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evaf library [213 articles]

最近 evaf ordered by to_read.
  • Molecular classification of head and neck squamous cell carcinomas using patterns of gene expression.
    Cancer cell, Vol. 5, No. 5. (May 2004), pp. 489-500.
    by CH Chung, JS Parker, G Karaca, J Wu, WK Funkhouser, D Moore, D Butterfoss, D Xiang, A Zanation, X Yin, WW Shockley, MC Weissler, LG Dressler, CG Shores, WG Yarbrough, CM Perou
    posted to no-tag by evaf on 2008-06-11 11:32:04 as **
  • Molecular portraits of human breast tumours.
    Nature, Vol. 406, No. 6797. (17 August 2000), pp. 747-752.
    by CM Perou, T Sørlie, MB Eisen, M van de Rijn, SS Jeffrey, CA Rees, JR Pollack, DT Ross, H Johnsen, LA Akslen, O Fluge, A Pergamenschikov, C Williams, SX Zhu, PE Lønning, AL Børresen-Dale, PO Brown, D Botstein
    posted to no-tag by evaf on 2008-06-11 11:31:05 as ** along with 4 people misonneh ruszczyk jfr frohike
  • Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications
    PNAS, Vol. 98, No. 19. (11 September 2001), pp. 10869-10874.
    by Therese Sorlie, Charles M Perou, Robert Tibshirani, Turid Aas, Stephanie Geisler, Hilde Johnsen, Trevor Hastie, Michael B Eisen, Matt van de Rijn, Stefanie S Jeffrey, Thor Thorsen, Hanne Quist, John C Matese, Patrick O Brown, David Botstein, Per E Lonning, Anne-Lise Borresen-Dale
    posted to no-tag by evaf on 2008-06-11 11:30:15 as ** along with 3 people jfr frohike macavity1g
  • Diversity of gene expression in adenocarcinoma of the lung.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 24. (20 November 2001), pp. 13784-13789.
    by ME Garber, OG Troyanskaya, K Schluens, S Petersen, Z Thaesler, M Pacyna-Gengelbach, M van de Rijn, GD Rosen, CM Perou, RI Whyte, RB Altman, PO Brown, D Botstein, I Petersen
    posted to no-tag by evaf on 2008-06-11 11:28:29 as **
  • Predicting hepatitis B virus-positive metastatic hepatocellular carcinomas using gene expression profiling and supervised machine learning.
    Nature medicine, Vol. 9, No. 4. (April 2003), pp. 416-423.
    by QH Ye, LX Qin, M Forgues, P He, JW Kim, AC Peng, R Simon, Y Li, AI Robles, Y Chen, ZC Ma, ZQ Wu, SL Ye, YK Liu, ZY Tang, XW Wang
    posted to microarray by evaf on 2008-06-11 10:05:24 as **
  • RNA secondary structures and their prediction
    Bulletin of Mathemetical Biology, Vol. 46 (1984), pp. 591-621.
    by Michael Zuker, David Sankoff
    posted to no-tag by evaf on 2006-01-16 14:38:35 as ** along with 2 people arcticrasta matriz
  • Identity elements of tRNA(Thr) towards Saccharomyces cerevisiae threonyl-tRNA synthetase
    Nucleic Acids Res., Vol. 23, No. 15. (11 August 1995), pp. 2831-2836.
    by N Nameki
    posted to trna-trnalogo by evaf on 2005-05-02 15:53:07 as **
  • Overlapping nucleotide determinants for specific aminoacylation of RNA microhelices
    Science, Vol. 255, No. 5048. (28 February 1992), pp. 1121-1125.
    by C Francklyn, JP Shi, P Schimmel
    posted to trna-trnalogo by evaf on 2005-05-02 15:51:04 as **
  • Evidence that a major determinant for the identity of a transfer RNA is conserved in evolution
    Biochemistry, Vol. 28, No. 17. (22 August 1989), pp. 6800-6804.
    by YM Hou, P Schimmel
    posted to trna-trnalogo by evaf on 2005-05-02 15:50:34 as **
  • A simple structural feature is a major determinant of the identity of a transfer RNA
    Nature, Vol. 333, No. 6169. (12 May 1988), pp. 140-145.
