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eckart_bindewald secondary [44 articles]

最近 eckart_bindewald さんのライブラリに追加された論文の中から タグ secondary. You can also see everyone's secondary.
  • Strategies for measuring evolutionary conservation of RNA secondary structures
    BMC Bioinformatics, Vol. 9 (26 February 2008), 122.
    by Andreas R Gruber, Stefan H Bernhart, Ivo L Hofacker, Stefan Washietl
    posted to conservation evolution rna secondary structure by eckart_bindewald on 2008-03-21 16:54:03 as *** along with 3 people and 1 group ilh stajich gresillaud Berkeley Mycology
  • Multiple structural alignment and clustering of RNA sequences.
    Bioinformatics (25 February 2007)
    by Elfar Torarinsson, Jakob H H Havgaard, Jan Gorodkin
    posted to alignment rna secondary secondary_structure structure by eckart_bindewald on 2007-03-01 11:27:50 as *** along with 7 people and 2 groups marcius eweaver ppgardne ilh zwang dunnp zhouyu BioinfoCIPF SGU-CIPF
  • Computational RNA secondary structure design: empirical complexity and improved methods
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Rosalia A Hernandez, Holger Hoos, Anne Condon
    posted to structure secondary rna design by eckart_bindewald on 2007-02-07 14:51:32 as **** along with 1 person and 1 group mgaldzic CHIP
  • Complete suboptimal folding of RNA and the stability of secondary structures.
    Biopolymers, Vol. 49, No. 2. (February 1999), pp. 145-165.
    by S Wuchty, W Fontana, IL Hofacker, P Schuster
    posted to structure stability secondary robustness rna canalization by eckart_bindewald on 2007-01-23 17:14:50 as read along with 3 people and 2 groups marcius arcticrasta ilh BioinfoCIPF SGU-CIPF
  • Modelling 'evo-devo' with RNA.
    Bioessays, Vol. 24, No. 12. (December 2002), pp. 1164-1177.
    by W Fontana
    posted to structure secondary robustness rna mutation genetic canalization by eckart_bindewald on 2007-01-23 16:57:41 as ***** along with 3 people rklancer evaf alexisgallagher
  • Viral RNA and evolved mutational robustness.
    J Exp Zool, Vol. 285, No. 2. (15 August 1999), pp. 119-127.
    by A Wagner, PF Stadler
    posted to structure secondary robustness rna mutation by eckart_bindewald on 2007-01-23 16:29:09 as ***** along with 1 person gokhan
  • The robustness of naturally and artificially selected nucleic acid secondary structures.
    J Mol Evol, Vol. 58, No. 6. (June 2004), pp. 681-691.
    by LA Meyers, JF Lee, M Cowperthwaite, AD Ellington
    posted to structure secondary robustness rna mutation by eckart_bindewald on 2007-01-23 16:27:10 as *****
  • Secondary structure computer prediction of the poliovirus 5' non-coding region is improved by a genetic algorithm.
    Comput Appl Biosci, Vol. 13, No. 1. (February 1997), pp. 1-12.
    by KM Currey, BA Shapiro
    posted to structure secondary robustness rna prediction persistence mutation genetic algorithm by eckart_bindewald on 2007-01-23 16:22:01 as read
  • Kinetic dissection of fundamental processes of eukaryotic translation initiation in vitro.
    EMBO J, Vol. 18, No. 23. (1 December 1999), pp. 6705-6717.
    by JR Lorsch, D Herschlag
    posted to rna secondary secondary_structure structure translation_initiation by eckart_bindewald on 2006-12-07 18:14:00 as read
  • Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.
    Genome Res, Vol. 15, No. 8. (August 2005), pp. 1034-1050.
    by A Siepel, G Bejerano, JS Pedersen, AS Hinrichs, M Hou, K Rosenbloom, H Clawson, J Spieth, LW Hillier, S Richards, GM Weinstock, RK Wilson, RA Gibbs, WJ Kent, W Miller, D Haussler
    posted to conserved noncoding prediction rna secondary structure by eckart_bindewald on 2006-09-22 19:20:36 as **** along with 14 people and 2 groups pradiptaray bpb aprasad balajis indigoviolet brant adepace djkt olympos sujaikumar Stew cisevol dmc elfar EisenLab cis-regulatory-evolution
  • A dynamic programming algorithm for RNA structure prediction including pseudoknots.
