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fishtank library [197 articles]

最近 fishtank さんのライブラリ (優先度順).
  • Evolution of Biological Networks (II) by Martin Lercher
    by Martin Lercher
    posted to biochemical_pathway evolution fba flux_regulation lecture-notes by fishtank on 2007-12-06 20:05:18 as *****
  • Approaches to Biosimulation of Cellular Processes
    Journal of Biological Physics, Vol. 32, No. 3-4. (October 2006), pp. 273-288.
    by Bruggeman, , Westerhoff,
    posted to kinetic_simulation-review by fishtank on 2007-09-26 18:37:20 as *****
  • Energy metabolism and biotransformation as endpoints to pre-screen hepatotoxicity using a liver spheroid model
    Toxicology and Applied Pharmacology, Vol. 216, No. 2. (15 October 2006), pp. 293-302.
    by Jinsheng Xu, Wendy M Purcell
    posted to disease galactose by fishtank on 2007-08-29 11:06:18 as *****
  • Glucocorticoids, metabolism and metabolic diseases
    Molecular and Cellular Endocrinology, Vol. 275, No. 1-2. (15 September 2007), pp. 43-61.
    by Alexandros Vegiopoulos, Stephan Herzig
    posted to diabetes disease by fishtank on 2007-08-29 10:53:38 as ***** along with 1 person jyuh
  • Mechanistic model of fuel selection in the muscle
    Journal of Theoretical Biology, Vol. 242, No. 1. (7 September 2006), pp. 151-163.
    by P de Beaudrap, G Witten, G Biltz, E Perrier
    posted to diabetes disease by fishtank on 2007-08-29 10:50:46 as *****
  • Computational approaches to cellular rhythms.
    Nature, Vol. 420, No. 6912. (14 November 2002), pp. 238-245.
    by A Goldbeter
    posted to oscillations by fishtank on 2007-08-25 21:11:13 as ***** along with 5 people and 2 groups camster rklancer Happybene johncumbers cerkut dbk-lab contact-id
  • From Biophysics to models of network function
    Annual Review of Neuroscience, Vol. 21 (1998), pp. 25-45.
    by Eve Marder
    posted to neuroscience-review by fishtank on 2007-08-25 21:07:12 as *****
  • Dynamic simulation of red blood cell metabolism and its application to the analysis of a pathological condition
    Theoretical Biology and Medical Modelling, Vol. 2, No. 1. (2005)
    by Yoichi Nakayama, Ayako Kinoshita, Masaru Tomita
    posted to disease kinetic_simulation by fishtank on 2007-09-14 23:34:05 as **** along with 1 person csanford
  • Microbial regulatory and metabolic networks.
    Curr Opin Biotechnol, Vol. 18, No. 4. (August 2007), pp. 360-364.
    by BK Cho, P Charusanti, MJ Herrgård, B Palsson
    posted to chip-chip expt-technique transcription-network by fishtank on 2007-09-27 01:44:19 as ***
  • Cancer: A Systems Biology disease
    Biosystems, Vol. In Press, Corrected Proof
    by Jorrit J Hornberg, Frank J Bruggeman, Hans V Westerhoff, Jan Lankelma
    posted to cancer systems_biology by fishtank on 2007-09-26 20:15:25 as *** along with 4 people and 1 group Borelli julius maburkitt frohike SysbioMPI-TCells
  • Cooperativity and saturation in biochemical networks: A saturable formalism using Taylor series approximations
    Biotechnology and Bioengineering, Vol. 97, No. 5. (2007), pp. 1259-1277.
    by Albert Sorribas, Benito Hernández-Bermejo, Ester Vilaprinyo, Rui Alves
    posted to rate_equation by fishtank on 2007-09-25 01:06:11 as *** along with 1 person Pascalichouchou
  • Optimal flux patterns in cellular metabolic networks
    Chaos: An Interdisciplinary Journal of Nonlinear Science, Vol. 17, No. 2. (2007)
    by Eivind Almaas
    posted to scale-free by fishtank on 2007-09-25 00:55:40 as *** along with 1 person ansobol
  • Myocardial Substrate Metabolism in the Normal and Failing Heart
    Physiol. Rev., Vol. 85, No. 3. (1 July 2005), pp. 1093-1129.
    by William C Stanley, Fabio A Recchia, Gary D Lopaschuk
    posted to myocardial by fishtank on 2007-09-21 19:43:11 as ***
  • Structural systems biology: modelling protein interactions
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 3., pp. 188-197.
    by Patrick Aloy, Robert B Russell
    posted to proteins_interactions by fishtank on 2007-09-20 00:45:36 as *** along with 19 people and 3 groups ana aalibes bicko xico dgront drastic choonpeng henschel ruvido massivemayhem cat_worth iris_2001 gvuister lpfernandes Evangelia andreas_foersch higueruelo chad_davis jteyra structural_bioinformatics Bioinformatics WetBiology
  • Network biology: understanding the cell's functional organization.
