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dpollard motif [18 articles]

最近 dpollard さんのライブラリに追加された論文の中から タグ motif. You can also see everyone's motif.
  • Binding Site Graphs: A New Graph Theoretical Framework for Prediction of Transcription Factor Binding Sites
    PLoS Computational Biology, Vol. 3, No. 5. (1 May 2007), e90.
    by Timothy E Reddy, Charles Delisi, Boris E Shakhnovich
    posted to ab_initio binding_site eisen_journal_club method motif round_robin venky_presented yeast by dpollard on 2007-06-14 23:38:43 as ** along with 5 people and 1 group aalibes medic0747 GustavoLacerda mircea marti EisenLab
  • Determination of local statistical significance of patterns in Markov sequences with application to promoter element identification.
    J Comput Biol, Vol. 11, No. 1. (2004), pp. 1-14.
    by H Huang, MC Kao, X Zhou, JS Liu, WH Wong
    posted to ab_initio binding_site eisen_journal_club markov method motif round_robin stuart_presented by dpollard on 2007-06-04 22:47:45 as * along with 1 person and 1 group jguinney EisenLab
  • STAMP: a web tool for exploring DNA-binding motif similarities.
    Nucleic Acids Res (3 May 2007)
    by Shaun Mahony, Panayiotis V V Benos
    posted to alignment method motif pwm website by dpollard on 2007-05-23 00:40:45 as * along with 1 group EisenLab
  • A phylogenetic Gibbs sampler that yields centroid solutions for cis regulatory site prediction.
    Bioinformatics (8 May 2007)
    by Lee A A Newberg, William A A Thompson, Sean Conlan, Thomas M M Smith, Lee Ann A McCue, Charles E E Lawrence
    posted to cis_regulatory_elements clustering discovery method motif prediction by dpollard on 2007-05-23 00:29:25 as ** along with 3 people and 1 group cjeans sconlan siebert EisenLab
  • Clustering of phosphorylation site recognition motifs can be exploited to predict the targets of cyclin-dependent kinase.
    Genome Biology, Vol. 8 (22 February 2007), R23.
    by Alan M Moses, Jean-Karim Heriche, Richard Durbin
    posted to clustering motif protein by dpollard on 2007-03-27 16:28:13 as ** along with 1 person and 1 group gjuggler EisenLab
  • Discovering Motifs in Ranked Lists of DNA Sequences
    PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e39.
    by Eran Eden, Doron Lipson, Sivan Yogev, Zohar Yakhini
    posted to chip_chip dan_presented eisen_journal_club motif prediction pwm round_robin by dpollard on 2007-03-23 00:19:21 as *** along with 3 people and 1 group dquest yevishere chad_davis EisenLab
  • Prediction of cis-regulatory elements using binding site matrices--the successes, the failures and the reasons for both.
    Curr Opin Genet Dev, Vol. 15, No. 4. (August 2005), pp. 395-402.
    by T Vavouri, G Elgar
    posted to binding_site cis_regulatory_elements method motif pattern prediction pwm regulatory_sequence by dpollard on 2007-03-15 00:24:34 as *** along with 6 people and 2 groups troels_marstrand kaspermunch adepace lusk Stew brant Bioinformatics EisenLab
  • Integrating transcription factor binding site information with gene expression datasets.
    Bioinformatics (24 November 2006)
    by Ian B B Jeffery, Stephen F F Madden, Paul A A McGettigan, Guy Perrière, Aedín C C Culhane, Desmond G G Higgins
    posted to motif micro_array gene expression correlation by dpollard on 2007-01-19 16:12:50 as * along with 4 people and 1 group jyuh gpalidwor wnpx SeungjoonOh EisenLab
  • Identification of degenerate motifs using position restricted selection and hybrid ranking combination.