    J Mol Biol, Vol. 285, No. 5. (5 February 1999), pp. 2053-2068.
    by E Rivas, SR Eddy
    posted to prediction pseudoknot rna secondary structure by eckart_bindewald on 2006-08-29 13:24:13 as **** along with 9 people and 1 group evaf balajis arcticrasta dquest condon Hosna jarasch physics guxiyou beta
  • Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction.
    BMC Bioinformatics, Vol. 5 (5 August 2004)
    by KJ Doshi, JJ Cannone, CW Cobaugh, RR Gutell
    posted to mfold prediction rna secondary structure by eckart_bindewald on 2006-08-29 12:25:21 as *** along with 1 person arcticrasta
  • A periodic pattern of mRNA secondary structure created by the genetic code
    Nucl. Acids Res., Vol. 34, No. 8. (8 May 2006), pp. 2428-2437.
    by Svetlana A Shabalina, Aleksey Y Ogurtsov, Nikolay A Spiridonov
    posted to initiation secondary star3 structure translation utr by eckart_bindewald on 2006-07-17 12:00:13 as read along with 2 people and 1 group penka raylim Nie
  • mRNAs containing extensive secondary structure in their 5' non-coding region translate efficiently in cells overexpressing initiation factor eIF-4E.
    EMBO J, Vol. 11, No. 11. (November 1992), pp. 4153-4158.
    by AE Koromilas, A Lazaris-Karatzas, N Sonenberg
    posted to initiation rna secondary structure translation utr by eckart_bindewald on 2006-06-07 13:54:03 as read
  • Insertion mutagenesis to increase secondary structure within the 5' noncoding region of a eukaryotic mRNA reduces translational efficiency.
    Cell, Vol. 40, No. 3. (March 1985), pp. 515-526.
    by J Pelletier, N Sonenberg
    posted to initiation rna secondary structure translation utr by eckart_bindewald on 2006-06-07 13:37:51 as **
  • The involvement of mRNA secondary structure in protein synthesis.
    Biochem Cell Biol, Vol. 65, No. 6. (June 1987), pp. 576-581.
    by J Pelletier, N Sonenberg
    posted to initiation rna secondary structure translation by eckart_bindewald on 2006-06-07 13:34:28 as **
  • Conserved tertiary structure elements in the 5' untranslated region of human enteroviruses and rhinoviruses.
    Virology, Vol. 191, No. 2. (December 1992), pp. 858-866.
    by SY Le, JH Chen, N Sonenberg, JV Maizel
    posted to rna secondary structure translation utr by eckart_bindewald on 2006-06-07 13:21:17 as **
  • Comparison of P-RnaPredict and mfold - algorithms for RNA secondary structure prediction.
    Bioinformatics (10 February 2006)
    by Kay C C Wiese, Andrew Hendriks
    posted to ga prediction rna secondary structure by eckart_bindewald on 2006-02-14 16:01:24 as * along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • HotKnots: heuristic prediction of RNA secondary structures including pseudoknots.
    RNA, Vol. 11, No. 10. (October 2005), pp. 1494-1504.
    by J Ren, B Rastegari, A Condon, HH Hoos
    posted to pseudoknot rna secondary structure by eckart_bindewald on 2006-02-06 21:35:30 as ** along with 6 people and 3 groups marcius arcticrasta condon Hosna jarasch guxiyou beta BioinfoCIPF SGU-CIPF
  • Thermodynamics of RNA-RNA Binding.
    Bioinformatics (29 January 2006)
    by Ulrike Mückstein, Hakim Tafer, Jörg Hackermüller, Stephan H H Bernhart, Peter F F Stadler, Ivo L L Hofacker
    posted to prediction rna secondary structure by eckart_bindewald on 2006-02-06 12:27:25 as **** along with 6 people and 3 groups marcius andersbj arcticrasta ilh mtw physics microRNA BioinfoCIPF SGU-CIPF
  • Statistical Inference for Well-ordered Structures in Nucleotide Sequences.
    Proc IEEE Comput Soc Bioinform Conf, Vol. 2 (2003), pp. 190-196.
    by SY Le, JH Chen, JV Maize
    posted to microrna rna secondary structure by eckart_bindewald on 2006-02-06 12:21:43 as **
  • Inferring consensus structure from nucleic acid sequences.
