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elfar library [478 articles]

最近 elfar さんのライブラリ .
  • Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs).
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 12. (25 March 2008), pp. 4951-4956.
    by C Lu, DH Jeong, K Kulkarni, M Pillay, K Nobuta, R German, SR Thatcher, C Maher, L Zhang, D Ware, B Liu, X Cao, BC Meyers, PJ Green
    posted to mirna antisense by elfar on 2008-05-08 15:18:04 as **
  • Sorting out small RNAs.
    Cell, Vol. 133, No. 1. (4 April 2008), pp. 25-26.
    by VN Kim
    posted to mirna by elfar on 2008-05-08 15:15:59 as **
  • The Vienna RNA Websuite.
    Nucleic acids research (19 April 2008)
    by Andreas R R Gruber, Ronny Lorenz, Stephan H H Bernhart, Richard Neuböck, Ivo L L Hofacker
    posted to webserver vienna by elfar on 2008-05-08 15:14:59 as **
  • RNAplex: a fast tool for RNA-RNA interaction search.
    Bioinformatics (Oxford, England) (23 April 2008)
    by Hakim Tafer, Ivo L L Hofacker
    posted to rna-rna interaction by elfar on 2008-05-08 15:08:57 as **
  • Human Alu RNA Is a Modular Transacting Repressor of mRNA Transcription during Heat Shock.
    Mol Cell, Vol. 29, No. 4. (29 February 2008), pp. 499-509.
    by PD Mariner, RD Walters, CA Espinoza, LF Drullinger, SD Wagner, JF Kugel, JA Goodrich
    posted to rna alu by elfar on 2008-05-08 15:07:22 as ** along with 1 person stoffreg
  • The regulatory activity of microRNA(*) species has substantial influence on microRNA and 3' UTR evolution.
    Nature structural & molecular biology (30 March 2008)
    by Katsutomo Okamura, Michael D D Phillips, David M M Tyler, Hong Duan, Yu-Ting T Chou, Eric C C Lai
    posted to mirna by elfar on 2008-05-08 15:01:45 as ** along with 3 people cabbagezs maralena mdphillips
  • Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework
    BMC Bioinformatics, Vol. 9 (25 April 2008), 212.
    by Kazutaka Katoh, Hiroyuki Toh
    posted to multiple alignment by elfar on 2008-05-08 14:57:37 as **
  • ConStruct: improved construction of RNA consensus structures
    BMC Bioinformatics, Vol. 9 (28 April 2008), 219.
    by Andreas Wilm, Kornelia Linnenbrink, Gerhard Steger
    posted to multiple alignment by elfar on 2008-05-08 14:43:52 as **
  • R: A Language for Data Analysis and Graphics
    Journal of Computational and Graphical Statistics, Vol. 5, No. 3. (1996), pp. 299-314.
    by Ross Ihaka, Robert Gentleman
    posted to file-import-08-04-28 by elfar on 2008-04-28 11:13:11 as **
  • Three models for the description of language.
    IRE Transactions on Information Theory, Vol. 2 (1956), pp. 113-124.
    by N Chomsky
    posted to file-import-08-04-28 by elfar on 2008-04-28 10:14:26 as **
  • Some molecular details of the secondary structure of ribonucleic acid.
    Nature, Vol. 188 (8 October 1960), pp. 98-101.
    by JR FRESCO, BM ALBERTS, P DOTY
    posted to no-tag by elfar on 2008-04-28 10:04:14 as **
  • Genome scale search of noncoding RNAs Bacteria to Vertebrates
    (2008)
    by Zizhen Yao
    posted to no-tag by elfar on 2008-04-24 12:40:11 as **
  • Dual coding of siRNAs and miRNAs by plant transposable elements
    RNA (26 March 2008), rna.916708.
    by Jittima Piriyapongsa, King I Jordan
    posted to palindrome microrna by elfar on 2008-04-23 17:48:25 as **
  • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets.