    by YM Hou, P Schimmel
    posted to trna-trnalogo by evaf on 2005-05-02 15:48:37 as ** along with 1 person LamBras
  • Structure in tRNA data
    Biochimie, Vol. 64, No. 6. (June 1982), pp. 387-397.
    by H Grosjean, RJ Cedergren, W Mckay
    posted to trna-trnalogo by evaf on 2005-05-02 15:47:04 as **
  • Identity elements of tRNA(Trp). Identification and evolutionary conservation
    J. Biol. Chem., Vol. 268, No. 13. (5 May 1993), pp. 9316-9322.
    by H Xue, W Shen, R Giege, JT Wong
    posted to trna-trnalogo by evaf on 2005-05-02 15:43:36 as **
  • Algorithms and Thermodynamics for RNA Secondary Structure Prediction: A Practical Guide.
    (1999)
    by DM&DT Zuker
    edited by JB&B Barciszewski
    posted to rna secondary_structure by evaf on 2005-05-02 08:55:07 as ** along with 1 person guxiyou
  • Modelling 'evo-devo' with RNA.
    Bioessays, Vol. 24, No. 12. (December 2002), pp. 1164-1177.
    by W Fontana
    posted to rna by evaf on 2005-04-06 15:31:53 as ** along with 3 people rklancer alexisgallagher eckart_bindewald
  • RNA folding and unfolding.
    Curr Opin Struct Biol, Vol. 14, No. 3. (June 2004), pp. 374-379.
    by B Onoa, I Tinoco
    posted to rna rna_folding by evaf on 2005-04-06 15:29:06 as ** along with 6 people and 3 groups marcius arcticrasta condon Hosna emidio_capriotti apop beta BioinfoCIPF SGU-CIPF
  • Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information.
    Nucleic Acids Res, Vol. 9, No. 1. (10 January 1981), pp. 133-148.
    by M Zuker, P Stiegler
    posted to rna secondary_structure by evaf on 2005-03-10 21:23:49 as ** along with 5 people and 2 groups marcius arcticrasta mtagaya Hosna guxiyou BioinfoCIPF SGU-CIPF
  • Prediction of RNA secondary structure by energy minimization.
    Methods Mol Biol, Vol. 25 (1994), pp. 267-294.
    by M Zuker
    posted to rna secondary_structure by evaf on 2005-03-10 21:23:45 as ** along with 1 person arcticrasta
  • The European ribosomal RNA database.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by J Wuyts, G Perrière, Y Van De Peer
    posted to database rna rrna by evaf on 2005-03-10 21:23:41 as **
  • No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution.
    Nucleic Acids Res, Vol. 27, No. 24. (15 December 1999), pp. 4816-4822.
    by C Workman, A Krogh
    posted to dinucleotide energy mrna rna shuffle by evaf on 2005-03-10 21:23:32 as **
  • The genome sequence of Schizosaccharomyces pombe.
    Nature, Vol. 415, No. 6874. (21 February 2002), pp. 871-880.
