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djkt expression [104 articles]

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  • Coexpression of Linked Genes in Mammalian Genomes Is Generally Disadvantageous
    Mol Biol Evol, Vol. 25, No. 8. (1 August 2008), pp. 1555-1565.
    by Ben-Yang Liao, Jianzhi Zhang
    posted to expression evolution chromosome by djkt on 2008-07-18 21:09:16 as ** along with 1 person aprasad
  • DNA methylation and structural and functional bimodality of vertebrate promoters.
    Molecular biology and evolution, Vol. 25, No. 8. (August 2008), pp. 1602-1608.
    by N Elango, SV Yi
    posted to tf expression evolution epigenetics by djkt on 2008-07-18 21:07:58 as **
  • Evolution of Evolvability in Gene Regulatory Networks
    PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000112.
    by Anton Crombach, Paulien Hogeweg
    posted to sysbio expression evolution by djkt on 2008-07-17 23:34:58 as ** along with 7 people and 1 group jdiezperezj erel10 dquest Stew dlobo bootsy Ema GEB
  • Revealing the architecture of gene regulation: the promise of eQTL studies
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Yoav Gilad, Scott A Rifkin, Jonathan K Pritchard
    posted to qtl expression by djkt on 2008-07-06 18:45:57 as ** along with 1 person caseybrown
  • Dissecting direct reprogramming through integrative genomic analysis
    Nature (28 May 2008)
    by Tarjei S Mikkelsen, Jacob Hanna, Xiaolan Zhang, Manching Ku, Marius Wernig, Patrick Schorderet, Bradley E Bernstein, Rudolf Jaenisch, Eric S Lander, Alexander Meissner
    posted to stemcells expression epigenetics by djkt on 2008-07-02 22:32:26 as ** along with 3 people inesdesantiago jasonflannick zwang
  • Identification and analysis of ancestral hominoid transcriptome inferred from cross-species transcript and processed pseudogene comparisons
    Genome Res., Vol. 18, No. 7. (1 July 2008), pp. 1163-1170.
    by Yao-Ting Huang, Feng-Chi Chen, Chiuan-Jung Chen, Hsin-Liang Chen, Trees-Juen Chuang
    posted to splicing primates expression evolution duplication by djkt on 2008-07-01 19:27:10 as ** along with 1 person dchughes
  • Two strategies for gene regulation by promoter nucleosomes
    Genome Res. (30 April 2008), gr.076059.108.
    by Itay Tirosh, Naama Barkai
    posted to yeast expression chromatin by djkt on 2008-07-01 19:20:59 as ** along with 8 people inesdesantiago dchughes aalibes fpattyn vega emptyhb roys nklee
  • Combinatorial patterns of histone acetylations and methylations in the human genome
    Nat Genet, Vol. 40, No. 7. (July 2008), pp. 897-903.
    by Zhibin Wang, Chongzhi Zang, Jeffrey A Rosenfeld, Dustin E Schones, Artem Barski, Suresh Cuddapah, Kairong Cui, Tae-Young Roh, Weiqun Peng, Michael Q Zhang, Keji Zhao
    posted to human expression epigenetics by djkt on 2008-06-27 19:58:40 as ** along with 5 people inesdesantiago bpcusack caseybrown kengg kambiz
  • Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation
    PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000106.
    by Emily E Hare, Brant K Peterson, Venky N Iyer, Rudolf Meier, Michael B Eisen
    posted to tf fly expression evolution by djkt on 2008-06-27 19:47:07 as ** along with 5 people and 2 groups emptyhb pradiptaray cisevol caseybrown stajich cis-regulatory-evolution Berkeley Mycology
  • Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
    Nature (18 May 2008)
    by Brian T Wilhelm, Samuel Marguerat, Stephen Watt, Falk Schubert, Valerie Wood, Ian Goodhead, Christopher J Penkett, Jane Rogers, Jürg Bähler
    posted to yeast sequencing expression by djkt on 2008-06-25 22:00:06 as ** along with 5 people and 1 group myourshaw jyuh caseybrown GeeSharpMinor jonathanjacobs Molecular Biology
  • An Evolutionarily Conserved Sexual Signature in the Primate Brain
    PLoS Genet, Vol. 4, No. 6. (20 June 2008), e1000100.
