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djkt phylogenetics [30 articles]

最近 djkt さんのライブラリに追加された論文の中から タグ phylogenetics. You can also see everyone's phylogenetics.
  • Accurate phylogenetic classification of variable-length DNA fragments
    Nature Methods, Vol. 4, No. 1. (10 December 2006), pp. 63-72.
    by Alice C Mchardy, Héctor G Martín, Aristotelis Tsirigos, Philip Hugenholtz, Isidore Rigoutsos
    posted to phylogenetics microbes metagenomics by djkt on 2008-07-29 20:01:28 as read along with 4 people and 3 groups jlgreen bluto azazello wenhan iSEEM Green Lab MBLAB
  • Quantitative Phylogenetic Assessment of Microbial Communities in Diverse Environments
    Science, Vol. 315, No. 5815. (23 February 2007), pp. 1126-1130.
    by C von Mering, P Hugenholtz, J Raes, SG Tringe, T Doerks, LJ Jensen, N Ward, P Bork
    posted to phylogenetics microbes metagenomics evolution by djkt on 2008-07-29 19:58:59 as read along with 12 people and 7 groups jlgreen mjetten ana nickluscombe michC bluto agg19954 TaqSys azazello Thaverkamp larsjuhljensen rvgomes iSEEM Green Lab microbiology_nijmegen structural_bioinformatics Bioinformatics EBI-regulation Microbial-Ecology
  • UniFrac - An online tool for comparing microbial community diversity in a phylogenetic context
    BMC Bioinformatics, Vol. 7 (07 August 2006), 371.
    by Catherine Lozupone, Micah Hamady, Rob Knight
    posted to phylogenetics metagenomics diversity by djkt on 2008-07-24 18:45:57 as read along with 1 person and 1 group mcox iSEEM
  • Phylogenetic Approaches for Describing and Comparing the Diversity of Microbial Communities
    Appl. Environ. Microbiol., Vol. 68, No. 8. (1 August 2002), pp. 3673-3682.
    by Andrew P Martin
    posted to phylogenetics metagenomics diversity by djkt on 2008-07-24 18:45:14 as read along with 4 people and 2 groups Olaf_Ilzins mcox jmeppley Thaverkamp iSEEM Microbial-Ecology
  • Testing for Differentiation of Microbial Communities Using Phylogenetic Methods: Accounting for Uncertainty of Phylogenetic Inference and Character State Mapping
    Microbial Ecology, Vol. 52, No. 3. (October 2006), pp. 408-417.
    by Jones, Ryan, Martin, Andrew
    posted to phylogenetics metagenomics diversity by djkt on 2008-07-24 18:44:28 as read along with 1 group iSEEM
  • Introducing TreeClimber, a test to compare microbial community structures.
    Applied and environmental microbiology, Vol. 72, No. 4. (April 2006), pp. 2379-2384.
    by PD Schloss, J Handelsman
    posted to phylogenetics metagenomics diversity by djkt on 2008-07-24 18:42:35 as read along with 1 person and 1 group mcox iSEEM
  • Introducing SONS, a tool for operational taxonomic unit-based comparisons of microbial community memberships and structures.
    Applied and environmental microbiology, Vol. 72, No. 10. (October 2006), pp. 6773-6779.
    by PD Schloss, J Handelsman
    posted to phylogenetics metagenomics diversity by djkt on 2008-07-24 18:30:20 as read along with 1 person and 1 group sconlan iSEEM
  • Alignment-independent bilinear multivariate modelling (AIBIMM) for global analyses of 16S rRNA gene phylogeny.
