–promoting bacterium Bacillus amyloliquefaciens FZB42
    Nature Biotechnology, Vol. 25, No. 9. (19 August 2007), pp. 1007-1014.
    by Xiao H Chen, Alexandra Koumoutsi, Romy Scholz, Andreas Eisenreich, Kathrin Schneider, Isabelle Heinemeyer, Burkhard Morgenstern, Björn Voss, Wolfgang R Hess, Oleg Reva, Helmut Junge, Birgit Voigt, Peter R Jungblut, Joachim Vater, Roderich Süssmuth, Heiko Liesegang, Axel Strittmatter, Gerhard Gottschalk, Rainer Borriss
    posted to 2007 bacteria comparative_genomics genome by hpaces on 2007-12-11 09:08:23 as ** along with 1 person skhadar
  • Genome-wide transcriptional changes in Streptococcus gordonii in response to competence signaling peptide.
    J Bacteriol, Vol. 189, No. 21. (November 2007), pp. 7799-7807.
    by MM Vickerman, S Iobst, AM Jesionowski, SR Gill
    posted to 2007 bacteria genome by hpaces on 2007-12-11 09:07:05 as **
  • The complete genome sequence of Campylobacter jejuni strain 81116 (NCTC11828).
    J Bacteriol, Vol. 189, No. 22. (November 2007), pp. 8402-8403.
    by BM Pearson, DJ Gaskin, RP Segers, JM Wells, PJ Nuijten, AH van Vliet
    posted to 2007 bacteria genome by hpaces on 2007-12-11 09:04:39 as **
  • Paradoxical DNA Repair and Peroxide Resistance Gene Conservation in Bacillus pumilus SAFR-032.
    PLoS ONE, Vol. 2, No. 9. (2007)
    posted to 2007 bacteria genome by hpaces on 2007-12-11 09:03:33 as **
  • Identification of disulfide reductases in Campylobacterales: a bioinformatics investigation.
    Antonie Van Leeuwenhoek, Vol. 92, No. 4. (November 2007), pp. 429-441.
    posted to 2007 bacteria bioinformatics comparative_genomics genome by hpaces on 2007-12-11 09:02:55 as **
  • Lateral gene transfer between obligate intracellular bacteria: Evidence from the Rickettsia massiliae genome
    Genome Res., Vol. 17, No. 11. (1 November 2007), pp. 1657-1664.
    by Guillaume Blanc, Hiroyuki Ogata, Catherine Robert, Stephane Audic, Jean-Michel Claverie, Didier Raoult
    posted to 2007 bacteria genome horizontal_transfer by hpaces on 2007-12-11 09:00:10 as * along with 1 person operon
  • Rhizobial factors required for stem nodule maturation and maintenance in Sesbania rostrata-Azorhizobium caulinodans ORS571 symbiosis.
    Appl Environ Microbiol, Vol. 73, No. 20. (October 2007), pp. 6650-6659.
    by S Suzuki, T Aono, KB Lee, T Suzuki, CT Liu, H Miwa, S Wakao, T Iki, H Oyaizu
    posted to 2007 bacteria genome by hpaces on 2007-12-11 08:59:09 as *
  • Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.
    Appl Environ Microbiol, Vol. 70, No. 7. (July 2004), pp. 4053-4063.
    by D Schleheck, TP Knepper, K Fischer, AM Cook
    posted to 2004 bacteria genome by hpaces on 2007-12-11 08:53:02 as **
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