    Cell, Vol. 120, No. 1. (14 January 2005), pp. 15-20.
    by BP Lewis, CB Burge, DP Bartel
    posted to microrna by elfar on 2008-04-23 14:06:12 as ** along with 9 people and 3 groups marcius maryee eckart_bindewald tardigrade mortenlindow andersbj mtagaya heliopais Alexander_Kanitz microRNA BioinfoCIPF SGU-CIPF
  • MicroRNA: a new player in stem cells.
    Journal of cellular physiology, Vol. 209, No. 2. (November 2006), pp. 266-269.
    by B Zhang, X Pan, TA Anderson
    posted to microrna by elfar on 2008-04-23 14:04:39 as **
  • MicroRNAs, mRNAs, and Translation.
    Cold Spring Harb Symp Quant Biol, Vol. 71 (2006), pp. 531-535.
    by PA Maroney, Y Yu, TW Nilsen
    posted to microrna by elfar on 2008-04-23 14:03:03 as ** along with 1 person tardigrade
  • microRNAs: small molecules with big roles - C. elegans to human cancer.
    Biology of the cell / under the auspices of the European Cell Biology Organization, Vol. 100, No. 2. (February 2008), pp. 71-81.
    by M Kato, FJ Slack
    posted to microrna by elfar on 2008-04-23 14:01:48 as **
  • Short RNAs can identify new candidate transposable element families in Arabidopsis.
    Plant Physiol, Vol. 130, No. 1. (September 2002), pp. 6-9.
    by MF Mette, J van der Winden, M Matzke, AJ Matzke
    posted to palindrome by elfar on 2008-04-23 13:20:17 as ** along with 2 people mtagaya dandaman
  • A Family of Human MicroRNA Genes from Miniature Inverted-Repeat Transposable Elements
    PLoS ONE, Vol. 2, No. 2. (2007)
    by Jittima Piriyapongsa, King I Jordan
    posted to file-import-08-04-23 by elfar on 2008-04-23 11:20:36 as **
  • Initial sequencing and comparative analysis of the mouse genome.
    Nature, Vol. 420, No. 6915. (5 December 2002), pp. 520-562.
    by RH Waterston, K Lindblad-Toh, E Birney, J Rogers, JF Abril, P Agarwal, R Agarwala, R Ainscough, M Alexandersson, P An, SE Antonarakis, J Attwood, R Baertsch, J Bailey, K Barlow, S Beck, E Berry, B Birren, T Bloom, P Bork, M Botcherby, N Bray, MR Brent, DG Brown, SD Brown, C Bult, J Burton, J Butler, RD Campbell, P Carninci, S Cawley, F Chiaromonte, AT Chinwalla, DM Church, M Clamp, C Clee, FS Collins, LL Cook, RR Copley, A Coulson, O Couronne, J Cuff, V Curwen, T Cutts, M Daly, R David, J Davies, KD Delehaunty, J Deri, ET Dermitzakis, C Dewey, NJ Dickens, M Diekhans, S Dodge, I Dubchak, DM Dunn, SR Eddy, L Elnitski, RD Emes, P Eswara, E Eyras, A Felsenfeld, GA Fewell, P Flicek, K Foley, WN Frankel, LA Fulton, RS Fulton, TS Furey, D Gage, RA Gibbs, G Glusman, S Gnerre, N Goldman, L Goodstadt, D Grafham, TA Graves, ED Green, S Gregory, R Guigó, M Guyer, RC Hardison, D Haussler, Y Hayashizaki, LW Hillier, A Hinrichs, W Hlavina, T Holzer, F Hsu, A Hua, T Hubbard, A Hunt, I Jackson, DB Jaffe, LS Johnson, M Jones, TA Jones, A Joy, M Kamal, EK Karlsson, D Karolchik, A Kasprzyk, J Kawai, E Keibler, C Kells, WJ Kent, A Kirby, DL Kolbe, I Korf, RS Kucherlapati, EJ Kulbokas, D Kulp, T Landers, JP Leger, S Leonard, I Letunic, R Levine, J Li, M Li, C Lloyd, S Lucas, B Ma, DR Maglott, ER Mardis, L Matthews, E Mauceli, JH Mayer, M McCarthy, WR McCombie, S McLaren, K McLay, JD McPherson, J Meldrim, B Meredith, JP Mesirov, W Miller, TL Miner, E Mongin, KT Montgomery, M Morgan, R Mott, JC Mullikin, DM Muzny, WE Nash, JO Nelson, MN