    by Björn Reinius, Peter Saetre, Jennifer A Leonard, Ran Blekhman, Roxana Merino-Martinez, Yoav Gilad, Elena Jazin
    posted to primates expression divergence by djkt on 2008-06-21 01:17:33 as ** along with 1 person kambiz
  • Proliferating Cells Express mRNAs with Shortened 3' Untranslated Regions and Fewer MicroRNA Target Sites
    Science, Vol. 320, No. 5883. (20 June 2008), pp. 1643-1647.
    by Rickard Sandberg, Joel R Neilson, Arup Sarma, Phillip A Sharp, Christopher B Burge
    posted to rna expression by djkt on 2008-06-20 16:34:08 as ** along with 5 people faion dchughes emptyhb bootsy lisa1
  • The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing
    Science (1 May 2008), 1158441.
    by Ugrappa Nagalakshmi, Zhong Wang, Karl Waern, Chong Shou, Debasish Raha, Mark Gerstein, Michael Snyder
    posted to yeast sequencing expression by djkt on 2008-06-10 22:31:03 as ** along with 11 people and 1 group mapplab GeeSharpMinor urgi faion semrich biomcgary chad_davis Retchless gjuggler caseybrown stajich Berkeley Mycology
  • Identification of active transcriptional regulatory modules by the functional assay of DNA from nucleosome-free regions.
    Genome research (25 April 2008)
    by Mahesh Yaragatti, Claudio Basilico, Lisa Dailey
    posted to tf expression epigenetics annotation by djkt on 2008-06-03 06:25:13 as ** along with 1 person maximilianh
  • Random monoallelic expression: making a choice.
    Trends in genetics : TIG (29 April 2008)
    by Christel Krueger, Ian M M Morison
    posted to expression evolution epigenetics by djkt on 2008-05-28 16:24:29 as ** along with 2 people bpcusack rschulz
  • Endogenous siRNAs Derived from Transposons and mRNAs in Drosophila Somatic Cells
    Science, Vol. 320, No. 5879. (23 May 2008), pp. 1077-1081.
    by Megha Ghildiyal, Herve Seitz, Michael D Horwich, Chengjian Li, Tingting Du, Soohyun Lee, Jia Xu, Ellen L Kittler, Maria L Zapp, Zhiping Weng, Phillip D Zamore
    posted to rna fly expression by djkt on 2008-05-23 17:03:00 as **
  • Transcription induces strand specific mutations at the 5' end of human genes
    Genome Res. (7 May 2008), gr.076570.108.
    by Paz Polak, Peter F Arndt
    posted to expression bgc by djkt on 2008-05-13 16:50:45 as **
  • Complex genetic interactions underlying expression differences between Drosophila races: Analysis of chromosome substitutions
    Proceedings of the National Academy of Sciences (22 April 2008), 0711774105.
    by Hurng-Yi Wang, Yonggui Fu, Mary S Mcpeek, Xuemei Lu, Sergey Nuzhdin, Anlong Xu, Jian Lu, Mao-Lien Wu, Chung-I Wu
    posted to qtl fly expression evolution by djkt on 2008-04-24 17:31:11 as ** along with 2 people brant maximilianh
  • Gene regulation: Repositioning tunes expression
    Nature Reviews Genetics, Vol. 9, No. 5., pp. 322-323.
    by Louisa Flintoft
    posted to evolution expression tf by djkt on 2008-04-19 04:52:41 as ** along with 1 person echinotrix
  • Gene–Environment Interaction in Yeast Gene Expression
    PLoS Biology, Vol. 6, No. 4. (1 April 2008), e83.
    by Erin N Smith, Leonid Kruglyak
    posted to expression popgen yeast by djkt on 2008-04-15 22:25:53 as **
  • A Test of the Null Model for 5' UTR Evolution Based on GC Content
    Mol Biol Evol, Vol. 25, No. 5. (1 May 2008), pp. 801-804.
    by Max Reuter, Jan Engelstadter, Pierre Fontanillas, Laurence D Hurst
    posted to bgc evolution expression by djkt on 2008-04-14 20:37:31 as ** along with 1 person emptyhb
  • Independent effects of cis- and trans-regulatory variation on gene expression in Drosophila melanogaster
    Genetics (3 February 2008), genetics.107.082032.