    by V Wood, R Gwilliam, MA Rajandream, M Lyne, R Lyne, A Stewart, J Sgouros, N Peat, J Hayles, S Baker, D Basham, S Bowman, K Brooks, D Brown, S Brown, T Chillingworth, C Churcher, M Collins, R Connor, A Cronin, P Davis, T Feltwell, A Fraser, S Gentles, A Goble, N Hamlin, D Harris, J Hidalgo, G Hodgson, S Holroyd, T Hornsby, S Howarth, EJ Huckle, S Hunt, K Jagels, K James, L Jones, M Jones, S Leather, S McDonald, J McLean, P Mooney, S Moule, K Mungall, L Murphy, D Niblett, C Odell, K Oliver, S O'Neil, D Pearson, MA Quail, E Rabbinowitsch, K Rutherford, S Rutter, D Saunders, K Seeger, S Sharp, J Skelton, M Simmonds, R Squares, S Squares, K Stevens, K Taylor, RG Taylor, A Tivey, S Walsh, T Warren, S Whitehead, J Woodward, G Volckaert, R Aert, J Robben, B Grymonprez, I Weltjens, E Vanstreels, M Rieger, M Schäfer, S Müller-Auer, C Gabel, M Fuchs, A Düsterhöft, C Fritzc, E Holzer, D Moestl, H Hilbert, K Borzym, I Langer, A Beck, H Lehrach, R Reinhardt, TM Pohl, P Eger, W Zimmermann, H Wedler, R Wambutt, B Purnelle, A Goffeau, E Cadieu, S Dréano, S Gloux, V Lelaure, S Mottier, F Galibert, SJ Aves, Z Xiang, C Hunt, K Moore, SM Hurst, M Lucas, M Rochet, C Gaillardin, VA Tallada, A Garzon, G Thode, RR Daga, L Cruzado, J Jimenez, M Sánchez, F del Rey, J Benito, A Domínguez, JL Revuelta, S Moreno, J Armstrong, SL Forsburg, L Cerutti, T Lowe, WR McCombie, I Paulsen, J Potashkin, GV Shpakovski, D Ussery, BG Barrell, P Nurse, L Cerrutti
    posted to genome rna yeast by evaf on 2005-03-10 21:23:28 as ** along with 1 person Cortel
  • Conserved RNA secondary structures in Picornaviridae genomes.
    Nucleic Acids Res, Vol. 29, No. 24. (15 December 2001), pp. 5079-5089.
    by C Witwer, S Rauscher, IL Hofacker, PF Stadler
    posted to rna secondary_structure virus by evaf on 2005-03-10 21:23:20 as ** along with 1 person ilh
  • Melanocortin receptors: ligands and proteochemometrics modeling.
    Ann N Y Acad Sci, Vol. 994 (June 2003), pp. 21-26.
    by JE Wikberg, F Mutulis, I Mutule, S Veiksina, M Lapinsh, R Petrovska, P Prusis
    posted to chemometrics proteochemometrics by evaf on 2005-03-10 21:23:15 as **
  • Fast and reliable prediction of noncoding RNAs.
    Proc Natl Acad Sci U S A, Vol. 102, No. 7. (15 February 2005), pp. 2454-2459.
    by S Washietl, IL Hofacker, PF Stadler
    posted to non-coding rna by evaf on 2005-03-10 21:23:10 as ** along with 9 people and 3 groups gangli dayjm marcius eckart_bindewald tardigrade dquest Eonwe ilh raylim tulip BioinfoCIPF SGU-CIPF
  • Evaluating the predictability of conformational switching in RNA.
    Bioinformatics, Vol. 20, No. 10. (10 July 2004), pp. 1573-1582.
    by B Voss, C Meyer, R Giegerich
    posted to riboswitch rna by evaf on 2005-03-10 21:23:06 as **
  • Regulation of the vitamin B12 metabolism and transport in bacteria by a conserved RNA structural element.
    RNA, Vol. 9, No. 9. (September 2003), pp. 1084-1097.
    by AG Vitreschak, DA Rodionov, AA Mironov, MS Gelfand
    posted to regulatory_element rna by evaf on 2005-03-10 21:23:02 as **
  • Identification of 13 novel human modification guide RNAs.
    Nucleic Acids Res, Vol. 31, No. 22. (15 November 2003), pp. 6543-6551.
    by P Vitali, H Royo, H Seitz, JP Bachellerie, A Hüttenhofer, J Cavaillé
    posted to rna snorna by evaf on 2005-03-10 21:22:58 as ** along with 1 person mtagaya
  • The G x U wobble base pair. A fundamental building block of RNA structure crucial to RNA function in diverse biological systems.
    EMBO Rep, Vol. 1, No. 1. (July 2000), pp. 18-23.
    by G Varani, WH McClain
    posted to rna wobble by evaf on 2005-03-10 21:22:54 as ** along with 1 person eskay
  • Discovering regulatory elements in non-coding sequences by analysis of spaced dyads.
