ealloza library [274 articles]

最近 ealloza さんのライブラリ (優先度順).

Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data.

Nat Genet, Vol. 34, No. 2. (June 2003), pp. 166-176.

by E Segal, M Shapira, A Regev, D Pe'er, D Botstein, D Koller, N Friedman

posted to regulation network module expression by ealloza on 2008-10-03 11:51:07 as

along with 16 people orzenil tuck bayesian wnpx tabu koller olympos fishtank dimatura karfunkel roys pkm dragonrez tvdbulck chrisamiller aviad_work

miRBase: tools for microRNA genomics.

Nucleic Acids Res (8 November 2007)

by Sam Griffiths-Jones, Harpreet Kaur K Saini, Stijn van V Dongen, Anton J J Enright

posted to microrna database by ealloza on 2008-10-03 10:46:50 as

along with 4 people giovenko jyuh jfr cabbagezs

MicroRNA expression profiling of human breast cancer identifies new markers of tumour subtype

Genome Biology, Vol. 8 (08 October 2007), R214.

by Cherie Blenkiron, Leonard D Goldstein, Natalie P Thorne, Inmaculada Spiteri, Suet-Feung Chin, Mark J Dunning, Nuno L Barbosa-Morais, Andrew E Teschendorff, Andrew R Green, Ian O Ellis, Simon Tavare, Carlos Caldas, Eric A Miska

posted to breast cancer expression human microarray microrna by ealloza on 2008-05-12 12:31:58 as

along with 3 people and 1 group jfr heliopais giovenko microRNA

THE EVOLUTIONARY DYNAMICS OF EUKARYOTIC GENE ORDER

Nat Rev Genet, Vol. 5, No. 4. (April 2004), pp. 299-310.

by Laurence D Hurst, Csaba Pal, Martin J Lercher

posted to functional_annotation gene_order review by ealloza on 2007-06-13 11:56:04 as

along with 1 group BioinfoCIPF

The origin of breast cancer.

Menopause (18 May 2007)

by Barry G Wren

posted to aberration cancer chromosome human mutation by ealloza on 2007-06-04 10:36:34 as

along with 1 person and 1 group suizan BioinfoCIPF

Response to letter by the ISCN standing committee

Genes, Chromosomes and Cancer, Vol. 46, No. 5. (2007), 516.

by Felix Mitelman, Janet D Rowley

posted to cancer clonal editorial iscn karyotype by ealloza on 2007-05-14 17:13:16 as

along with 1 group BioinfoCIPF

ISCN (2005) is not acceptable for describing clonal evolution in cancer

Genes, Chromosomes and Cancer, Vol. 46, No. 3. (2007), pp. 213-214.

by Felix Mitelman, Janet D Rowley

posted to cancer clonal editorial iscn karyotype by ealloza on 2007-05-14 17:12:02 as

along with 1 group BioinfoCIPF

The epigenetic progenitor origin of human cancer

Nature Reviews Genetics, Vol. 7, No. 1., pp. 21-33.

by Andrew P Feinberg, Rolf Ohlsson, Steven Henikoff

posted to cancer epigenetics human review by ealloza on 2007-05-14 12:08:43 as

along with 8 people and 2 groups strands tuck sebastien_vigneau Garamonfok loopback007 waghsk tdmckee srp33 BioinfoCIPF Cancer_Stem_Cells

From genes to functional classes in the study of biological systems

BMC Bioinformatics, Vol. 8 (03 April 2007), 114.

by Fatima Al-Shahrour, Leonardo Arbiza, Hernan Dopazo, Jaime Huerta-Cepas, Pablo Minguez, David Montaner, Joaquin Dopazo

posted to evolution expression gene_set_analysis interaction microarray by ealloza on 2007-04-17 18:25:54 as

along with 6 people and 1 group jfr Sharpshoot ajw Garamonfok djkt sgoetz BioinfoCIPF

Extensions to gene set enrichment

Bioinformatics, Vol. 23, No. 3. (1 February 2007), pp. 306-313.

by Zhen Jiang, Robert Gentleman

posted to microarray gene_set_analysis expression algorithm by ealloza on 2007-02-05 10:58:15 as

along with 5 people and 1 group djkt waghsk heliopais giovenko magusina BioinfoCIPF

Genomic DNA Insertions and Deletions Occur Frequently Between Humans and Nonhuman Primates

Genome Res., Vol. 13, No. 3. (1 March 2003), pp. 341-346.

by Kelly A Frazer, Xiyin Chen, David A Hinds, Krishna PV Pant, Nila Patil, David R Cox

posted to human indel by ealloza on 2006-11-16 10:09:56 as

along with 1 group BioinfoCIPF

A framework for the informed normalization of printed microarrays

South African Journal of Science, Vol. 103, No. 9 & 10. (2007), pp. 381-390.

by Johan Van Heerden, Sally-Ann Walford, Arthur Shen, Nicola Illing

posted to expression microarray normalization review by ealloza on 2008-06-05 14:18:55 as

Transcription factor and microRNA motif discovery: The Amadeus platform and a compendium of metazoan target sets.