    by Patricia J Wittkopp, Belinda K Haerum, Andrew G Clark
    posted to expression fly popgen qtl by djkt on 2008-04-02 05:07:15 as ** along with 4 people and 3 groups dpollard mimulus_99 brant stajich RockmanLab cis-regulatory-evolution EisenLab
  • Global Chromatin Domain Organization of the Drosophila Genome
    posted to epigenetics evolution expression fly by djkt on 2008-03-28 22:35:13 as **
  • Evolution of Eukaryotic Transcription Circuits
    Science, Vol. 319, No. 5871. (28 March 2008), pp. 1797-1799.
    by Brian B Tuch, Hao Li, Alexander D Johnson
    posted to evolution expression by djkt on 2008-03-28 16:54:41 as ** along with 1 person AbnerCYH
  • Variations in DNA elucidate molecular networks that cause disease
    Nature (16 March 2008)
    by Yanqing Chen, Jun Zhu, Pek Y Lum, Xia Yang, Shirly Pinto, Douglas J Macneil, Chunsheng Zhang, John Lamb, Stephen Edwards, Solveig K Sieberts, Amy Leonardson, Lawrence W Castellini, Susanna Wang, Marie-France Champy, Bin Zhang, Valur Emilsson, Sudheer Doss, Anatole Ghazalpour, Steve Horvath, Thomas A Drake, Aldons J Lusis, Eric E Schadt
    posted to expression qtl rodents by djkt on 2008-03-27 16:31:23 as ** along with 11 people and 1 group chrisamiller echinotrix jyuh natstreet sanchezbuelna raiyar lp2 jo_davies shikin caseybrown ptrobajo GeneGo
  • Genetics of gene expression and its effect on disease
    Nature (16 March 2008)
    by Valur Emilsson, Gudmar Thorleifsson, Bin Zhang, Amy S Leonardson, Florian Zink, Jun Zhu, Sonia Carlson, Agnar Helgason, Bragi G Walters, Steinunn Gunnarsdottir, Magali Mouy, Valgerdur Steinthorsdottir, Gudrun H Eiriksdottir, Gyda Bjornsdottir, Inga Reynisdottir, Daniel Gudbjartsson, Anna Helgadottir, Aslaug Jonasdottir, Adalbjorg Jonasdottir, Unnur Styrkarsdottir, Solveig Gretarsdottir, Kristinn P Magnusson, Hreinn Stefansson, Ragnheidur Fossdal, Kristleifur Kristjansson, Hjortur G Gislason, Tryggvi Stefansson, Bjorn G Leifsson, Unnur Thorsteinsdottir, John R Lamb, Jeffrey R Gulcher, Marc L Reitman, Augustine Kong, Eric E Schadt, Kari Stefansson
    posted to expression qtl by djkt on 2008-03-27 16:27:44 as ** along with 12 people and 1 group echinotrix Borelli jyuh smbe2008 natstreet sanchezbuelna lp2 jo_davies shikin caseybrown ptrobajo vplagnol GeneGo
  • Recruitment to the Nuclear Periphery Can Alter Expression of Genes in Human Cells
    posted to expression by djkt on 2008-03-21 18:47:52 as **
  • Dynamic Remodeling of Individual Nucleosomes Across a Eukaryotic Genome in Response to Transcriptional Perturbation
    PLoS Biology, Vol. 6, No. 3. (1 March 2008), e65.
    by Sushma Shivaswamy, Akshay Bhinge, Yongjun Zhao, Steven Jones, Martin Hirst, Vishwanath R Iyer
    posted to epigenetics expression by djkt on 2008-03-18 21:12:15 as ** along with 2 people vega lusk
  • From Classical Genetics to Quantitative Genetics to Systems Biology: Modeling Epistasis
    posted to expression qtl by djkt on 2008-03-14 21:43:43 as ** along with 1 person braingrind
  • Functional Characterization of Variations on Regulatory Motifs
    posted to expression tf variation by djkt on 2008-03-10 20:20:05 as **
  • Evolution of protein-coding genes in Drosophila
    Trends in Genetics, Vol. 24, No. 3. (March 2008), pp. 114-123.
    by Amanda M Larracuente, Timothy B Sackton, Anthony J Greenberg, Alex Wong, Nadia D Singh, David Sturgill, Yu Zhang, Brian Oliver, Andrew G Clark
    posted to evolution expression fly proteins by djkt on 2008-02-28 17:51:51 as ** along with 2 people operon gjuggler
  • Evolution of gene sequence and gene expression are not correlated in yeast
    Trends in Genetics, Vol. 24, No. 3. (March 2008), pp. 109-113.
    by Itay Tirosh, Naama Barkai
    posted to evolution expression proteins yeast by djkt on 2008-02-28 17:50:31 as ** along with 2 people gjuggler huali
  • Regulatory changes underlying expression differences within and between Drosophila species.
