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eweaver library [308 articles]

最近 eweaver さんのライブラリ (優先度順).
  • Understanding the computational methodologies of systems biology
    Brief Bioinform, Vol. 7, No. 4. (1 December 2006), pp. 315-317.
    by Werner Dubitzky
    posted to no-tag by eweaver on 2007-03-26 22:11:55 as *****
  • BIRCH: A user-oriented, locally-customizable, bioinformatics system
    BMC Bioinformatics, Vol. 8 (09 February 2007), 54.
    by Brian Fristensky
    posted to no-tag by eweaver on 2007-03-15 16:16:39 as ***** along with 2 people druvus jyuh
  • Open source tools and toolkits for bioinformatics: significance, and where are we?
    Brief Bioinform, Vol. 7, No. 3. (September 2006), pp. 287-296.
    by JE Stajich, H Lapp
  • notes The outcomes of pathway database computations depend on pathway ontology
    Nucl. Acids Res., Vol. 34, No. 13. (7 August 2006), pp. 3687-3697.
    by ML Green, PD Karp
    posted to no-tag by eweaver on 2007-02-27 10:44:28 as ***** along with 1 person and 1 group kuhn Bioinformatics
  • notes Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms.
    Bioinformatics, Vol. 19, No. 2. (22 January 2003), pp. 270-277.
    by H Ma, AP Zeng
    posted to no-tag by eweaver on 2007-02-27 10:27:12 as ***** along with 3 people kuhn tny yoh
  • BioWarehouse: a bioinformatics database warehouse toolkit
    BMC Bioinformatics, Vol. 7, No. 1. (2006)
    by Thomas Lee, Yannick Pouliot, Valerie Wagner, Priyanka Gupta, David S Calvert, Jessica Tenenbaum, Peter Karp
    posted to no-tag by eweaver on 2007-02-26 10:21:38 as ***** along with 2 people mircea Simplicity
  • notes The Pathway Tools software.
    Bioinformatics, Vol. 18 Suppl 1 (2002)
    by PD Karp, S Paley, P Romero
    posted to no-tag by eweaver on 2007-02-16 01:11:13 as ***** along with 2 people shung JeremyZucker
  • IdentiCS--identification of coding sequence and in silico reconstruction of the metabolic network directly from unannotated low-coverage bacterial genome sequence.
    BMC Bioinformatics, Vol. 5 (16 August 2004)
    by J Sun, AP Zeng
    posted to no-tag by eweaver on 2007-02-15 18:51:13 as ***** along with 1 person operon
  • metaSHARK: software for automated metabolic network prediction from DNA sequence and its application to the genomes of Plasmodium falciparum and Eimeria tenella
    Nucleic Acids Research, Vol. 33, No. 4., pp. 1399-1409.
  • Accelerating the reconstruction of genome-scale metabolic networks
    BMC Bioinformatics, Vol. 7 (13 June 2006), 296.
    by Richard A Notebaart, Frank HJ van Enckevort, Christof Francke, Roland J Siezen, Bas Teusink
  • Modeling biological systems: a unified approach
    SIGSOFT Softw. Eng. Notes, Vol. 30, No. 5. (September 2005), pp. 1-4.
    by Manuj Darbari, Vipin Saxena
    posted to software by eweaver on 2006-05-12 02:18:00 as ***** along with 3 people neilernst wnpx mmt
  • Improved prediction of signal peptides: SignalP 3.0.
    by Jannick D Bendtsen, Henrik Nielsen, Gunnar von Heijne, Søren Brunak
    posted to metagenomics by eweaver on 2005-12-07 07:09:33 as *****
  • Fundamental issues in systems biology.
    Bioessays, Vol. 27, No. 12. (December 2005), pp. 1270-1276.
    by Maureen A A O'malley, John Dupré
    posted to systems_biology by eweaver on 2005-11-28 19:00:36 as ***** along with 5 people LeightonP monod wnpx biosv maralena
  • Computational systems biology.