    Nat Rev Genet, Vol. 5, No. 2. (February 2004), pp. 101-113.
    by AL Barabási, ZN Oltvai
    posted to metabolic-review robustness scale-free by fishtank on 2007-09-04 04:07:54 as *** along with 34 people and 11 groups camster snuppepuppan dbk greg jyuh LeightonP hununu felciano mague kuhn textoris rhem1224 lfriedl balajis alexg wnpx jknabe adepace nickluscombe bundschu awooga jdiggans jeremymiller uprock timflutre mikaelhuss gcalda grahamc jayster4 naegele Evangelia heliopais shikin hryk streptomyces spliceml dbk-lab kdl EisenLab TCR_Signaling EBI-regulation SysbioMPI-TCells GeschwindLab generif_paper GeneGo
  • Systems Biology: Dynamic Pathway Modelling
    by Olaf Wolkenhauer
    posted to book modeling by fishtank on 2007-09-01 02:07:13 as ***
  • Methylotrophic Bacteria: Biochemical Diversity and Genetics
    Science, Vol. 221, No. 4616. (16 September 1983), pp. 1147-1153.
    by Christopher L Haber, Larry N Allen, Shujie Zhao, Richard S Hanson
    posted to methylotrophs by fishtank on 2007-08-27 08:51:18 as ***
  • Development of network-based pathway definitions: the need to analyze real metabolic networks.
    Trends Biotechnol, Vol. 21, No. 5. (May 2003), pp. 195-198.
    by BO Palsson, ND Price, JA Papin
    posted to metabolic fba by fishtank on 2007-02-02 02:00:56 as *** along with 1 person and 1 group camster dbk-lab
  • Development of network-based pathway definitions: the need to analyze real metabolic networks
    Trends in Biotechnology, Vol. 21, No. 5. (May 2003), pp. 195-198.
    by Bernhard O Palsson, Nathan D Price, Jason A Papin
    posted to metabolic by fishtank on 2007-02-01 08:25:17 as ***
  • Two approaches for metabolic pathway analysis?
    Trends in Biotechnology, Vol. 21, No. 2. (February 2003), pp. 64-69.
    by Steffen Klamt, Jorg Stelling
    posted to metabolic by fishtank on 2007-02-01 08:21:32 as ***
  • Metabolic networks in motion: 13C-based flux analysis
    Mol Syst Biol, Vol. 2 (14 November 2006)
    by Uwe Sauer
    posted to metabolic-review by fishtank on 2007-02-01 00:38:40 as *** along with 2 people and 1 group westoll JeremyZucker MetabolicModeling
  • Systems biology, metabolic modelling and metabolomics in drug discovery and development
    Drug Discovery Today, Vol. 11, No. 23-24. (December 2006), pp. 1085-1092.
    by Douglas B Kell
    posted to metabolic-review by fishtank on 2007-01-31 20:58:28 as *** along with 9 people and 2 groups irenas nicklynch alexg dullhunk mhucka raiyar shikin alanrw gemmalholliday steinmetzlab GeneGo
  • Synthetic biology--putting engineering into biology
    Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2790-2799.
    by Matthias Heinemann, Sven Panke
    posted to review by fishtank on 2007-01-31 20:47:06 as *** along with 6 people and 3 groups dbikard aalibes marcius jtaylor Freecat karfunkel SynBioSys BioinfoCIPF SGU-CIPF
  • The origin of allometric scaling laws in biology from genomes to ecosystems: towards a quantitative unifying theory of biological structure and organization
    J Exp Biol, Vol. 208, No. 9. (1 May 2005), pp. 1575-1592.
    by Geoffrey B West, James H Brown
    posted to principles by fishtank on 2007-01-31 20:43:30 as *** along with 1 person and 1 group livingthingdan livingthing
  • Cancer onset and progression: A genome-wide, nonlinear dynamical systems perspective on onconetworks.
    J Theor Biol, Vol. 246, No. 2. (21 May 2007), pp. 234-244.
    by K Qu, AA Haidar, J Fan, L Ensman, K Tuncay, M Jolly, P Ortoleva
    posted to cancer by fishtank on 2008-09-04 21:10:58 as ** along with 1 person jfr
  • On the Role of Physics in the Growth and Pattern Formation of Multi-Cellular Systems: What can we Learn from Individual-Cell Based Models?
    Journal of Statistical Physics, Vol. 128, No. 1-2. (July 2007), pp. 287-345.
    by Drasdo, Dirk, Hoehme, Stefan, Block, Michael
    posted to multicellular by fishtank on 2008-09-04 21:02:21 as **
  • Evaluation of predicted network modules in yeast metabolism using NMR-based metabolite profiling.