Nhan, R Nicol, Z Ning, C Nusbaum, MJ O'Connor, Y Okazaki, K Oliver, E Overton-Larty, L Pachter, G Parra, KH Pepin, J Peterson, P Pevzner, R Plumb, CS Pohl, A Poliakov, TC Ponce, CP Ponting, S Potter, M Quail, A Reymond, BA Roe, KM Roskin, EM Rubin, AG Rust, R Santos, V Sapojnikov, B Schultz, J Schultz, MS Schwartz, S Schwartz, C Scott, S Seaman, S Searle, T Sharpe, A Sheridan, R Shownkeen, S Sims, JB Singer, G Slater, A Smit, DR Smith, B Spencer, A Stabenau, N Stange-Thomann, C Sugnet, M Suyama, G Tesler, J Thompson, D Torrents, E Trevaskis, J Tromp, C Ucla, A Ureta-Vidal, JP Vinson, AC Von Niederhausern, CM Wade, M Wall, RJ Weber, RB Weiss, MC Wendl, AP West, K Wetterstrand, R Wheeler, S Whelan, J Wierzbowski, D Willey, S Williams, RK Wilson, E Winter, KC Worley, D Wyman, S Yang, SP Yang, EM Zdobnov, MC Zody, ES Lander,
    posted to no-tag by elfar on 2008-04-16 19:56:17 as ** along with 16 people and 2 groups dkulp sdinka Cortel jwortman Dax42 aprasad ccots indigoviolet adepace treangen joshuashen djkt stajich olympos hausen yoanjacquemin EisenLab Berkeley Mycology
  • Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs
    Genome Res., Vol. 17, No. 5. (1 May 2007), pp. 556-565.
    by Jasmina Ponjavic, Chris P Ponting, Gerton Lunter
    posted to long ncrna selection by elfar on 2008-04-16 19:54:38 as ** along with 5 people and 4 groups aprasad alexg dchughes djkt Stew Bioinformatics EisenLab G4ID Genetics-of-Gambling
  • Probabilistic whole-genome alignments reveal high indel rates in the human and mouse genomes.
    Bioinformatics, Vol. 23, No. 13. (1 July 2007)
    by G Lunter
    posted to no-tag by elfar on 2008-04-16 19:51:25 as ** along with 3 people and 1 group aprasad AaronDarling mailund Bioinformatics
  • Secondary structure prediction for aligned RNA sequences.
    J Mol Biol, Vol. 319, No. 5. (2002), pp. 1059-66.
    by Ivo L Hofacker, Martin Fekete, Peter F Stadler
    posted to file-import-08-04-16 by elfar on 2008-04-16 13:35:17 as **
  • The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data
    Nature, Vol. 452, No. 7183., pp. 51-55.
    by Marc Parisien, François Major
    posted to no-tag by elfar on 2008-04-14 17:47:08 as ** along with 2 people austin zwang
  • Fast Pairwise Structural RNA Alignments by Pruning of the Dynamical Programming Matrix.
    PLoS Comput Biol, Vol. 3, No. 10. (12 October 2007)
    by Jakob H H Havgaard, Elfar Torarinsson, Jan Gorodkin
    posted to no-tag by elfar on 2008-04-14 15:16:11 as ** along with 2 people mtagaya fabsta
  • RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription
    Science (17 May 2007), 1138341.
    by Philipp Kapranov, Jill Cheng, Sujit Dike, David A Nix, Radharani Duttagupta, Aarron T Willingham, Peter F Stadler, Jana Hertel, Joerg Hackermueller, Ivo L Hofacker, Ian Bell, Evelyn Cheung, Jorg Drenkow, Erica Dumais, Sandeep Patel, Gregg Helt, Madhavan Ganesh, Srinka Ghosh, Antonio Piccolboni, Victor Sementchenko, Hari Tammana, Thomas R Gingeras
    posted to array tiling by elfar on 2008-04-14 13:06:06 as ** along with 11 people and 4 groups xingxu marcius alexg dpollard xico mtagaya rdiaz djkt stajich mathijsv asddd EisenLab WetBiology BioinfoCIPF SGU-CIPF
  • Global identification of human transcribed sequences with genome tiling arrays.
