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elfar bibtex-import [428 articles]

最近 elfar さんのライブラリに追加された論文の中から タグ bibtex-import. You can also see everyone's bibtex-import.
  • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice.
    Vol. 22 (1994), pp. 4673-4680.
    by JD Thompson, DG Higgins, TJ Gibson
    posted to bibtex-import by elfar on 2008-04-10 09:52:20 as **
  • Alignment of RNA base pairing probability matrices
    Bioinformatics, Vol. 20 (2004), pp. 2222-2227.
    by IL Hofacker, SH Bernhart, PF Stadler
    posted to bibtex-import by elfar on 2008-04-10 08:56:43 as **
  • Abstracts
    Brief Bioinform, Vol. 7, No. 4. (2006), pp. 407-412.
    by King I Jordan
    posted to bibtex-import by elfar on 2008-04-09 15:47:47 as **
  • Structured RNAs in the ENCODE selected regions of the human genome
    Genome Research, Vol. 17 (2007), pp. 852-864.
    by S Washietl, JS Pedersen, JO Korbel, C Stocsits, AR Gruber, J Hackermüller, J Hertel, M Lindemeyer, K Reiche, A Tanzer, C Ucla, C Wyss, SE Antonarakis, F Denoeud, J Lagarde, J Drenkow, P Kapranov, TR Gingeras, R Guigo, M Snyder, MB Gerstein, A Reymond, IL Hofacker, PF Stadler
    posted to bibtex-import by elfar on 2008-04-09 15:46:16 as **
  • Multiple structural alignment and clustering of RNA sequences
    Bioinformatics, Vol. 23 (2007), pp. 926-932.
    by E Torarinsson, JH Havgaard, J Gorodkin
    posted to bibtex-import by elfar on 2008-04-09 15:44:35 as **
  • Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure
    Genome Research., Vol. 16 (2006), pp. 885-889.
    by E Torarinsson, M Sawera, Havgaard, M Fredholm, J Gorodkin
    posted to bibtex-import by elfar on 2008-04-09 15:43:03 as **
  • Comparative genomics beyond sequence-based alignments: RNA structures in the ENCODE regions
    Genome Res., Vol. 18, No. 2. (2008), pp. 242-251.
    by E Torarinsson, Z Yao, ED Wiklund, JB Bramsen, C Hansen, J Kjems, N Tommerup, WL Ruzzo, J Gorodkin
    posted to bibtex-import by elfar on 2008-04-09 15:38:05 as **
  • Advanced Lectures on Machine Learning, ML Summer Schools 2003, Canberra, Australia, February 2-14, 2003, Tübingen, Germany, August 4-16, 2003, Revised Lectures
    Vol. 3176 (2004)
    edited by Olivier Bousquet, Ulrike von Luxburg, Gunnar Rätsch
    posted to bibtex-import by elfar on 2008-04-09 15:33:44 as **
  • The uRNA database.
    Nucleic Acids Res., Vol. 24, No. 1. (1996), pp. 76-9.
    by C Zwieb
    posted to bibtex-import by elfar on 2008-04-09 15:33:44 as **
  • Mfold web server for nucleic acid folding and hybridization prediction.
    Nucleic Acids Res., Vol. 31, No. 13. (2003), pp. 3406-15.
    by M Zuker
    posted to bibtex-import by elfar on 2008-04-09 15:33:44 as **
  • Algorithms and Thermodynamics for RNA Secondary Structure Prediction: A Practical Guide
    (1999), pp. 11-43.
    by M Zuker, dh Mathews, dh Turner
    posted to bibtex-import by elfar on 2008-04-09 15:33:44 as **
  • On finding all suboptimal foldings of an RNA molecule
    Science, Vol. 244, No. 4900. (1989), pp. 48-52.
    by Michael Zuker
    posted to bibtex-import by elfar on 2008-04-09 15:33:44 as **
  • Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
    Nucleic Acids Research, Vol. 9, No. 1. (1981), pp. 133-148.
    by Michael Zuker, Patrick Stiegler
    posted to bibtex-import by elfar on 2008-04-09 15:33:44 as **
  • NATsDB: Natural Antisense Transcripts DataBase.