    Nat Genet (17 February 2008)
    by Patricia J J Wittkopp, Belinda K K Haerum, Andrew G G Clark
    posted to evolution expression fly by djkt on 2008-02-27 19:26:20 as ** along with 3 people gjuggler brant mimulus_99
  • Identification of Motifs That Are Conserved in 12 Drosophila Species and Regulate Midline Glia vs. Neuron Expression
    Genetics, Vol. 178, No. 2. (1 February 2008), pp. 787-799.
    by Patricia Estes, Eric Fulkerson, Yi Zhang
    posted to conservation expression fly tf by djkt on 2008-02-20 19:36:06 as **
  • Subfunctionalization of Duplicated Zebrafish pax6 Genes by cis-Regulatory Divergence
    PLoS Genetics, Vol. 4, No. 2. (1 February 2008), e29.
    by Dirk A Kleinjan, Ruth M Bancewicz, Philippe Gautier, Ralf Dahm, Helia B Schonthaler, Giuseppe Damante, Anne Seawright, Ann M Hever, Patricia L Yeyati, Veronica van Heyningen, Pedro Coutinho
    posted to evolution expression pax6 by djkt on 2008-02-15 19:33:06 as **
  • Do Alu repeats shape the primate transcriptome?
    Genome Biology, Vol. 9, No. 2. (2008)
    by Araxi Urrutia, Leandro B Ocana, Laurence Hurst
    posted to epigenetics evolution expression primates by djkt on 2008-02-12 06:12:11 as ** along with 3 people and 2 groups dchughes biomcgary cisevol cis-regulatory-evolution BergmanLab
  • Cis and trans regulatory effects contribute to natural variation in transcriptome of Drosophila melanogaster
    Mol Biol Evol (12 November 2007), msm247.
    by Anne Genissel, Lauren M Mcintyre, Marta L Wayne, Sergey V Nuzhdin
    posted to expression fly popgen by djkt on 2008-02-04 16:43:08 as ** along with 1 person mimulus_99
  • Differential Allelic Expression in the Human Genome: A Robust Approach to Identify Genetic and Epigenetic Cis-Acting Mechanisms Regulating Gene Expression
    PLoS Genetics, Vol. preprint, No. 2008. (1 January 2008), e6.eor.
    by David Serre, Scott Gurd, Bing Ge, Robert Sladek, Donna Sinnett, Eef Harmsen, Marina Bibikova, Eugene Chudin, David L Barker, Todd Dickinson, Jian-Bing Fan, Thomas J Hudson
    posted to expression variation by djkt on 2008-02-01 18:45:39 as **
  • Predicting expression patterns from regulatory sequence in Drosophila segmentation
    Nature (02 January 2008)
    by Eran Segal, Tali Raveh-Sadka, Mark Schroeder, Ulrich Unnerstall, Ulrike Gaul
    posted to expression fly tf by djkt on 2008-01-30 19:42:26 as ** along with 12 people siebert tresch tmmurali eckart_bindewald bootsy biomcgary idonaldson roys emptyhb pkharchenko meiklej jrest
  • Concurrent Fast and Slow Cycling of a Transcriptional Activator at an Endogenous Promoter
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 466-469.
    by Tatiana S Karpova, Min J Kim, Corentin Spriet, Kip Nalley, Timothy J Stasevich, Zoulika Kherrouche, Laurent Heliot, James G Mcnally
    posted to expression tf by djkt on 2008-01-25 15:06:35 as ** along with 3 people margaritis cjeans caseybrown
  • Control of Genic DNA Methylation by a jmjC Domain-Containing Protein in Arabidopsis thaliana
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 462-465.