    Science, Vol. 306, No. 5705. (24 December 2004), pp. 2242-2246.
    by P Bertone, V Stolc, TE Royce, JS Rozowsky, AE Urban, X Zhu, JL Rinn, W Tongprasit, M Samanta, S Weissman, M Gerstein, M Snyder
    posted to array tiling by elfar on 2008-04-14 13:04:35 as ** along with 3 people and 2 groups miguel kaspermunch nickluscombe Bioinformatics EBI-regulation
  • Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans.
    Nature, Vol. 391, No. 6669. (19 February 1998), pp. 806-811.
    by A Fire, S Xu, MK Montgomery, SA Kostas, SE Driver, CC Mello
    posted to rnai by elfar on 2008-04-14 12:58:52 as ** along with 6 people and 1 group dayjm tardigrade mtagaya raylim shizhao benlin Wikipedia
  • WAR: Webserver for aligning structural RNAs
    Submitted, Vol. XX (2008), pp. XX-XX.
    by E Torarinsson, S Lindgreen
    posted to file-import-08-04-14 by elfar on 2008-04-14 12:51:52 as **
  • An extensive class of small RNAs in Caenorhabditis elegans.
    Science, Vol. 294, No. 5543. (26 October 2001), pp. 862-864.
    by RC Lee, V Ambros
    posted to mirna by elfar on 2008-04-14 12:50:34 as ** along with 2 people and 1 group tardigrade heliopais microRNA
  • An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans.
    Science, Vol. 294, No. 5543. (26 October 2001), pp. 858-862.
    by NC Lau, LP Lim, EG Weinstein, DP Bartel
    posted to mirna by elfar on 2008-04-14 12:49:44 as ** along with 3 people and 1 group tardigrade mtagaya heliopais microRNA
  • Identification of novel genes coding for small expressed RNAs.
    Science, Vol. 294, No. 5543. (26 October 2001), pp. 853-858.
    by M Lagos-Quintana, R Rauhut, W Lendeckel, T Tuschl
    posted to mirna by elfar on 2008-04-14 12:49:05 as ** along with 2 people and 1 group mtagaya heliopais microRNA
  • The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14.
    Cell, Vol. 75, No. 5. (3 December 1993), pp. 843-854.
    by RC Lee, RL Feinbaum, V Ambros
    posted to mirna by elfar on 2008-04-14 12:48:01 as ** along with 5 people ea tardigrade arcticrasta tvdbulck benlin
  • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice.
    Vol. 22 (1994), pp. 4673-4680.
    by JD Thompson, DG Higgins, TJ Gibson
    posted to bibtex-import by elfar on 2008-04-10 09:52:20 as **
  • Evolutionary trees from DNA sequences: a maximum likelihood approach.
    J Mol Evol, Vol. 17, No. 6. (1981), pp. 368-376.
    by J Felsenstein
    posted to no-tag by elfar on 2008-04-10 09:42:49 as ** along with 7 people and 1 group bpb chrn kaspermunch dquest djkt timflutre dmc Bioinformatics
  • Evolutionary rate at the molecular level.