Genome research (14 April 2008)

by Chaim Linhart, Yonit Halperin, Ron Shamir

posted to database microrna target transcription_factor by ealloza on 2008-04-22 10:16:51 as

along with 7 people and 1 group jfr idonaldson maralena fpattyn isimpson tmmurali maximilianh BergmanLab

Integrative analysis reveals the direct and indirect interactions between DNA copy number aberrations and gene expression changes

Bioinformatics, Vol. 24, No. 7. (1 April 2008), pp. 889-896.

by Hyunju Lee, Sek W Kong, Peter J Park

posted to aberration cancer copy_number expression microarray pathway by ealloza on 2008-03-26 12:56:52 as

along with 5 people jcaddy barriot ptrobajo frohike srp33

EBV MicroRNAs in Primary Lymphomas and Targeting of CXCL-11 by ebv-mir-BHRF1-3

Cancer Res, Vol. 68, No. 5. (1 March 2008), pp. 1436-1442.

by Tianli Xia, Andrea O'Hara, Iguaracyra Araujo, Jose Barreto, Eny Carvalho, Jose B Sapucaia, Juan C Ramos, Estela Luz, Celia Pedroso, Michele Manrique, Ngoc L Toomey, Carlos Brites, Dirk P Dittmer, William J Harrington

posted to cancer ebv expression human microarray microrna virus by ealloza on 2008-03-06 10:10:06 as

Chromosomal rearrangements and microRNAs: a new cancer link with clinical implications.

J Clin Invest, Vol. 117, No. 8. (August 2007), pp. 2059-2066.

by GA Calin, CM Croce

posted to aberration cancer microrna rearrangement review by ealloza on 2007-11-16 10:17:50 as

OncomiRs: the discovery and progress of microRNAs in cancers

Molecular Cancer, Vol. 6 (25 September 2007), 60.

by William CS Cho

posted to cancer microrna review by ealloza on 2007-10-17 16:14:55 as

along with 2 people jyuh jfr

Computation of significance scores of unweighted Gene Set Enrichment Analyses

BMC Bioinformatics, Vol. 8, No. 1. (2007)

by Andreas Keller, Christina Backes, Hans P Lenhof

posted to algorithm gene_set_analysis by ealloza on 2007-08-06 15:03:36 as

along with 4 people and 1 group jfr shigepong GeeSharpMinor heliopais BioinfoCIPF

MicroRNA expression alterations are linked to tumorigenesis and non-neoplastic processes in pancreatic ductal adenocarcinoma

Oncogene, Vol. aop, No. current.

by AE Szafranska, TS Davison, J John, T Cannon, B Sipos, A Maghnouj, E Labourier, SA Hahn, ,

posted to cancer expression human microrna by ealloza on 2007-07-02 10:57:56 as

along with 1 person and 1 group tardigrade BioinfoCIPF

Clonal and non-clonal chromosome aberrations and genome variation and aberration

Genome, Vol. 49, No. 3. (1 March 2006), pp. 195-204.

by Heng, HQ Henry, Liu, Guo, Bremer, Steven, Ye, J Karen, Stevens, Joshua, Ye, J Christine

posted to aberration cancer chromosome human karyotype by ealloza on 2007-05-16 16:38:08 as

along with 1 group BioinfoCIPF

Modeling non-random deletions in cancer

Seminars in Cancer Biology, Vol. 17, No. 1. (February 2007), pp. 19-30.

by Maria Kost-Alimova, Stefan Imreh

posted to aberration cancer deletion human review by ealloza on 2007-04-03 15:05:15 as

along with 1 group BioinfoCIPF

Mammalian microRNAs: a small world for fine-tuning gene expression.

Mamm Genome, Vol. 17, No. 3. (March 2006), pp. 189-202.

by C Sevignani, GA Calin, LD Siracusa, CM Croce

posted to cancer instability microrna review by ealloza on 2006-11-27 19:12:44 as

along with 3 people and 4 groups eckart_bindewald andersbj dchughes microRNA G4ID BioinfoCIPF Genetics-of-Gambling

MicroRNA expression abnormalities in pancreatic endocrine and acinar tumors are associated with distinctive pathologic features and clinical behavior.

