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helliontroy library [156 articles]

最近 helliontroy さんのライブラリ .
  • Chemical vocabularies and ontologies for bioinformatics
    pp. 144-162.
    by K Degtyarenko
    posted to hlj-alignerror hlj-ontalign ontology by helliontroy on 2006-12-28 19:20:34 as ** along with 1 group biomedical-nlp
  • Creating the gene ontology resource: design and implementation.
    Genome Res, Vol. 11, No. 8. (August 2001), pp. 1425-1433.
    by
    posted to hlj-alignerror hlj-ontalign ontology by helliontroy on 2006-12-28 19:14:45 as ** along with 5 people and 1 group dgront marck CitoJam sgoetz PunkRock biomedical-nlp
  • Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
    Nat Genet, Vol. 25, No. 1. (May 2000), pp. 25-29.
    by M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
    posted to hlj-alignerror hlj-ontalign ontology by helliontroy on 2006-12-28 19:13:47 as ** along with 31 people and 5 groups dgront marck carlk pablomendes CitoJam aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp caporaso zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele kdl Bioinformatics EisenLab T_lab biomedical-nlp
  • Mapping data elements to terminological resources for integrating biomedical data sources
    BMC Bioinformatics, Vol. 7, No. Suppl 3. (2006)
    by Fleur Mougin, Anita Burgun, Olivier Bodenreider
    posted to ontology by helliontroy on 2006-12-14 21:13:38 as ***** along with 1 group biomedical-nlp
  • Negation in English Speech and Writing: A Study in Variation
    Language, Vol. 69, No. 3. (1993), pp. 590-593.
    by Gunnel Tottie
    posted to negation by helliontroy on 2006-12-06 21:59:08 as ** along with 1 group biomedical-nlp
  • Filling preposition-based templates to capture information from medical abstracts.
    Pac Symp Biocomput (2002), pp. 350-361.
    by G Leroy, H Chen
    posted to relation-extraction by helliontroy on 2006-12-06 21:45:53 as ***** along with 2 people and 2 groups yas mircea T_lab biomedical-nlp
  • A methodology for automatic term recognition
    (1994), pp. 1034-1038.
    by Sophia Ananiadou
    posted to entity-identification by helliontroy on 2006-12-06 20:31:13 as read along with 1 group biomedical-nlp
  • A shallow parser based on closed-class words to capture relations in biomedical text.
    J Biomed Inform, Vol. 36, No. 3. (June 2003), pp. 145-158.
    by G Leroy, H Chen, JD Martinez
    posted to coordination negation relation-extraction by helliontroy on 2006-12-06 18:52:38 as ** along with 1 person and 2 groups irenas dbk-lab biomedical-nlp
  • BRENDA, the enzyme database: updates and major new developments.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by I Schomburg, A Chang, C Ebeling, M Gremse, C Heldt, G Huhn, D Schomburg
    posted to hlj-alignerror by helliontroy on 2006-12-06 18:29:31 as ** along with 4 people and 2 groups sim82 alexg jberro shung biomedical-nlp Projet_ENSIMAG
  • Automatic sense disambiguation using machine readable dictionaries: how to tell a pine cone from an ice cream cone
    (1986), pp. 24-26.
    by Michael Lesk
    posted to hlj-alignerror by helliontroy on 2006-12-06 18:25:32 as ** along with 2 people and 1 group hehrig sboisen biomedical-nlp
  • Evaluation of lexical methods for detecting relationships between concepts from multiple ontologies.
    Pac Symp Biocomput (2006), pp. 28-39.
    by HL Johnson, KB Cohen, WA Baumgartner, Z Lu, M Bada, T Kester, H Kim, L Hunter
    posted to hlj-alignerror me by helliontroy on 2006-12-06 18:24:15 as ** along with 1 person and 1 group dullhunk biomedical-nlp
  • A Resource for Constructing Customized Test Suites for Molecular Biology Entity Identification Systems
    (May June 2004), pp. 1-8.
    by Bretonnel K Cohen, Lorraine Tanabe, Shuhei Kinoshita, Lawrence Hunter
    edited by Lynette Hirschman, James Pustejovsky
    posted to hlj-alignerror by helliontroy on 2006-12-06 18:17:12 as ** along with 1 group biomedical-nlp
  • Abbreviations in biomedical text
    (2006), pp. 99-119.
    by Jt Chang, H Schutze
    edited by S Ananiadou, J Mcnaught
    posted to hlj-alignerror by helliontroy on 2006-12-06 18:15:19 as ** along with 1 group biomedical-nlp
  • An ontology for cell types.