    by Hidetoshi Saze, Akiko Shiraishi, Asuka Miura, Tetsuji Kakutani
    posted to epigenetics expression by djkt on 2008-01-25 15:05:22 as ** along with 3 people epigenetics biomcgary mclarenv
  • Evaluating the role of natural selection in the evolution of gene regulation
    Heredity, Vol. aop, No. current.
    by JC Fay, PJ Wittkopp
    posted to evolution expression review selection by djkt on 2008-01-24 21:44:12 as ** along with 4 people and 2 groups gjuggler dpollard cisevol emptyhb EisenLab cis-regulatory-evolution
  • In Silico Detection of Sequence Variations Modifying Transcriptional Regulation
    PLoS Computational Biology, Vol. 4, No. 1. (1 January 2008), e5.
    by Malin C Andersen, Pär G Engström, Stuart Lithwick, David Arenillas, Per Eriksson, Boris Lenhard, Wyeth W Wasserman, Jacob Odeberg
    posted to expression snps tf by djkt on 2008-01-19 04:55:35 as ** along with 1 person renatomilani
  • Systematic analysis of transcribed loci in ENCODE regions using RACE sequencing reveals extensive transcription in the human genome
    Genome Biology, Vol. 9 (03 January 2008), R3.
    by Jia Q Wu, Jiang Du, Joel Rozowsky, Zhengdong Zhang, Alexander E Urban, Ghia Euskirchen, Sherman Weissman, Mark Gerstein, Michael Snyder
    posted to annotation expression by djkt on 2008-01-12 17:05:20 as **
  • Evolution and Selection in Yeast Promoters: Analyzing the Combined Effect of Diverse Transcription Factor Binding Sites
    PLoS Computational Biology, Vol. 4, No. 1. (1 January 2008), e7.
    by Daniela Raijman, Ron Shamir, Amos Tanay
    posted to evolution expression tf yeast by djkt on 2008-01-11 18:35:48 as ** along with 1 person jrest
  • Regulatory Pathway Analysis by High-Throughput In Situ Hybridization
    PLoS Genetics, Vol. 3, No. 10. (1 October 2007), e178.
    by Axel Visel, James Carson, Judit Oldekamp, Marei Warnecke, Vladimira Jakubcakova, Xunlei Zhou, Chad A Shaw, Gonzalo Alvarez-Bolado, Gregor Eichele
    posted to development expression rodents tf by djkt on 2007-10-19 23:59:35 as **
  • A genome-wide association study of global gene expression
    Nature Genetics, Vol. 39, No. 10. (16 September 2007), pp. 1202-1207.
    by Anna L Dixon, Liming Liang, Miriam F Moffatt, Wei Chen, Simon Heath, Kenny CC Wong, Jenny Taylor, Edward Burnett, Ivo Gut, Martin Farrall, Mark G Lathrop, Gonçalo R Abecasis, William OC Cookson
    posted to expression qtl by djkt on 2007-10-11 18:35:26 as ** along with 5 people balicea rdiaz vplagnol jo_davies mimulus_99
  • Gene duplication and the adaptive evolution of a classic genetic switch
    Nature, Vol. 449, No. 7163. (11 October 2007), pp. 677-681.
    by Chris T Hittinger, Sean B Carroll
    posted to evolution expression yeast by djkt on 2007-10-10 22:45:10 as ** along with 8 people and 2 groups clearbluespring skumagai mcphee dpollard dchughes biomcgary blobbybirdman kjlipin EisenLab cis-regulatory-evolution
  • Functional Architecture and Evolution of Transcriptional Elements That Drive Gene Coexpression
    Science, Vol. 317, No. 5844. (14 September 2007), pp. 1557-1560.
    by Christopher D Brown, David S Johnson, Arend Sidow
    posted to evolution expression tf by djkt on 2007-09-15 16:52:18 as ** along with 9 people and 2 groups emptyhb dpollard joepickrell zwang Garamonfok Stew mimulus_99 maximilianh cisevol EisenLab cis-regulatory-evolution
  • Detection of eQTL modules mediated by activity levels of transcription factors
    Bioinformatics, Vol. 23, No. 17. (1 September 2007), pp. 2290-2297.
    by Wei Sun, Tianwei Yu, Ker-Chau Li
    posted to expression qtl by djkt on 2007-09-11 16:48:26 as ** along with 1 person jo_davies
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