J Clin Oncol, Vol. 24, No. 29. (10 October 2006), pp. 4677-4684.

by C Roldo, E Missiaglia, JP Hagan, M Falconi, P Capelli, S Bersani, GA Calin, S Volinia, CG Liu, A Scarpa, CM Croce

posted to cancer human microarray microrna by ealloza on 2006-11-27 19:03:00 as

along with 1 group BioinfoCIPF

A microRNA expression signature of human solid tumors defines cancer gene targets.

Proc Natl Acad Sci U S A (3 February 2006)

by Stefano Volinia, George A A Calin, Chang-Gong G Liu, Stefan Ambs, Amelia Cimmino, Fabio Petrocca, Rosa Visone, Marilena Iorio, Claudia Roldo, Manuela Ferracin, Robyn L L Prueitt, Nozumu Yanaihara, Giovanni Lanza, Aldo Scarpa, Andrea Vecchione, Massimo Negrini, Curtis C C Harris, Carlo M M Croce

posted to cancer human microarray prediction by ealloza on 2006-11-27 18:51:29 as

along with 9 people and 2 groups jfr tardigrade andersbj mtagaya panetebrother Garamonfok hejin930 maralena srp33 microRNA BioinfoCIPF

Human microRNA genes are frequently located at fragile sites and genomic regions involved in cancers.

Proc Natl Acad Sci U S A, Vol. 101, No. 9. (2 March 2004), pp. 2999-3004.

by GA Calin, C Sevignani, CD Dumitru, T Hyslop, E Noch, S Yendamuri, M Shimizu, S Rattan, F Bullrich, M Negrini, CM Croce

posted to cancer hotspot human instability microrna by ealloza on 2006-11-27 18:49:19 as

along with 4 people and 1 group jfr mtagaya Garamonfok cbichsel BioinfoCIPF

MicroRNA Responses to Cellular Stress

Cancer Res, Vol. 66, No. 22. (15 November 2006), pp. 10843-10848.

by Carmen J Marsit, Karen Eddy, Karl T Kelsey

posted to microarray microrna by ealloza on 2006-11-16 09:57:16 as

along with 1 group BioinfoCIPF

An initial map of insertion and deletion (INDEL) variation in the human genome.

Genome Res, Vol. 16, No. 9. (September 2006), pp. 1182-1190.

by Ryan E E Mills, Christopher T T Luttig, Christine E E Larkins, Adam Beauchamp, Circe Tsui, W Stephen S Pittard, Scott E E Devine

posted to human indel map snp by ealloza on 2006-09-29 11:23:23 as

along with 3 people and 2 groups bpb dpollard jackjackjjj EisenLab BioinfoCIPF

Biclustering algorithms for biological data analysis: a survey

IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 1, No. 1. (2004), pp. 24-45.

by SC Madeira, AL Oliveira

posted to biclustering clustering expression review by ealloza on 2008-06-09 19:22:31 as

along with 7 people tvdbulck librain dps bozdagd carlk chrisamiller tmmurali

Mutation of miRNA target sequences during human evolution.

Trends in genetics : TIG (8 May 2008)

by Paul P P Gardner, Jeppe Vinther

posted to evolution microrna mutation target by ealloza on 2008-05-28 18:00:01 as

along with 1 person balicea

MicroRNA-encoding long non-coding RNAs

BMC Genomics, Vol. 9 (21 May 2008), 236.

by Shunmin He, Hua Su, Changning Liu, Geir Skogerbo, Housheng He, Dandan He, Xiaopeng Zhu, Tao Liu, Yi Zhao, Runsheng Chen

posted to microrna mouse by ealloza on 2008-05-22 10:24:14 as

along with 3 people biozy daforerog jfr

Maximum likelihood estimation of oncogenetic tree models

Biostatistics, Vol. 5, No. 4., 545.

by Anja v von Heydebreck

posted to aberration cancer human oncogenetic_tree_model by ealloza on 2008-04-28 18:21:22 as

A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas

Mol Syst Biol, Vol. 4 (12 February 2008)

by Kartik M Mani, Celine Lefebvre, Kai Wang, Wei K Lim, Katia Basso, Riccardo Dalla-Favera, Andrea Califano

posted to cancer computational dysregulation human systems_biology by ealloza on 2008-03-06 10:30:23 as

along with 5 people jfr tmmurali shikin dap5087 dragonrez

Systematic functional characterization of cis-regulatory motifs in human core promoters