    Nucleic Acids Res. (2006)
    by Y Zhang, J Li, L Kong, G Gao, QR Liu, L Wei
    posted to bibtex-import by elfar on 2008-04-09 15:33:44 as **
  • A sequence-based filtering method for ncRNA identification and its application to searching for riboswitch elements.
    Bioinformatics., Vol. 22, No. 14. (2006), pp. e557-65.
    by S Zhang, I Borovok, Y Aharonowitz, R Sharan, V Bafna
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • Alignment of BLAST high-scoring segment pairs based on the longest increasing subsequence algorithm.
    Bioinformatics., Vol. 19, No. 11. (2003), pp. 1391-6.
    by H Zhang
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • Human RNase 7: a new cationic ribonuclease of the RNase A superfamily.
    Nucleic Acids Res, Vol. 31, No. 2. (2003), pp. 602-7.
    by J Zhang, KD Dyer, HF Rosenberg
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • Simple fast algorithms for the editing distance between trees and related problems
    SIAM Journal of Computing, Vol. 18, No. 6. (1989), pp. 1245-1262.
    by K Zhang, D Shasha
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • The EBI SRS server-recent developments.
    Bioinformatics, Vol. 18, No. 2. (2002), pp. 368-73.
    by EM Zdobnov, R Lopez, R Apweiler, T Etzold
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • RNomics in Drosophila melanogaster: identification of 66 candidates for novel non-messenger RNAs.
    Nucleic Acids Res, Vol. 31, No. 10. (2003), pp. 2495-507.
    by G Yuan, C Klambt, JP Bachellerie, J Brosius, A Huttenhofer
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • An epigenetic activation role of Piwi and a Piwi-associated piRNA in Drosophila melanogaster.
    Nature, Vol. 450, No. 7167. (November 2007), pp. 304-308.
    by H Yin, H Lin
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • Multiple flexible structure alignment using partial order graphs
    Bioinformatics, Vol. 21, No. 10. (2005), pp. 2362-2369.
    by Yuzhen Ye, Adam Godzik
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • CMfinder - a covariance model based RNA motif finding algorithm
    Bioinformatics, Vol. 22, No. 4. (2006), pp. 445-452.
    by Zizhen Yao, Zasha Weinberg, Walter L Ruzzo
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • Prediction of non-coding and antisense RNA genes in Escherichia coli with Gapped Markov Model.
    Gene., Vol. 372 (2006), pp. 171-81.
    by N Yachie, K Numata, R Saito, A Kanai, M Tomita
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • RNA Sampler: A new sampling based algorithm for common RNA secondary structure prediction and structural alignment
    Bioinformatics, Vol. 23, No. 15. (2007), pp. 1883-1891.
    by X Xu, Y Ji, GD Stormo
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs.
    Biochemistry., Vol. 37, No. 42. (1998), pp. 14719-35.
    by T Xia, Jr J Santalucia, ME Burkard, R Kierzek, SJ Schroeder, X Jiao, C Cox, DH Turner
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • The European Large Subunit Ribosomal RNA Database.
    Nucleic Acids Res., Vol. 29, No. 1. (2001), pp. 175-7.
    by J Wuyts, P De Rijk, Y Van de Peer, T Winkelmans, R De Wachter
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • Complete suboptimal folding of RNA and the stability of secondary structures
    Biopolymers, Vol. 49, No. 2. (1999), pp. 145-165.
    by Stefan Wuchty, Walter Fontana, Ivo L Hofacker, Peter Schuster
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • ANN-Spec: a method for discovering transcription factor binding sites with improved specificity.
    Pac Symp Biocomput (2000), pp. 467-78.
    by CT Workman, GD Stormo
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution
    Nucleic Acids Research, Vol. 27, No. 24. (1999), pp. 4816-4822.
    by Christopher Workman, Anders Krogh
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • Structure and assembly of group I introns.