    Comput Appl Biosci, Vol. 7, No. 3. (July 1991), pp. 347-352.
    by DK Chiu, T Kolodziejczak
    posted to information mutual prediction secondary structure trna by eckart_bindewald on 2006-01-23 21:32:38 as read
  • RNA secondary structure prediction based on free energy and phylogenetic analysis.
    J Mol Biol, Vol. 289, No. 4. (18 June 1999), pp. 935-947.
    by V Juan, C Wilson
    posted to prediction rna secondary structure by eckart_bindewald on 2006-01-04 14:05:50 as read along with 1 person arcticrasta
  • Secondary structure prediction for aligned RNA sequences.
    J Mol Biol, Vol. 319, No. 5. (21 June 2002), pp. 1059-1066.
    by IL Hofacker, M Fekete, PF Stadler
    posted to alignment prediction rna secondary structure by eckart_bindewald on 2006-01-04 14:02:23 as read along with 7 people evaf balajis ppgardne arcticrasta ilh xiaobeizhao raylim
  • Crystal Structure of the Ribosome at 5.5 A Resolution
    Science, Vol. 292, No. 5518. (04 May 2001), pp. 883-896.
    by Marat M Yusupov, Gulnara Z Yusupova, Albion Baucom, Kate Lieberman, Thomas N Earnest, JHD Cate, Harry F Noller
    posted to ribosome rna secondary structure by eckart_bindewald on 2006-01-04 13:13:41 as read along with 3 people and 3 groups anita marcius equipediaz structure-bii BioinfoCIPF SGU-CIPF
  • Secondary structure model for bacterial 16S ribosomal RNA: phylogenetic, enzymatic and chemical evidence.
    Nucleic Acids Res, Vol. 8, No. 10. (24 May 1980), pp. 2275-2293.
    by CR Woese, LJ Magrum, R Gupta, RB Siegel, DA Stahl, J Kop, N Crawford, J Brosius, R Gutell, JJ Hogan, HF Noller
    posted to compensatory rna secondary sequence structure by eckart_bindewald on 2006-01-04 12:49:33 as read along with 2 people and 1 group mcox condon beta
  • The microRNAs of Caenorhabditis elegans.
    Genes Dev, Vol. 17, No. 8. (15 April 2003), pp. 991-1008.
    by LP Lim, NC Lau, EG Weinstein, A Abdelhakim, S Yekta, MW Rhoades, CB Burge, DP Bartel
    posted to microrna prediction rna secondary structure by eckart_bindewald on 2005-12-19 20:37:51 as *** along with 3 people and 1 group tardigrade mtagaya akiezun Bioinformatics
  • Identification of Drosophila MicroRNA targets.
    PLoS Biol, Vol. 1, No. 3. (December 2003)
    by A Stark, J Brennecke, RB Russell, SM Cohen
    posted to microrna prediction rna secondary structure target by eckart_bindewald on 2005-12-19 20:28:08 as **** along with 2 people and 2 groups lp2 heliopais Bioinformatics microRNA
  • Fast and effective prediction of microRNA/target duplexes.
    RNA, Vol. 10, No. 10. (October 2004), pp. 1507-1517.
    by M Rehmsmeier, P Steffen, M Hochsmann, R Giegerich
    posted to microrna prediction rna secondary structure target by eckart_bindewald on 2005-12-19 20:24:49 as read along with 4 people and 1 group mortenlindow mtagaya Hosna maralena microRNA
  • A bayesian statistical algorithm for RNA secondary structure prediction.
    Comput Chem, Vol. 23, No. 3-4. (15 June 1999), pp. 387-400.
    by Y Ding, CE Lawrence
    posted to bayesian prediction rna secondary structure by eckart_bindewald on 2005-12-14 14:48:46 as ** along with 3 people and 3 groups marcius arcticrasta condon beta BioinfoCIPF SGU-CIPF
  • RNA secondary structure and compensatory evolution.
    Genes Genet Syst, Vol. 74, No. 6. (December 1999), pp. 271-286.
    by Y Chen, DB Carlini, JF Baines, J Parsch, JM Braverman, S Tanda, W Stephan
    posted to compensatory information mutual prediction rna secondary structure by eckart_bindewald on 2005-12-14 14:46:51 as **** along with 2 people mdimmic raylim
  • Thermodynamics of three-way multibranch loops in RNA.