    Int J Syst Evol Microbiol, Vol. 56, No. Pt 7. (July 2006), pp. 1565-1575.
    by Knut Rudi, Monika Zimonja, Tormod Næs
    posted to rna phylogenetics metagenomics by djkt on 2008-07-24 18:24:08 as read along with 1 person and 1 group Bevan_Weir iSEEM
  • Phylogenetic Signal in the Eukaryotic Tree of Life
    Science, Vol. 321, No. 5885. (4 July 2008), pp. 121-123.
    by Michael J Sanderson
    posted to phylogenetics by djkt on 2008-07-06 19:00:16 as ** along with 7 people and 3 groups jlgreen aprasad stajich gulsacan dchughes marck caseybrown iSEEM Green Lab Berkeley Mycology
  • Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis
    Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635.
    by Ari Loytynoja, Nick Goldman
    posted to phylogenetics msa evolution alignment by djkt on 2008-06-20 16:18:18 as ** along with 22 people and 3 groups marti nuin emptyhb michaelbarton jlgreen AbnerCYH bpcusack bmaust gulsacan Schmidtc bpb zwang aprasad imtechnology marck ArtemPankin gjuggler hpaces dinnes chad_davis jago phoenixzxl iSEEM Green Lab Khavkin's lab
  • Confusing Kinships
    Science, Vol. 320, No. 5879. (23 May 2008), pp. 1031-1033.
    by John Bohannon
    posted to review phylogenetics microbes by djkt on 2008-05-23 17:20:20 as read along with 1 group iSEEM
  • Microbial Biogeography: From Taxonomy to Traits
    Science, Vol. 320, No. 5879. (23 May 2008), pp. 1039-1043.
    by Jessica L Green, Brendan J Bohannan, Rachel J Whitaker
    posted to review phylogenetics microbes metagenomics ecology by djkt on 2008-05-23 17:15:53 as ** along with 5 people and 5 groups dbensasson dbikard vaulot stajich jdelcampo iSEEM Centre de Recherches Interdisciplinaires Papers recommended by the Roscoff Plankton Group Berkeley Mycology Microbial-Ecology
  • Investigations of Oligonucleotide Usage Variance Within and Between Prokaryotes
    posted to phylogenetics msa microbes evolution by djkt on 2008-04-19 05:19:34 as ** along with 1 person aprasad
  • Higher origination and extinction rates in larger mammals
    Proceedings of the National Academy of Sciences (15 April 2008), 0709763105.
    by Lee H Liow, Mikael Fortelius, Ella Bingham, Kari Lintulaakso, Heikki Mannila, Larry Flynn, Nils C Stenseth
    posted to evolution phylogenetics primates by djkt on 2008-04-16 18:08:27 as **
  • Inferring Complex DNA Substitution Processes on Phylogenies Using Uniformization and Data Augmentation
    Systematic Biology, Vol. 55, No. 2. (April 2006), pp. 259-269.
    by Ligia Mateiu, Bruce Rannala
    posted to divergence evolution phylogenetics by djkt on 2008-03-07 19:50:57 as **
  • Comparing Patterns of Natural Selection across Species Using Selective Signatures
    PLoS Genetics, Vol. 4, No. 2. (1 February 2008), e23.
    by Jesse B Shapiro, Eric J Alm
    posted to selection phylogenetics microbes evolution by djkt on 2008-02-08 19:59:29 as ** along with 3 people operon Garamonfok qwermish
  • Phylocomposer and phylodirector: analysis and visualization of transducer indel models
    Bioinformatics, Vol. 23, No. 23. (1 December 2007), pp. 3263-3264.
    by Ian Holmes
    posted to alignment evolution indel phylogenetics by djkt on 2007-11-27 17:01:27 as ** along with 3 people smbe2008 balicea ryanraaum
  • Molecular and Genomic Data Identify the Closest Living Relative of Primates
    Science, Vol. 318, No. 5851. (2 November 2007), pp. 792-794.
    by Jan E Janecka, Webb Miller, Thomas H Pringle, Frank Wiens, Annette Zitzmann, Kristofer M Helgen, Mark S Springer, William J Murphy
    posted to phylogenetics primates by djkt on 2007-11-02 21:42:45 as ** along with 4 people aprasad dchughes zwang hpaces
  • Viral Evolution in the Genomic Age
    PLoS Biology, Vol. 5, No. 10. (1 October 2007), e278.
    by Edward C Holmes
    posted to acceleration ecology evolution phylogenetics virus by djkt on 2007-10-02 20:25:08 as *** along with 3 people dayjm dullhunk zwang
  • The evolutionary forest algorithm
    Bioinformatics, Vol. 23, No. 15. (1 August 2007), pp. 1962-1968.
    by Scotland C Leman, Marcy K Uyenoyama, Michael Lavine, Yuguo Chen
    posted to evolution phylogenetics by djkt on 2007-08-15 17:29:23 as ** along with 1 person ryanraaum
  • Genetic Association Mapping via Evolution-Based Clustering of Haplotypes
    posted to association evolution phylogenetics by djkt on 2007-07-06 17:54:25 as **
  • Large scale genotype-phenotype correlation analysis based on phylogenetic trees.