    Nature, Vol. 420, No. 6912. (14 November 2002), pp. 206-210.
    by H Kitano
  • Genome Alignment, Evolution of Prokaryotic Genome Organization, and Prediction of Gene Function Using Genomic Context
    Genome (2001)
    by YI Wolf, IB Rogozin, AS Kondrashov, EV Koonin
    posted to proteomics by eweaver on 2005-11-11 22:06:59 as *****
  • Analysis of the Thermotoga maritima genome combining a variety of sequence similarity and genome context tools
    Nucleic Acids Research (2000)
    posted to applied_analysis by eweaver on 2005-11-11 22:02:58 as *****
  • A reductionist's systems biology: opinion.
    Curr Opin Cell Biol, Vol. 17, No. 1. (February 2005), pp. 9-11.
    by PK Sorger
  • Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences.
    Bioinformatics, Vol. 22, No. 13. (1 July 2006), pp. 1658-1659.
    by W Li, A Godzik
  • notes Enzyme-specific profiles for genome annotation: PRIAM.
    Nucleic Acids Res, Vol. 31, No. 22. (15 November 2003), pp. 6633-6639.
  • Protein classification using ontology classification
    posted to no-tag by eweaver on 2007-02-15 17:55:35 as ****
  • Towards multidimensional genome annotation
    Nature Reviews Genetics, Vol. 7, No. 2., pp. 130-141.
    by Jennifer L Reed, Iman Famili, Ines Thiele, Bernhard O Palsson
  • From genomics to chemical genomics: new developments in KEGG.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
  • Development And Assessment Of Machine Learning Attributes For Ortholog Detection
    (June 2006)
    by Ying Lin
    posted to applied_analysis by eweaver on 2007-02-09 05:12:32 as ****
  • Functional cartography of complex metabolic networks
    Nature, Vol. 433, No. 7028. (24 February 2005), pp. 895-900.
    by Roger Guimera, LAN Luis
  • Metabolic pathways in the post-genome era
    Trends in Biochemical Sciences, Vol. 28, No. 5. (May 2003), pp. 250-258.
    by Jason A Papin, Nathan D Price, Sharon J Wiback, David A Fell, Bernhard O Palsson
    posted to pathway_general by eweaver on 2006-04-27 15:31:33 as **** along with 1 person tny
  • Ten Simple Rules for Getting Grants.
    PLoS Comput Biol, Vol. 2, No. 2. (24 February 2006)
    by Philip E E Bourne, Leo M M Chalupa
  • SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data
    Nucl. Acids Res., Vol. 31, No. 1. (1 January 2003), pp. 219-223.
    by Maximilian Diehn, Gavin Sherlock, Gail Binkley, Heng Jin, John C Matese, Tina Hernandez-Boussard, Christian A Rees, Michael J Cherry, David Botstein, Patrick O Brown, Ash A Alizadeh
    posted to db software by eweaver on 2006-02-22 04:13:05 as **** along with 2 people aalibes jfr
  • The relationship between protein structure and function: a comprehensive survey with application to the yeast genome
    Journal of Molecular Biology, Vol. 288, No. 1. (23 April 1999), pp. 147-164.
    by Hedi Hegyi, Mark Gerstein
  • Generalization Methods in Bioinformatics
    by Steven Eschrich, Nitesh V Chawla, Lawrence O Hall
    posted to bioalgorithms by eweaver on 2005-12-03 05:59:20 as ****
  • Designing for usability: key principles and what designers think
    Commun. ACM, Vol. 28, No. 3. (March 1985), pp. 300-311.
    by John D Gould, Clayton Lewis
    posted to interface_design by eweaver on 2005-12-03 05:36:46 as **** along with 3 people anar LexUT mvolger
  • DBI Genomics Center Genomics Document (?)
    posted to dbi by eweaver on 2005-12-03 02:39:58 as ****
  • How Will Big Pictures Emerge From a Sea of Biological Data?
    Science, Vol. 309, No. 5731. (01 July 2005), 94.
    by Elizabeth Pennisi
  • The European Bioinformatics Institute's data resources: towards systems biology
    Nucleic Acids Research, Vol. 33, No. Supplement 1. (1 January 2005), D46.
    by Catherine Brooksbank, Graham Cameron, Janet Thornton
    posted to systems_biology by eweaver on 2005-11-27 10:38:40 as **** along with 1 person gregdeocampo
  • Domain combinations in archaeal, eubacterial and eukaryotic proteomes.