    Genome Biol, Vol. 6, No. 2. (2005)
    by J Bard, SY Rhee, M Ashburner
    posted to hlj-alignerror hlj-ontalign ontology by helliontroy on 2006-12-06 18:10:40 as ** along with 3 people and 2 groups setar yas josepe T_lab biomedical-nlp
  • Concept Recognition, Information Retrieval, and Machine Learning in Genomics Question-Answering
    (2006)
    by Gregory J Caporaso, William A Baumgartner, Hyunmin Kim, Zhiyong Lu, Helen L Johnson, Olga Medvedeva, Anna Lindemann, Lynne Fox, Elizabeth K White, Bretonnel K Cohen, Lawrence Hunter
    posted to trec06 by helliontroy on 2006-12-04 21:42:18 as ** along with 1 person and 1 group caporaso biomedical-nlp
  • Biomedical information extraction with predicate-argument structure patterns
    (2005)
    by Akane Yakushiji, Yusuke Miyao, Yuka Tateisi, Junichi Tsujii
    posted to pas by helliontroy on 2006-11-28 00:43:47 as ** along with 1 group biomedical-nlp
  • Bootstrapping the recognition and anaphoric linking of named entities in Drosophila articles.
    Pac Symp Biocomput (2006), pp. 100-111.
    by A Vlachos, C Gasperin, I Lewin, T Briscoe
    posted to psb06 by helliontroy on 2006-11-28 00:37:41 as ** along with 2 people and 1 group balex vlachmore biomedical-nlp
  • The potential use of SUISEKI as a protein interaction discovery tool.
    Genome Inform, Vol. 12 (2001), pp. 123-134.
    by C Blaschke, A Valencia
    posted to ppi by helliontroy on 2006-11-28 00:36:45 as ** along with 1 group biomedical-nlp
  • Bayesian models of human sentence processing
    (1998)
    by N Srini, D Jurafsky
    posted to review by helliontroy on 2006-11-28 00:35:46 as ** along with 1 person and 1 group spinaltap526 biomedical-nlp
  • Automatic labeling of semantic roles
    Comput. Linguist., Vol. 28, No. 3. (September 2002), pp. 245-288.
    by Daniel Gildea, Daniel Jurafsky
    posted to semantic-label by helliontroy on 2006-11-28 00:34:48 as ***** along with 4 people and 1 group lillejul aliku bhaddow rion biomedical-nlp
  • Linking molecular function and biological process terms in the ontology for gene expression data analysis
    Engineering in Medicine and Biology Society, 2004. EMBC 2004. Conference Proceedings. 26th Annual International Conference of the, Vol. 2 (2004), pp. 2984-2986 Vol.4.
    by M Dejongh, P Van Dort, B Ramsay
    posted to ontology by helliontroy on 2006-11-28 00:30:10 as ** along with 1 group biomedical-nlp
  • A baseline feature set for learning rhetorical zones using full articles in the biomedical domain
    SIGKDD Explor. Newsl., Vol. 7, No. 1. (June 2005), pp. 52-58.
    by Tony Mullen, Yoko Mizuta, Nigel Collier
    posted to fulltext-discourse by helliontroy on 2006-11-28 00:24:56 as ***** along with 2 people and 2 groups yas caporaso T_lab biomedical-nlp
  • Zone analysis in biology articles as a basis for information extraction.
    Int J Med Inform (17 August 2005)
    by Yoko Mizuta, Anna Korhonen, Tony Mullen, Nigel Collier
    posted to fulltext-discourse by helliontroy on 2006-11-28 00:23:58 as ***** along with 1 person and 2 groups yas T_lab biomedical-nlp
  • Gene name extraction using FlyBase resources
    (2003), pp. 1-8.
    by Alex Morgan, Lynette Hirschman, Alexander Yeh, Marc Colosimo
    posted to entity-identification by helliontroy on 2006-11-28 00:19:06 as ** along with 1 person and 1 group vlachmore biomedical-nlp
  • A relevance detection approach to gene annotation
    by Wen-Juan Hou, Chin Lee, Kevin H Lin, Hsin-Hsi Chen
    posted to annotation by helliontroy on 2006-11-28 00:17:02 as ** along with 1 group biomedical-nlp
  • Classifying Biological Full-Text Articles for Multi-Database Curation.