    Biochemistry, Vol. 40, No. 23. (12 June 2001), pp. 6971-6981.
    by JM Diamond, DH Turner, DH Mathews
    posted to loop multibranch rna secondary structure thermodynamics by eckart_bindewald on 2005-12-14 14:44:45 as *****
  • Secondary structure prediction and structure-specific sequence analysis of single-stranded DNA.
    Nucleic Acids Res, Vol. 29, No. 15. (1 August 2001), pp. 3248-3257.
    by F Dong, HT Allawi, T Anderson, BP Neri, VI Lyamichev
    posted to prediction rna secondary structure by eckart_bindewald on 2005-12-14 14:41:58 as **
  • Vienna RNA secondary structure server.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3429-3431.
    by IL Hofacker
    posted to prediction rna secondary structure by eckart_bindewald on 2005-12-14 14:37:13 as *** along with 10 people reyez evaf dayjm balicea arcticrasta mtagaya dquest ilh onufriev maralena
  • RNAsoft: A suite of RNA secondary structure prediction and design software tools.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3416-3422.
    by M Andronescu, R Aguirre-Hernández, A Condon, HH Hoos
    posted to prediction rna secondary sequence by eckart_bindewald on 2005-12-14 14:36:49 as *** along with 6 people and 4 groups marcius stsaft Hosna cthachuk mgaldzic stajich BioinfoCIPF SGU-CIPF CHIP Berkeley Mycology
  • Pfold: RNA secondary structure prediction using stochastic context-free grammars.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3423-3428.
    by B Knudsen, J Hein
    posted to prediction rna scfg secondary structure by eckart_bindewald on 2005-12-14 14:36:27 as ** along with 4 people evaf arcticrasta dquest raylim
  • A new algorithm for RNA secondary structure design.
    J Mol Biol, Vol. 336, No. 3. (20 February 2004), pp. 607-624.
    by M Andronescu, AP Fejes, F Hutter, HH Hoos, A Condon
    posted to design rna secondary sequence structure by eckart_bindewald on 2005-12-14 14:33:32 as **** along with 5 people and 4 groups marcius gane5h cthachuk mgaldzic smallbadguy 18th-century_history_culture_and_society BioinfoCIPF SGU-CIPF CHIP
  • Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction.
    BMC Bioinformatics, Vol. 5 (4 June 2004)
    by RD Dowell, SR Eddy
    posted to prediction rna scfg secondary structure by eckart_bindewald on 2005-12-14 14:32:12 as ***
  • Sfold web server for statistical folding and rational design of nucleic acids.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by Y Ding, CY Chan, CE Lawrence
    posted to prediction rna secondary structure by eckart_bindewald on 2005-12-14 14:31:23 as *** along with 3 people jyuh mtagaya Hosna
  • Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics.
    BMC Bioinformatics, Vol. 5 (4 August 2004)
    by J Reeder, R Giegerich
    posted to prediction rna secondary structure by eckart_bindewald on 2005-12-14 14:30:48 as *** along with 4 people and 3 groups marcius arcticrasta condon Hosna beta BioinfoCIPF SGU-CIPF
  • A comparative method for finding and folding RNA secondary structures within protein-coding regions.
    Nucleic Acids Res, Vol. 32, No. 16. (2004), pp. 4925-4936.
    by JS Pedersen, IM Meyer, R Forsberg, P Simmonds, J Hein
    posted to coding prediction rna secondary structure by eckart_bindewald on 2005-12-14 14:28:51 as ** along with 1 person arcticrasta
  • Predicting a set of minimal free energy RNA secondary structures common to two sequences.
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2246-2253.
    by DH Mathews
    posted to prediction rna secondary structure by eckart_bindewald on 2005-12-14 14:24:01 as *** along with 3 people and 2 groups austin marcius arcticrasta BioinfoCIPF SGU-CIPF
  • Predicting RNA structure using mutual information.
    Appl Bioinformatics, Vol. 4, No. 1. (2005), pp. 53-59.
    by E Freyhult, V Moulton, P Gardner
    posted to prediction rna secondary structure by eckart_bindewald on 2005-12-14 14:22:53 as *** along with 4 people and 2 groups evaf marcius eweaver arcticrasta BioinfoCIPF SGU-CIPF
  • Cofolga: a genetic algorithm for finding the common folding of two RNAs.
    Comput Biol Chem, Vol. 29, No. 2. (April 2005), pp. 111-119.
    by A Taneda
    posted to prediction rna secondary structure by eckart_bindewald on 2005-12-14 14:22:24 as *** along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
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