Characterizing gene sets with FuncAssociate

@article{citeulike:1158625, abstract = {Summary: FuncAssociate is a web-based tool to help researchers use Gene Ontology attributes to characterize large sets of genes derived from experiment. Distinguishing features of FuncAssociate include the ability to handle ranked input lists, and a Monte Carlo simulation approach that is more appropriate to determine significance than other methods, such as Bonferroni or [IMG]f1.gif" BORDER="0">idak p-value correction. FuncAssociate currently supports 10 organisms (Vibrio cholerae, Shewanella oneidensis, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Arabidopsis thaliana, Caenorhaebditis elegans, Drosophila melanogaster, Mus musculus, Rattus norvegicus and Homo sapiens). Availability: FuncAssociate is freely accessible at http://llama.med.harvard.edu/Software.html. Source code (in Perl and C) is freely available to academic users as is'. 10.1093/bioinformatics/btg363}, author = {Berriz, Gabriel F. and King, Oliver D. and Bryant, Barbara and Sander, Chris and Roth, Frederick P. }, citeulike-article-id = {1158625}, doi = {http://dx.doi.org/10.1093/bioinformatics/btg363}, journal = {Bioinformatics}, keywords = {gene\_ontology, tools}, month = {December}, number = {18}, pages = {2502--2504}, posted-at = {2008-02-28 12:47:37}, priority = {2}, title = {Characterizing gene sets with FuncAssociate}, url = {http://dx.doi.org/10.1093/bioinformatics/btg363}, volume = {19}, year = {2003} }

TY - JOUR ID - citeulike:1158625 L3 - citeulike-article-id:1158625 TI - Characterizing gene sets with FuncAssociate JF - Bioinformatics VL - 19 IS - 18 SP - 2502 EP - 2504 N2 - Summary: FuncAssociate is a web-based tool to help researchers use Gene Ontology attributes to characterize large sets of genes derived from experiment. Distinguishing features of FuncAssociate include the ability to handle ranked input lists, and a Monte Carlo simulation approach that is more appropriate to determine significance than other methods, such as Bonferroni or [IMG]f1.gif" BORDER="0">idak p-value correction. FuncAssociate currently supports 10 organisms (Vibrio cholerae, Shewanella oneidensis, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Arabidopsis thaliana, Caenorhaebditis elegans, Drosophila melanogaster, Mus musculus, Rattus norvegicus and Homo sapiens). Availability: FuncAssociate is freely accessible at http://llama.med.harvard.edu/Software.html. Source code (in Perl and C) is freely available to academic users as is'. 10.1093/bioinformatics/btg363 KW - gene_ontology KW - tools AU - Berriz, Gabriel AU - King, Oliver AU - Bryant, Barbara AU - Sander, Chris AU - Roth, Frederick PY - 2003/12/12/ UR - http://dx.doi.org/10.1093/bioinformatics/btg363 ER -