    (2006)
    by Wen J Hou, Chih Lee, Hsin H Chen
    posted to fulltext-use by helliontroy on 2006-11-28 00:15:41 as ***** along with 1 group biomedical-nlp
  • Automatically Generating Extraction Patterns from Untagged Text
    (1996), pp. 1044-1049.
    by Ellen Riloff
    posted to patterns by helliontroy on 2006-11-28 00:10:39 as ** along with 1 person and 1 group scis0000001 biomedical-nlp
  • The effect of textual variation on concept based information retrieval.
    Proc AMIA Annu Fall Symp (1996), pp. 373-377.
    by AR Aronson
    posted to variation by helliontroy on 2006-11-28 00:08:32 as ** along with 1 group biomedical-nlp
  • A comparison of string distance metrics for name-matching tasks
    (2003)
    by W Cohen, P Ravikumar, S Fienberg
    posted to string-distance by helliontroy on 2006-11-28 00:07:01 as ** along with 3 people and 1 group ssn pdlug seabay biomedical-nlp
  • Phenogo: assigning phenotypic context to gene ontology annotations with natural language processing.
    Pac Symp Biocomput (2006), pp. 64-75.
    by Y Lussier, T Borlawsky, D Rappaport, Y Liu, C Friedman
    posted to psb06 by helliontroy on 2006-11-28 00:04:04 as ** along with 3 people and 1 group fisherp aconesa sgoetz biomedical-nlp
  • Obol: integrating language and meaning in bio-ontologies
    Comparative and Functional Genomics, Vol. 5, No. 6-7. (August 2004), 509.
    by Christopher J Mungall
    posted to ontology by helliontroy on 2006-11-28 00:02:38 as read along with 1 group biomedical-nlp
  • TnT -- A Statistical Part-of-Speech Tagging
    pp. 1-17.
    by Thorsten Brants
    posted to pos by helliontroy on 2006-11-27 23:59:19 as ** along with 1 group biomedical-nlp
  • Word sense disambiguation criteria: a systematic study
    Vol. 20 (2004)
    by Laurent Audibert
    posted to wsd by helliontroy on 2006-11-27 23:55:51 as ** along with 1 group biomedical-nlp
  • Automatically generating gene summaries from biomedical literature.
    Pac Symp Biocomput (2006), pp. 40-51.
    by X Ling, J Jiang, X He, Q Mei, C Zhai, B Schatz
    posted to grif psb06 summary by helliontroy on 2006-11-27 23:52:33 as read along with 1 group biomedical-nlp
  • Large-scale testing of bibliome informatics using Pfam protein families.
    Pac Symp Biocomput (2006), pp. 76-87.
    by AG Maguitman, A Rechtsteiner, K Verspoor, CE Strauss, LM Rocha
    posted to entity-identification evaluation psb06 by helliontroy on 2006-11-27 23:50:21 as read along with 1 group biomedical-nlp
  • Measures of semantic similarity and relatedness in the biomedical domain
    Journal of Biomedical Informatics, Vol. In Press, Corrected Proof
    by Ted Pedersen, Serguei V Pakhomov, Siddharth Patwardhan, Christopher G Chute
    posted to no-tag by helliontroy on 2006-11-27 23:46:58 as ***** along with 2 people and 3 groups ejmeij RockHI biomedical-nlp ilps LanguageModeling
  • A sentence sliding window approach to extract protein annotations from biomedical articles.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by M Krallinger, M Padron, A Valencia
    posted to biocreative04 by helliontroy on 2006-11-27 23:33:32 as read along with 1 person and 1 group yggdrasil biomedical-nlp
  • A system for identifying named entities in biomedical text: how results from two evaluations reflect on both the system and the evaluations: Conference Papers
    Comp. Funct. Genomics, Vol. 6, No. 1-2. (2005), pp. 77-85.