    J Mol Biol, Vol. 310, No. 2. (6 July 2001), pp. 311-325.
    by G Apic, J Gough, SA Teichmann
    posted to proteomics by eweaver on 2005-11-27 10:32:12 as **** along with 4 people Schmidtc tny cjeans gulkur
  • A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases
    BMC Bioinformatics (2004)
    by M Green, P Karp
    posted to enzymes machine_learning pathway_prediction by eweaver on 2005-11-11 21:01:10 as ****
  • Indexing dataspaces
    (2007), pp. 43-54.
    by Xin Dong, Alon Halevy
  • DarkHorse: a method for genome-wide prediction of horizontal gene transfer
    Genome Biology, Vol. 8 (02 February 2007), R16.
    by Sheila Podell, Terry Gaasterland
    posted to bacteria prediction transfer by eweaver on 2007-07-27 03:40:09 as *** along with 2 people operon karfunkel
  • Integrating biological databases
    Nat Rev Genet, Vol. 4, No. 5. (May 2003), pp. 337-345.
    by Lincoln D Stein
  • Integration of biological sources: current systems and challenges ahead
    SIGMOD Rec., Vol. 33, No. 3. (September 2004), pp. 51-60.
    by Thomas Hernandez, Subbarao Kambhampati
    posted to db by eweaver on 2006-05-12 02:18:51 as *** along with 3 people neilernst lei angelika12
  • Database management for life sciences research
    SIGMOD Rec., Vol. 33, No. 2. (June 2004), pp. 15-20.
    by HV Jagadish, Frank Olken
  • The BioMOBY Project Explores Open-Source, Simple, Extensible Protocols for Enabling Biological Database Interoperability
    (2003)
    by Wilkinson Md, D Gessler, A Farmer, L Stein
    posted to db software by eweaver on 2005-12-09 03:39:19 as ***
  • Combining Multiple Models with Meta Decision Trees
    by Ljupco Todorovski, Saso Dzeroski
    posted to machine_learning by eweaver on 2005-12-08 05:42:39 as ***
  • Pattern recognition techniques for the emerging field of bioinformatics: A review
    Pattern Recognition, Vol. 38, No. 11. (November 2005), pp. 2055-2073.
    by Alan W Liew, Hong Yan, Mengsu Yang
    posted to blast db by eweaver on 2005-12-01 05:35:13 as *** along with 4 people xtizon Found Bailey yangxian
  • Understanding nature's catalytic toolkit.
    Trends Biochem Sci (5 October 2005)
    by Alex Gutteridge, Janet M M Thornton
  • A data integration methodology for systems biology: Experimental verification.
    Proc Natl Acad Sci U S A. 2005 Nov 21; [Epub ahead of print]
    posted to systems_biology by eweaver on 2005-11-28 19:05:52 as *** along with 1 person Schmidtc
  • A data integration methodology for systems biology.
    Proc Natl Acad Sci U S A (21 November 2005)
    by Daehee Hwang, Alistair G G Rust, Stephen Ramsey, Jennifer J J Smith, Deena M M Leslie, Andrea D D Weston, Pedro de Atauri, John D D Aitchison, Leroy Hood, Andrew F F Siegel, Hamid Bolouri
  • Discovering regulatory and signalling circuits in molecular interaction networks
    by T Ideker, O Ozier, B Schwikowski, Siegel Af
    posted to pathway_prediction by eweaver on 2005-11-27 10:45:16 as ***
  • Automatic annotation of protein function
    Current Opinion in Structural Biology, Vol. 15, No. 3. (June 2005), pp. 267-274.
    by Alfonso Valencia
  • A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae).
    Proc Natl Acad Sci U S A, Vol. 100, No. 14. (8 July 2003), pp. 8348-8353.
  • Predicting enzyme family class in a hybridization space.
    Protein Sci, Vol. 13, No. 11. (November 2004), pp. 2857-2863.
    by KC Chou, YD Cai
    posted to enzymes by eweaver on 2005-11-11 20:24:00 as *** along with 1 person baaden
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