    Curr Opin Struct Biol., Vol. 15, No. 3. (2005), pp. 324-30.
    by SA Woodson
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • Prediction of consensus RNA secondary structures including pseudoknots
    IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB), Vol. 1, No. 2. (2004), pp. 66-77.
    by Christina Witwer, Ivo L Hofacker, Peter F Stadler
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • Riboswitches and the role of noncoding RNAs in bacterial metabolic control.
    Curr Opin Chem Biol., Vol. 9, No. 6. (2005), pp. 594-602.
    by WC Winkler
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • Control of gene expression by a natural metabolite-responsive ribozyme.
    Nature., Vol. 428, No. 6980. (2004), pp. 281-6.
    by WC Winkler, A Nahvi, A Roth, JA Collins, RR Breaker
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • An mRNA structure that controls gene expression by binding S-adenosylmethionine.
    Nat Struct Biol., Vol. 10, No. 9. (2003), pp. 701-7.
    by WC Winkler, A Nahvi, N Sudarsan, JE Barrick, RR Breaker
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression.
    Nature., Vol. 419, No. 6910. (2002), pp. 952-6.
    by W Winkler, A Nahvi, RR Breaker
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • An mRNA structure that controls gene expression by binding FMN.
    Proc Natl Acad Sci U S A., Vol. 99, No. 25. (2002), pp. 15908-13.
    by WC Winkler, Cohen S Chalamish, RR Breaker
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • Experimental RNomics in Aquifex aeolicus: identification of small non-coding RNAs and the putative 6S RNA homolog.
    Nucleic Acids Res., Vol. 33, No. 6. (2005), pp. 1949-60.
    by DK Willkomm, J Minnerup, A Huttenhofer, RK Hartmann
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • A strategy for probing the function of noncoding RNAs finds a repressor of NFAT.
    Science., Vol. 309, No. 5740. (2005), pp. 1570-3.
    by AT Willingham, AP Orth, S Batalov, EC Peters, BG Wen, Aza P Blanc, JB Hogenesch, PG Schultz
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • The tmRNA Website.
    Nucleic Acids Res, Vol. 26, No. 1. (1998), pp. 163-5.
    by KP Williams, DP Bartel
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering.
    PLoS Comput. Biol., Vol. 3, No. 4. (2007)
    by S Will, K Reiche, IL Hofacker, PF Stadler, R Backofen
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • Sequence-based heuristics for faster annotation of non-coding RNA families.
    Bioinformatics., Vol. 22, No. 1. (2006), pp. 35-9.
    by Z Weinberg, WL Ruzzo
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • Faster genome annotation of non-coding RNA families without loss of accuray
    (2004), pp. 243-251.
    by Z Weinberg, WL Ruzzo
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • Exploiting conserved structure for faster annotation of non-coding RNAs without loss of accuracy
    Bioinformatics., Vol. 20 Suppl 1 (2004), pp. I334-I341.
    by Z Weinberg, WL Ruzzo
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • RNAML: a standard syntax for exchanging RNA information.
    RNA., Vol. 8, No. 6. (2002), pp. 707-17.
    by A Waugh, P Gendron, R Altman, JW Brown, D Case, D Gautheret, SC Harvey, N Leontis, J Westbrook, E Westhof, M Zuker, F Major
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • Sequence Comparison Significance and Poisson Approximation
    Statistical Science, Vol. 9, No. 3. (August 1994), pp. 367-381.
    by MS Waterman, M Vingron
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • Secondary structure of single stranded nucleic acids
    Math. Biosci., Vol. 42 (1978), pp. 257-266.
    by MS Waterman, TF Smith
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • Secondary structure of single stranded nucleic acids
    Adv. Math. Suppl. Stud., Vol. 1 (1978), pp. 167-212.
    by MS Waterman
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • Small RNAs in Escherichia coli.
    Trends Microbiol, Vol. 7, No. 1. (1999), pp. 37-45.
    by KM Wassarman, A Zhang, G Storz
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
  • Identification of novel small RNAs using comparative genomics and microarrays.
    Genes Dev, Vol. 15, No. 13. (2001), pp. 1637-51.
    by KM Wassarman, F Repoila, C Rosenow, G Storz, S Gottesman
    posted to bibtex-import by elfar on 2008-04-09 15:33:43 as **
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