    by Shipra Dingare, Malvina Nissim, Jenny Finkel, Christopher Manning, Claire Grover
    posted to biocreative04 by helliontroy on 2006-11-27 23:30:42 as read along with 2 people and 1 group alanrw vlachmore biomedical-nlp
  • Finding genomic ontology terms in text using evidence content.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by FM Couto, MJ Silva, PM Coutinho
    posted to biocreative04 by helliontroy on 2006-11-27 23:28:59 as read along with 4 people and 3 groups yggdrasil irenas oannes josepe dbk-lab biomedical-nlp Regulomics_UCHSC
  • Extracting functional annotations of proteins based on hybrid text mining approaches
    (2005)
    by Jung-Hsien Chiang, Hsu-Chun Yu
    posted to biocreative04 by helliontroy on 2006-11-27 23:26:37 as read along with 1 group biomedical-nlp
  • An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by EB Camon, DG Barrell, EC Dimmer, V Lee, M Magrane, J Maslen, D Binns, R Apweiler
    posted to biocreative04 by helliontroy on 2006-11-27 23:20:58 as read along with 4 people and 2 groups yggdrasil yas CitoJam adoms T_lab biomedical-nlp
  • Evaluation of BioCreAtIvE assessment of task 2.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by C Blaschke, EA Leon, M Krallinger, A Valencia
    posted to biocreative04 by helliontroy on 2006-11-27 23:19:41 as read along with 3 people and 2 groups yggdrasil yas zlu T_lab biomedical-nlp
  • The Dative/Ergative Connection
    by Miriam Butt
    posted to theory by helliontroy on 2006-11-27 19:24:00 as ** along with 1 group biomedical-nlp
  • Extracting semantic predications from Medline citations for pharmacogenomics
    No. 12. (2007), pp. 209-220.
    by Caroline Ahlers, Marcelo Fiszman, Dina Demner-Fushman, Francois-Michel Lang, Thomas Rindflesch
    posted to relation-extraction by helliontroy on 2006-11-22 17:52:25 as read along with 1 person and 1 group josepe biomedical-nlp
  • Annotating genes using textual patterns
    No. 12. (2007), pp. 221-232.
    by Ali Cakmak, Gultekin Ozsoyoglu
    posted to abstract annotation go pattern by helliontroy on 2006-11-20 20:02:13 as read along with 1 group biomedical-nlp
  • Information extraction in molecular biology.
    Brief Bioinform, Vol. 3, No. 2. (June 2002), pp. 154-165.
    by C Blaschke, L Hirschman, A Valencia
    posted to fulltext-discourse by helliontroy on 2006-11-17 18:20:24 as ***** along with 4 people and 3 groups irenas Enro kuhn yas dbk-lab T_lab biomedical-nlp
  • Text mining and ontologies in biomedicine: making sense of raw text.
    Brief Bioinform, Vol. 6, No. 3. (September 2005), pp. 239-251.
    by I Spasic, S Ananiadou, J Mcnaught, A Kumar
    posted to ontology review by helliontroy on 2006-11-10 23:01:08 as ***** along with 7 people and 3 groups yggdrasil irenas andytseng yas hpiwowar johnkork daniel_schober dbk-lab T_lab biomedical-nlp
  • Genescene: An ontology-enhanced integration of linguistic and co-occurrence based relations in biomedical texts: Research Articles
    J. Am. Soc. Inf. Sci. Technol., Vol. 56, No. 5. (March 2005), pp. 457-468.
    by Gondy Leroy, Hsinchun Chen
    posted to chunker co-occurrence nominalization ontology preposition relation-extraction visualization by helliontroy on 2006-11-09 21:05:52 as ** along with 2 people and 2 groups yggdrasil irenas dbk-lab biomedical-nlp
  • Robust relational parsing over biomedical literature: extracting inhibit relations.
    Pac Symp Biocomput (2002), pp. 362-373.
    by J Pustejovsky, J Castaño, J Zhang, M Kotecki, B Cochran
    posted to no-tag by helliontroy on 2006-11-09 21:04:36 as ** along with 1 person and 1 group zlu biomedical-nlp
  • Automated extraction of information on protein-protein interactions from the biological literature.
    Bioinformatics, Vol. 17, No. 2. (February 2001), pp. 155-161.
    by T Ono, H Hishigaki, A Tanigami, T Takagi
    posted to no-tag by helliontroy on 2006-11-09 21:03:30 as ** along with 6 people and 3 groups yggdrasil irenas yas blackbart zlu bundschu T_lab biomedical-nlp generif_paper
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