    Genome Res, Vol. 17, No. 4. (April 2007), pp. 510-519.
    by JG Bundy, B Papp, R Harmston, RA Browne, EM Clayson, N Burton, RJ Reece, SG Oliver, KM Brindle
    posted to fba by fishtank on 2008-09-04 20:10:28 as ** along with 2 people and 1 group alexg raiyar steinmetzlab
  • Chemometrics in metabonomics.
    J Proteome Res, Vol. 6, No. 2. (February 2007), pp. 469-479.
    by J Trygg, E Holmes, T Lundstedt
    posted to statistics by fishtank on 2008-09-03 20:59:14 as ** along with 1 person jyuh
  • Interactive exploration of microarray gene expression patterns in a reduced dimensional space.
    Genome research, Vol. 12, No. 7. (July 2002), pp. 1112-1120.
    by J Misra, W Schmitt, D Hwang, LL Hsiao, S Gullans, G Stephanopoulos, G Stephanopoulos
    posted to statistics microarray by fishtank on 2008-09-03 19:32:05 as **
  • Optimised score plot by principal components of predictions
    Chemometrics and Intelligent Laboratory Systems, Vol. 68, No. 1-2. (28 October 2003), pp. 61-74.
    by Øyvind Langsrud, Tormod Næs
    posted to statistics modeling by fishtank on 2008-09-03 19:23:40 as **
  • The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli
    Nature Biotechnology, Vol. 26, No. 6. (06 June 2008), pp. 659-667.
    by Adam M Feist, Bernhard
    posted to fba by fishtank on 2008-09-03 18:54:18 as ** along with 3 people and 2 groups ptrobajo michaelbarton AlexanderPico BergmanLab TNT
  • Development and validation of a spectral library searching method for peptide identification from MS/MS.
    Proteomics, Vol. 7, No. 5. (March 2007), pp. 655-667.
    by H Lam, EW Deutsch, JS Eddes, JK Eng, N King, SE Stein, R Aebersold
    posted to proteomics by fishtank on 2008-05-28 20:54:36 as ** along with 3 people jyuh nedwards olberd
  • If I only had a brain: exploring mouse brain images in the Allen Brain Atlas.
    Biology of the cell / under the auspices of the European Cell Biology Organization, Vol. 99, No. 7. (July 2007), pp. 403-409.
    by H Hochheiser, J Yanowitz
    posted to image_registration by fishtank on 2008-04-08 22:19:19 as **
  • Bayesian methods for proteomics
    PROTEOMICS, Vol. 9999, No. 9999. (2007), NA.
    by Gil Alterovitz, Jonathan Liu, Ehsan Afkhami, Marco F Ramoni
    posted to proteomics by fishtank on 2008-03-29 00:38:38 as ** along with 1 person jyuh
  • Implementation of Microarrays for Methylobacterium extorquens AM1
    OMICS: A Journal of Integrative Biology, Vol. 11, No. 4. (2007), pp. 325-340.
    by Yoko Okubo, Elizabeth Skovran, Xiaofeng Guo, Dhileep Sivam, Mary E Lidstrom
    posted to am1 by fishtank on 2008-03-25 23:00:39 as **
  • Is proteomics the new genomics?
    Cell, Vol. 130, No. 3. (10 August 2007), pp. 395-398.
    by J Cox, M Mann
    posted to proteomics by fishtank on 2008-02-23 01:27:58 as ** along with 4 people and 1 group grahamc oelemento Pao-Yang anwazo ParkinsonLab_at_MaRS
  • Simplified modelling of metabolic pathways for flux prediction and optimization: lessons from an in vitro reconstruction of the upper part of glycolysis.
    Biochem J, Vol. 396, No. 2. (1 June 2006), pp. 317-326.
    by JB Fiévet, C Dillmann, G Curien, D de Vienne
    posted to enzyme_optimization by fishtank on 2008-02-04 19:45:13 as **
  • Bringing metabolic networks to life: integration of kinetic, metabolic, and proteomic data
    Theoretical Biology and Medical Modelling, Vol. 3 (15 December 2006), 42.
    by Wolfram Liebermeister, Edda Klipp
    posted to enzyme_optimization by fishtank on 2008-02-04 19:33:22 as ** along with 5 people and 1 group lflorez jyuh wnpx raiyar jrbanga steinmetzlab
  • Optimization of kinetic parameters of enzymes
    Biochemistry and Molecular Biology Education, Vol. 30, No. 3. (2002), pp. 184-188.