    Nucleic Acids Res, Vol. 28, No. 8. (15 April 2000), pp. 1808-1818.
    by J van Helden, AF Rios, J Collado-Vides
    posted to non-coding regulatory_element rna by evaf on 2005-03-10 21:22:50 as **
  • Improved parameters for prediction of RNA structure.
    Cold Spring Harb Symp Quant Biol, Vol. 52 (1987), pp. 123-133.
    by DH Turner, N Sugimoto, JA Jaeger, CE Longfellow, SM Freier, R Kierzek
    posted to rna secondary_structure by evaf on 2005-03-10 21:22:46 as **
  • RNA structure prediction.
    Annu Rev Biophys Biophys Chem, Vol. 17 (1988), pp. 167-192.
    by DH Turner, N Sugimoto
    posted to rna secondary_structure by evaf on 2005-03-10 21:22:41 as **
  • The complete genome sequence of the gastric pathogen Helicobacter pylori.
    Nature, Vol. 388, No. 6642. (7 August 1997), pp. 539-547.
    by JF Tomb, O White, AR Kerlavage, RA Clayton, GG Sutton, RD Fleischmann, KA Ketchum, HP Klenk, S Gill, BA Dougherty, K Nelson, J Quackenbush, L Zhou, EF Kirkness, S Peterson, B Loftus, D Richardson, R Dodson, HG Khalak, A Glodek, K McKenney, LM Fitzegerald, N Lee, MD Adams, JC Venter
    posted to genome by evaf on 2005-03-10 21:22:37 as ** along with 2 people bjorns xingxu
  • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
    Nucleic Acids Res, Vol. 22, No. 22. (11 November 1994), pp. 4673-4680.
    by JD Thompson, DG Higgins, TJ Gibson
    posted to alignment by evaf on 2005-03-10 21:22:33 as ** along with 24 people and 1 group usagi-kirin jmw greger_halltorp jshapiro mercaptan caldavis miguel onlyrey bjorns aprasad RMGraze moborg arcticrasta dullhunk caporaso ahanora Haggan BioNica leelarcombe timflutre adijr xingxu newton1234 Lombardo_7 biomedical-nlp
  • A GC-rich sequence within the 5' untranslated region of human basonuclin mRNA inhibits its translation.
    Gene, Vol. 237, No. 1. (3 September 1999), pp. 35-44.
    by W Tang, H Tseng
    posted to regulatory_element rna utr by evaf on 2005-03-10 21:22:29 as **
  • Mouse-centric comparative transcriptomics of protein coding and non-coding RNAs.
    Bioessays, Vol. 26, No. 8. (August 2004), pp. 833-843.
    by M Suzuki, Y Hayashizaki
    posted to coding non-coding rna by evaf on 2005-03-10 21:22:25 as **
  • Compilation of tRNA sequences and sequences of tRNA genes.
    Nucleic Acids Res, Vol. 26, No. 1. (1 January 1998), pp. 148-153.
    by M Sprinzl, C Horn, M Brown, A Ioudovitch, S Steinberg
    posted to rna trna by evaf on 2005-03-10 21:22:20 as ** along with 2 people and 1 group condon Hosna beta
  • Génolevures: comparative genomics and molecular evolution of hemiascomycetous yeasts.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by D Sherman, P Durrens, E Beyne, M Nikolski, JL Souciet,
    posted to database yeast by evaf on 2005-03-10 21:22:17 as **
  • Comparing multiple RNA secondary structures using tree comparisons.
    Comput Appl Biosci, Vol. 6, No. 4. (October 1990), pp. 309-318.
    by BA Shapiro, KZ Zhang
    posted to rna secondary_structure by evaf on 2005-03-10 21:22:12 as **
  • An algorithm for comparing multiple RNA secondary structures.
    Comput Appl Biosci, Vol. 4, No. 3. (August 1988), pp. 387-393.
    by BA Shapiro
    posted to rna secondary_structure by evaf on 2005-03-10 21:22:05 as **
  • Major identity determinants in the "augmented D helix" of tRNA(Glu) from Escherichia coli.