    Nature, Vol. 217, No. 5129. (17 February 1968), pp. 624-626.
    by M Kimura
    posted to no-tag by elfar on 2008-04-10 09:41:20 as ** along with 1 person timflutre
  • RNA Multi-Structure Landscapes - A Study Based on Temperature Dependent Partition Functions
    EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, Vol. 22 (1993), pp. 13-24.
    by Sebastian Bonhoeffer, John S Mccaskill, Peter F Stadler, Peter Schuster
    posted to no-tag by elfar on 2008-04-10 09:08:01 as **
  • Alignment of RNA base pairing probability matrices
    Bioinformatics, Vol. 20 (2004), pp. 2222-2227.
    by IL Hofacker, SH Bernhart, PF Stadler
    posted to bibtex-import by elfar on 2008-04-10 08:56:43 as **
  • Abstracts
    Brief Bioinform, Vol. 7, No. 4. (2006), pp. 407-412.
    by King I Jordan
    posted to bibtex-import by elfar on 2008-04-09 15:47:47 as **
  • Structured RNAs in the ENCODE selected regions of the human genome
    Genome Research, Vol. 17 (2007), pp. 852-864.
    by S Washietl, JS Pedersen, JO Korbel, C Stocsits, AR Gruber, J Hackermüller, J Hertel, M Lindemeyer, K Reiche, A Tanzer, C Ucla, C Wyss, SE Antonarakis, F Denoeud, J Lagarde, J Drenkow, P Kapranov, TR Gingeras, R Guigo, M Snyder, MB Gerstein, A Reymond, IL Hofacker, PF Stadler
    posted to bibtex-import by elfar on 2008-04-09 15:46:16 as **
  • Multiple structural alignment and clustering of RNA sequences
    Bioinformatics, Vol. 23 (2007), pp. 926-932.
    by E Torarinsson, JH Havgaard, J Gorodkin
    posted to bibtex-import by elfar on 2008-04-09 15:44:35 as **
  • Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure
    Genome Research., Vol. 16 (2006), pp. 885-889.
    by E Torarinsson, M Sawera, Havgaard, M Fredholm, J Gorodkin
    posted to bibtex-import by elfar on 2008-04-09 15:43:03 as **
  • Comparative genomics beyond sequence-based alignments: RNA structures in the ENCODE regions
    Genome Res., Vol. 18, No. 2. (2008), pp. 242-251.
    by E Torarinsson, Z Yao, ED Wiklund, JB Bramsen, C Hansen, J Kjems, N Tommerup, WL Ruzzo, J Gorodkin
    posted to bibtex-import by elfar on 2008-04-09 15:38:05 as **
  • Advanced Lectures on Machine Learning, ML Summer Schools 2003, Canberra, Australia, February 2-14, 2003, Tübingen, Germany, August 4-16, 2003, Revised Lectures
    Vol. 3176 (2004)
    edited by Olivier Bousquet, Ulrike von Luxburg, Gunnar Rätsch
    posted to bibtex-import by elfar on 2008-04-09 15:33:44 as **
  • The uRNA database.
    Nucleic Acids Res., Vol. 24, No. 1. (1996), pp. 76-9.
    by C Zwieb
    posted to bibtex-import by elfar on 2008-04-09 15:33:44 as **
  • Mfold web server for nucleic acid folding and hybridization prediction.
    Nucleic Acids Res., Vol. 31, No. 13. (2003), pp. 3406-15.
    by M Zuker
    posted to bibtex-import by elfar on 2008-04-09 15:33:44 as **
  • Algorithms and Thermodynamics for RNA Secondary Structure Prediction: A Practical Guide
    (1999), pp. 11-43.
    by M Zuker, dh Mathews, dh Turner
    posted to bibtex-import by elfar on 2008-04-09 15:33:44 as **
  • On finding all suboptimal foldings of an RNA molecule
    Science, Vol. 244, No. 4900. (1989), pp. 48-52.
    by Michael Zuker
    posted to bibtex-import by elfar on 2008-04-09 15:33:44 as **
  • Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
    Nucleic Acids Research, Vol. 9, No. 1. (1981), pp. 133-148.
    by Michael Zuker, Patrick Stiegler
    posted to bibtex-import by elfar on 2008-04-09 15:33:44 as **
  • NATsDB: Natural Antisense Transcripts DataBase.
    Nucleic Acids Res. (2006)
    by Y Zhang, J Li, L Kong, G Gao, QR Liu, L Wei
    posted to bibtex-import by elfar on 2008-04-09 15:33:44 as **
    • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/user/elfar

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