    by Reinhart Heinrich, Enrique Meléndez-Hevia, Héctor Cabezas
    posted to enzyme_optimization by fishtank on 2008-02-04 19:15:45 as **
  • Stoichiometric model for evaluating the metabolic capabilities of the facultative methylotroph <I>Methylobacterium extorquens</I> AM1, with application to reconstruction of C<SUB><FONT SIZE='-1'>3</FONT></SUB> and C<SUB><FONT SIZE='-1'>4</FONT></SUB> metabolism
    Biotechnology and Bioengineering, Vol. 78, No. 3. (2002), pp. 296-312.
    by Stephen J Van Dien, Mary E Lidstrom
    posted to am1 by fishtank on 2008-01-14 20:09:46 as **
  • The tungsten-containing formate dehydrogenase from Methylobacterium extorquens AM1: Purification and properties
    European Journal of Biochemistry, Vol. 270, No. 2. (2003), pp. 325-333.
    by Markus Laukel, Ludmila Chistoserdova, Mary E Lidstrom, Julia A Vorholt
    posted to am1_enzymes by fishtank on 2007-12-17 23:35:15 as **
  • Multiple Formate Dehydrogenase Enzymes in the Facultative Methylotroph Methylobacterium extorquens AM1 Are Dispensable for Growth on Methanol
    J. Bacteriol., Vol. 186, No. 1. (1 January 2004), pp. 22-28.
    by Ludmila Chistoserdova, Markus Laukel, Jean-Charles Portais, Julia A Vorholt, Mary E Lidstrom
    posted to am1_enzymes by fishtank on 2007-12-17 23:34:29 as **
  • A methenyl tetrahydromethanopterin cyclohydrolase and a methenyl tetrahydrofolate cyclohydrolase in Methylobacterium extorquens AM1
    European Journal of Biochemistry, Vol. 261, No. 2. (1999), pp. 475-480.
    by Barbara K Pomper, Julia A Vorholt, Ludmila Chistoserdova, Mary E Lidstrom, Rudolf K Thauer
    posted to am1_enzymes by fishtank on 2007-12-17 23:32:29 as **
  • The NADP-Dependent Methylene Tetrahydromethanopterin Dehydrogenase in Methylobacterium extorquens AM1
    J. Bacteriol., Vol. 180, No. 20. (15 October 1998), pp. 5351-5356.
    by Julia A Vorholt, Ludmila Chistoserdova, Mary E Lidstrom, Rudolf K Thauer
    posted to am1_enzymes by fishtank on 2007-12-17 23:26:00 as **
  • Characterization of a second methylene tetrahydromethanopterin dehydrogenase from Methylobacterium extorquens AM1
    European Journal of Biochemistry, Vol. 267, No. 12. (2000), pp. 3762-3769.
    by Christoph H Hagemeier, Ludmila Chistoserdova, Mary E Lidstrom, Rudolf K Thauer, Julia A Vorholt
    posted to am1_enzymes by fishtank on 2007-12-17 23:19:43 as **
  • Information Theory, Inference & Learning Algorithms
    (15 June 2002)
    by David JC Mackay
    posted to book statistics by fishtank on 2007-12-13 22:03:08 as ** along with 44 people and 5 groups alexzeh thefillm pprett ppeeling A_Olympia ansobol yaroslavvb JoSeK ingo jrw rpadams gyuli dariusb simonjudge leidner bayesian BarrosH wnpx filippone marcosmuller danielaugot zielaj daveh spirit_of_numenor sbarthelme anon_pl dwf petrijooste wowbagger nrubens chrisc rsantana rwilliamson poluxmoon robertoalamino brianmc lop matjes delip quianominorleo markusd ekatsyrk luispedro robotact Philosophy_of_Information Blog_and_Wiki_Research AssistiveTechnology inference-group ComplexAdaptiveSystems
  • Explaining the Gibbs Sampler
    The American Statistician, Vol. 46, No. 3. (1992), pp. 167-174.
    by George Casella, Edward I George
    posted to statistics by fishtank on 2007-12-13 20:33:56 as ** along with 9 people bayes thijswesterveld navil seitentaisei adamsi abbie_riner pcarbo vlachmore bhaddow
  • Synthetic ecology: A model system for cooperation
    PNAS, Vol. 104, No. 6. (6 February 2007), pp. 1741-1742.
    by Maitreya J Dunham
    posted to cooperation by fishtank on 2007-11-08 01:45:15 as ** along with 1 person johncumbers
  • BACTERIAL PHYSIOLOGY: A function for redundancy
    Nature Reviews Microbiology, Vol. 3, No. 3. (01 March 2005), pp. 193-193.
    by Susan Jones
    posted to am1 by fishtank on 2007-11-01 18:05:32 as **
  • Mass fluctuation kinetics: capturing stochastic effects in systems of chemical reactions through coupled mean-variance computations.
    J Chem Phys, Vol. 126, No. 2. (14 January 2007)
    by CA Gómez-Uribe, GC Verghese
    posted to stochastic by fishtank on 2007-10-19 18:31:06 as **
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