    J Mol Biol, Vol. 256, No. 4. (8 March 1996), pp. 685-700.
    by S Sekine, O Nureki, K Sakamoto, T Niimi, M Tateno, M Go, T Kohno, A Brisson, J Lapointe, S Yokoyama
    posted to rna trna by evaf on 2005-03-10 21:22:00 as **
  • mRNAs have greater negative folding free energies than shuffled or codon choice randomized sequences.
    Nucleic Acids Res, Vol. 27, No. 7. (1 April 1999), pp. 1578-1584.
    by W Seffens, D Digby
    posted to energy mrna rna shuffle by evaf on 2005-03-10 21:21:56 as **
  • From sequences to shapes and back: a case study in RNA secondary structures.
    Proc R Soc Lond B Biol Sci, Vol. 255, No. 1344. (22 March 1994), pp. 279-284.
    by P Schuster, W Fontana, PF Stadler, IL Hofacker
    posted to rna secondary_structure by evaf on 2005-03-10 21:21:52 as ** along with 3 people and 2 groups marcius ilh mtw BioinfoCIPF SGU-CIPF
  • Estimating the contributions of selection and self-organization in RNA secondary structure.
    J Mol Evol, Vol. 49, No. 1. (July 1999), pp. 76-83.
    by EA Schultes, PT Hraber, TH LaBean
    posted to rna secondary_structure by evaf on 2005-03-10 21:21:48 as **
  • Information content of binding sites on nucleotide sequences.
    J Mol Biol, Vol. 188, No. 3. (5 April 1986), pp. 415-431.
    by TD Schneider, GD Stormo, L Gold, A Ehrenfeucht
    posted to information_content by evaf on 2005-03-10 21:21:44 as ** along with 1 person zambujo
  • Novel CNBP- and La-based translation control systems for mammalian cells.
    Biotechnol Bioeng, Vol. 81, No. 1. (5 January 2003), pp. 1-12.
    by S Schlatter, M Fussenegger
    posted to regulatory_element by evaf on 2005-03-10 21:21:40 as ** along with 1 person jonathanjacobs
  • Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome.
    Nucleic Acids Res, Vol. 32, No. 14. (2004), pp. 4281-4296.
    by P Schattner, WA Decatur, CA Davis, M Ares, MJ Fournier, TM Lowe
    posted to rna snorna yeast by evaf on 2005-03-10 21:21:37 as ** along with 2 people arcticrasta mtagaya
  • RASMOL: biomolecular graphics for all.
    Trends Biochem Sci, Vol. 20, No. 9. (September 1995)
    by RA Sayle, EJ Milner-White
    posted to no-tag by evaf on 2005-03-10 21:21:33 as **
  • New chemical descriptors relevant for the design of biologically active peptides. A multivariate characterization of 87 amino acids.
    J Med Chem, Vol. 41, No. 14. (2 July 1998), pp. 2481-2491.
    by M Sandberg, L Eriksson, J Jonsson, M Sjöström, S Wold
    posted to chemometrics by evaf on 2005-03-10 21:21:29 as ** along with 1 person mloewer
  • How does a protein fold?
    Nature, Vol. 369, No. 6477. (19 May 1994), pp. 248-251.
    by A Sali, E Shakhnovich, M Karplus
    posted to fold protein by evaf on 2005-03-10 21:21:25 as ** along with 2 people and 2 groups ucbcjbm barry structural_bioinformatics Bioinformatics
  • Kinetics of protein folding. A lattice model study of the requirements for folding to the native state.
    J Mol Biol, Vol. 235, No. 5. (4 February 1994), pp. 1614-1636.
    by A Sali, E Shakhnovich, M Karplus
    posted to kinetics protein by evaf on 2005-03-10 21:21:20 as ** along with 1 person saunders
  • An iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots.
    Bioinformatics, Vol. 20, No. 1. (1 January 2004), pp. 58-66.
    by J Ruan, GD Stormo, W Zhang
    posted to pseudoknot rna by evaf on 2005-03-10 21:21:16 as ** along with 3 people and 1 group arcticrasta condon Hosna beta
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