Genome Res. (6 February 2008), gr.6828808.

by Saurabh Sinha, Adam S Adler, Yair Field, Howard Y Chang, Eran Segal

posted to functional_annotation genome-wide human microrna post-transcriptional regulation transcription transcription_factor by ealloza on 2008-03-03 10:17:18 as

along with 6 people and 1 group lp2 cabbagezs idonaldson emptyhb gracio isimpson Jarman Lab

Small non-coding RNAs in animal development

Nature Reviews Molecular Cell Biology, Vol. 9, No. 3., pp. 219-230.

by Giovanni Stefani, Frank J Slack

posted to deletion disease microrna review by ealloza on 2008-02-25 10:39:07 as

along with 2 people zhanghuiqiong maralena

Oncogenes and tumour suppressors take on centrosomes

Nature Reviews Cancer, Vol. 7, No. 12., pp. 911-924.

by Kenji Fukasawa

posted to aberration cancer centrosome chromosome by ealloza on 2008-01-09 10:38:25 as

Computational Epigenetics.

Bioinformatics (17 November 2007)

by Christoph Bock, Thomas Lengauer

posted to cancer computational epigenetics review by ealloza on 2007-12-19 14:44:27 as

along with 11 people and 1 group sebastien_vigneau djkt frohike timflutre cjeans epigenetics cabbagezs barriot Ema Thomasah jyuh Bioinformatics

Widespread microRNA repression by Myc contributes to tumorigenesis.

Nat Genet (9 December 2007)

by Tsung-Cheng C Chang, Duonan Yu, Yun-Sil S Lee, Erik A A Wentzel, Dan E E Arking, Kristin M M West, Chi V V Dang, Andrei Thomas-Tikhonenko, Joshua T T Mendell

posted to cancer microrna repression transcription_factor by ealloza on 2007-12-13 17:59:47 as

along with 6 people and 1 group jfr jackjackjjj tibbitts heliopais cocohak dbae microRNA

MicroRNA expression signatures accurately discriminate acute lymphoblastic leukemia from acute myeloid leukemia.

Proc Natl Acad Sci U S A (4 December 2007)

by Shuangli Mi, Jun Lu, Miao Sun, Zejuan Li, Hao Zhang, Mary Beth B Neilly, Yungui Wang, Zhijian Qian, Jie Jin, Yanming Zhang, Stefan K K Bohlander, Michelle M M Le Beau, Richard A A Larson, Todd R R Golub, Janet D D Rowley, Jianjun Chen

posted to cancer expression microarray microrna signature by ealloza on 2007-12-12 11:17:26 as

along with 4 people frohike tmmurali Alexander_Kanitz bootsy

Naive Bayes for MicroRNA Target Predictions Machine Learning for MicroRNA Targets.

Bioinformatics (8 October 2007)

by Malik Yousef, Segun Jung, Andrew V V Kossenkov, Louise C C Showe, Michael K K Showe

posted to machine_learning microrna mrna prediction target by ealloza on 2007-11-19 11:47:54 as

along with 4 people and 1 group mtagaya cabbagezs heliopais maralena microRNA

DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis

BMC Bioinformatics, Vol. 8 (02 November 2007), 426.

by Brad T Sherman, Da W Huang, Qina Tan, Yongjian Guo, Stephan Bour, David Liu, Robert Stephens, Michael W Baseler, Clifford H Lane, Richard A Lempicki

posted to database expression functional_annotation microarray by ealloza on 2007-11-05 17:30:43 as

along with 4 people and 1 group jyuh jfr barriot hpaces BioinfoCIPF

Array comparative genomic hybridization and computational genome annotation in constitutional cytogenetics: suggesting candidate genes for novel submicroscopic chromosomal imbalance syndromes.

Genet Med, Vol. 9, No. 9. (September 2007), pp. 642-649.

by S Van Vooren, B Coessens, B De Moor, Y Moreau, JR Vermeesch

posted to aberration acgh cytogenetics mining by ealloza on 2007-10-17 19:01:19 as

along with 1 group BioinfoCIPF

How microRNAs choose their targets

Nat Genet, Vol. 39, No. 10. (October 2007), pp. 1191-1192.

by Ivo L Hofacker

posted to microrna rna target by ealloza on 2007-10-17 18:00:07 as

along with 6 people and 2 groups dchughes rdiaz Garamonfok epigenetics heliopais yavanna microRNA BioinfoCIPF