    Bioinformatics (31 January 2007)
    by Farhat Habib, Andrew D D Johnson, Ralf Bundschuh, Daniel Janies
    posted to association phylogenetics prediction by djkt on 2007-04-26 20:43:08 as ** along with 4 people farhat balicea smbe2008 shigepong
  • Founder Effects in the Assessment of HIV Polymorphisms and HLA Allele Associations
    Science, Vol. 315, No. 5818. (16 March 2007), pp. 1583-1586.
    by Tanmoy Bhattacharya, Marcus Daniels, David Heckerman, Brian Foley, Nicole Frahm, Carl Kadie, Jonathan Carlson, Karina Yusim, Ben Mcmahon, Brian Gaschen, Simon Mallal, James I Mullins, David C Nickle, Joshua Herbeck, Christine Rousseau, Gerald H Learn, Toshiyuki Miura, Christian Brander, Bruce Walker, Bette Korber
    posted to acceleration evolution hiv phylogenetics selection by djkt on 2007-03-16 16:31:30 as **
  • Evolutionary simulations to detect functional lineage-specific genes
    Bioinformatics, Vol. 22, No. 15. (1 August 2006), pp. 1815-1822.
    by Isabelle Dupanloup, Henrik Kaessmann
    posted to acceleration conservation evolution msa phylogenetics by djkt on 2006-09-01 16:12:34 as ** along with 1 person BioNica
  • Genomics. Vertebrate genomes compared
    Science, Vol. 297 (2002), pp. 1283-1285.
    by SB Hedges, S Kumar
    posted to divergence msa phylogenetics by djkt on 2006-08-04 01:21:22 as read
  • On the use of nucleic acid sequences to infer early branchings in the tree of life
    Mol Biol Evol, Vol. 12, No. 3. (1 May 1995), pp. 451-458.
    by Z Yang, D Roberts
    posted to evolution msa phylogenetics by djkt on 2006-08-04 00:38:57 as read
  • Evolutionary trees from DNA sequences: a maximum likelihood approach.
    J Mol Evol, Vol. 17, No. 6. (1981), pp. 368-376.
    by J Felsenstein
    posted to evolution msa phylogenetics by djkt on 2006-08-04 00:38:05 as read along with 7 people and 1 group bpb chrn kaspermunch dquest timflutre dmc elfar Bioinformatics
  • Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.
    Genome Res, Vol. 15, No. 8. (August 2005), pp. 1034-1050.
    by A Siepel, G Bejerano, JS Pedersen, AS Hinrichs, M Hou, K Rosenbloom, H Clawson, J Spieth, LW Hillier, S Richards, GM Weinstock, RK Wilson, RA Gibbs, WJ Kent, W Miller, D Haussler
    posted to conservation evolution msa phylogenetics selection by djkt on 2006-08-04 00:33:54 as read along with 15 people and 3 groups AlexanderPico pradiptaray bpb aprasad balajis eckart_bindewald indigoviolet brant adepace olympos sujaikumar Stew cisevol dmc elfar ConklinLab EisenLab cis-regulatory-evolution
  • Phylogenetic estimation of context-dependent substitution rates by maximum likelihood.
    Mol Biol Evol, Vol. 21, No. 3. (March 2004), pp. 468-488.
    by A Siepel, D Haussler
    posted to hmm msa phylogenetics by djkt on 2006-08-04 00:21:46 as read along with 4 people mdimmic penka tale uwe
  • Combining phylogenetic and hidden Markov models in biosequence analysis
    Journal of Computational Biology, Vol. 11, No. 2-3. (2004), pp. 413-428.
    by Adam Siepel, David Haussler
    posted to hmm msa phylogenetics by djkt on 2006-08-04 00:19:37 as read
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