    Nucleic Acids Res, Vol. 34, No. 22. (2006), pp. 6379-6391.
    by CH Peng, JT Hsu, YS Chung, YJ Lin, WY Chow, DF Hsu, CY Tang
    posted to motif detection by dpollard on 2007-01-19 16:08:24 as * along with 1 group EisenLab
  • Large Scale Discovery of Promoter Motifs in Drosophila melanogaster
    PLoS Computational Biology, Vol. preprint, No. 2006. (1 December 2006), e7.eor.
    by Thomas A Down, Casey M Bergman, Jing Su, Tim J Hubbard
    posted to drosophila eisen_journal_club emily_presented motif prediction promoter round_robin by dpollard on 2006-12-13 22:18:54 as **** along with 1 group EisenLab
  • NestedMICA: sensitive inference of over-represented motifs in nucleic acid sequence
    Nucleic Acids Research, Vol. 33, No. 5. (2005), pp. 1445-1453.
    by Thomas A Down, Tim J Hubbard
    posted to dan_presented discovery eisen_journal_club motif round_robin by dpollard on 2006-12-13 22:14:20 as read along with 4 people and 1 group emptyhb lyongu dquest waszak EisenLab
  • Single-Molecule Detection of Transcription Factor Binding to DNA in Real Time: Specificity, Equilibrium, and Kinetic Parameters.
    Biochemistry, Vol. 45, No. 46. (21 November 2006), pp. 13794-13806.
    by Eric A Nalefski, Eugene Nebelitsky, Janice A Lloyd, Steven R Gullans
    posted to binding kenetics method motif by dpollard on 2006-11-17 13:00:37 as ** along with 1 group EisenLab
  • Evolutionary distances for protein-coding sequences: modeling site-specific residue frequencies.
    Mol Biol Evol, Vol. 15, No. 7. (July 1998), pp. 910-917.
    by AL Halpern, WJ Bruno
    posted to constraint evolution model motif mutation phylogeny selection by dpollard on 2006-11-07 00:11:19 as read along with 1 person and 1 group lusk EisenLab
  • Transcriptional repression in the Drosophila embryo.
    Philos Trans R Soc Lond B Biol Sci, Vol. 349, No. 1329. (29 September 1995), pp. 257-262.
    by S Gray, H Cai, S Barolo, M Levine
    posted to binding coactivator corepression development drosophila embryo expression grammar insulators mechanism model motif promoter range review short transcription by dpollard on 2006-10-11 18:29:07 as read along with 1 group EisenLab
  • Regulation of the immunoglobulin heavy chain locus expression at the phylogenetic level of a bony fish: Transcription factor interaction with two variant octamer motifs.
    Gene (5 June 2006)
    by Jun-Ichi I Hikima, Mara L L Lennard, Melanie R R Wilson, Norman W W Miller, Gregory W W Warr
    posted to binding grammar motif promoter spacing transcription by dpollard on 2006-06-16 20:44:19 as ** along with 1 group EisenLab
  • Enhancing the prediction of transcription factor binding sites by incorporating structural properties and nucleotide covariations.
    J Comput Biol, Vol. 13, No. 4. (May 2006), pp. 929-945.
    by S Gunewardena, P Jeavons, Z Zhang
    posted to binding motif prediction structure transcription by dpollard on 2006-06-16 20:40:23 as ** along with 2 people and 1 group samal nklee EisenLab
  • Evaluating phylogenetic footprinting for human-rodent comparisons.
    Bioinformatics, Vol. 22, No. 4. (15 February 2006), pp. 430-437.
    by T Sauer, E Shelest, E Wingender
    posted to alignment binding conserved evolution mammal motif rate transcription vertebrate by dpollard on 2006-05-01 22:45:46 as ** along with 1 group EisenLab
  • A survey of motif discovery methods in an integrated framework
    Biology Direct, Vol. 1, No. 1. (06 April 2006), 11.
    by Geir K Sandve, Finn Drabløs
    posted to discovery motif review by dpollard on 2006-04-08 23:19:50 as ** along with 6 people and 1 group aprasad samal yevishere csdhwang idonaldson yoonk EisenLab
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