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djkt library [445 articles]

最近 djkt さんのライブラリ (優先度順).
  • No effect of recombination on the efficacy of natural selection in primates
    Genome Res. (16 January 2008), gr.071548.107.
    by Kevin L Bullaughey, Molly Przeworski, Graham Coop
    posted to primates recombination selection by djkt on 2008-01-18 01:41:08 as ***
  • Viral Evolution in the Genomic Age
    PLoS Biology, Vol. 5, No. 10. (1 October 2007), e278.
    by Edward C Holmes
    posted to acceleration ecology evolution phylogenetics virus by djkt on 2007-10-02 20:25:08 as *** along with 3 people dayjm dullhunk zwang
  • Deletion of Ultraconserved Elements Yields Viable Mice
    PLoS Biology, Vol. 5, No. 9. (1 September 2007), e234.
    by Nadav Ahituv, Yiwen Zhu, Axel Visel, Amy Holt, Veena Afzal, Len A Pennacchio, Edward M Rubin
    posted to conservation development expression rodents by djkt on 2007-09-05 17:57:49 as *** along with 7 people and 3 groups balicea dchughes cwbrown lp2 cabbagezs Stew gjuggler EisenLab G4ID Genetics-of-Gambling
  • Human Genome Ultraconserved Elements Are Ultraselected
    Science, Vol. 317, No. 5840. (17 August 2007), 915.
    by Sol Katzman, Andrew D Kern, Gill Bejerano, Ginger Fewell, Lucinda Fulton, Richard K Wilson, Sofie R Salama, David Haussler
    posted to conservation selection by djkt on 2007-08-20 16:42:57 as *** along with 8 people and 1 group aprasad balicea lp2 cabbagezs cisevol Minty fpattyn gjuggler cis-regulatory-evolution
  • Identification and Characterization of Cell Type–Specific and Ubiquitous Chromatin Regulatory Structures in the Human Genome
    posted to chromatin by djkt on 2007-08-18 00:01:07 as ***
  • Cis- and Trans-Acting Elements Regulate the Mouse Psmb9 Meiotic Recombination Hotspot
    posted to recombination rodents by djkt on 2007-06-22 19:48:45 as ***
  • New Approach for Using Genome Scans to Detect Recent Positive Selection in the Human Genome
    posted to acceleration evolution selection snps by djkt on 2007-06-19 21:04:09 as ***
  • Identification of the Imprinted KLF14 Transcription Factor Undergoing Human-Specific Accelerated Evolution
    posted to acceleration tf by djkt on 2007-05-06 06:56:47 as ***
  • Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates
    Genome Res., Vol. 17, No. 5. (1 May 2007), pp. 545-555.
    by Hiroshi Kikuta, Mary Laplante, Pavla Navratilova, Anna Z Komisarczuk, Par G Engstrom, David Fredman, Altuna Akalin, Mario Caccamo, Ian Sealy, Kerstin Howe, Julien Ghislain, Guillaume Pezeron, Philippe Mourrain, Staale Ellingsen, Andrew C Oates, Christine Thisse, Bernard Thisse, Isabelle Foucher, Birgit Adolf, Andrea Geling, Boris Lenhard, Thomas S Becker
    posted to evolution msa by djkt on 2007-05-03 19:30:18 as *** along with 3 people and 3 groups boudinot dchughes maximilianh Bioinformatics G4ID Genetics-of-Gambling
  • Evolutionary and Biomedical Insights from the Rhesus Macaque Genome
    Science, Vol. 316, No. 5822. (13 April 2007), pp. 222-234.
    by Rhesus, Richard A Gibbs, Jeffrey Rogers, Michael G Katze, Roger Bumgarner, George M Weinstock, Elaine R Mardis, Karin A Remington, Robert L Strausberg, Craig J Venter, Richard K Wilson, Mark A Batzer, Carlos D Bustamante, Evan E Eichler, Matthew W Hahn, Ross C Hardison, Kateryna D Makova, Webb Miller, Aleksandar Milosavljevic, Robert E Palermo, Adam Siepel, James M Sikela, Tony Attaway, Stephanie Bell, Kelly E Bernard, Christian J Buhay, Mimi N Chandrabose, Marvin Dao, Clay Davis, Kimberly D Delehaunty, Yan Ding, Huyen H Dinh, Shannon Dugan-Rocha, Lucinda A Fulton, Ramatu A Gabisi, Toni T Garner, Jennifer Godfrey, Alicia C Hawes, Judith Hernandez, Sandra Hines, Michael Holder, Jennifer Hume, Shalini N Jhangiani, Vandita Joshi, Ziad M Khan, Ewen F Kirkness, Andrew Cree, Gerald R Fowler, Sandra Lee, Lora R Lewis, Zhangwan Li, Yih-Shin Liu, Stephanie M Moore, Donna Muzny, Lynne V Nazareth, Dinh N Ngo, Geoffrey O Okwuonu, Grace Pai, David Parker, Heidie A Paul, Cynthia Pfannkoch, Craig S Pohl, Yu-Hui Rogers, San J Ruiz, Aniko Sabo, Jireh Santibanez, Brian W Schneider, Scott M Smith, Erica Sodergren, Amanda F Svatek, Teresa R Utterback, Selina Vattathil, Wesley Warren, Courtney S White, Asif T Chinwalla, Yucheng Feng, Aaron L Halpern, Ladeana W Hillier, Xiaoqiu Huang, Pat Minx, Joanne O Nelson, Kymberlie H Pepin, Xiang Qin, Granger G Sutton, Eli Venter, Brian P Walenz, John W Wallis, Kim C Worley, Shiaw-Pyng Yang, Steven M Jones, Marco A Marra, Mariano Rocchi, Jacqueline E Schein, Robert Baertsch, Laura Clarke, Miklos Csuros, Jarret Glasscock, Alan R Harris, Paul Havlak, Andrew R Jackson, Huaiyang Jiang, Yue Liu, David N Messina, Yufeng Shen, Henry X Song, Todd Wylie, Lan Zhang, Ewan Birney, Kyudong Han, Miriam K Konkel, Jungnam Lee, Arian F Smit, Brygg Ullmer, Hui Wang, Jinchuan Xing, Richard Burhans, Ze Cheng, John E Karro, Jian Ma, Brian Raney, Xinwei She, Michael J Cox, Jeffery P Demuth, Laura J Dumas, Sang-Gook Han, Janet Hopkins, Anis Karimpour-Fard, Young H Kim, Jonathan R Pollack, Tomas Vinar, Charles Addo-Quaye, Jeremiah Degenhardt, Alexandra Denby, Melissa J Hubisz, Amit Indap, Carolin Kosiol, Bruce T Lahn, Heather A Lawson, Alison Marklein, Rasmus Nielsen, Eric J Vallender, Andrew G Clark, Betsy Ferguson, Ryan D Hernandez, Kashif Hirani, Hildegard Kehrer-Sawatzki, Jessica Kolb, Shobha Patil, Ling-Ling Pu, Yanru Ren, David G Smith, David A Wheeler, Ian Schenck, Edward V Ball, Rui Chen, David N Cooper, Belinda Giardine, Fan Hsu, James W Kent, Arthur Lesk, David L Nelson, William E O'Brien, Kay Prufer, Peter D Stenson, James C Wallace, Hui Ke, Xiao-Ming Liu, Peng Wang, Andy P Xiang, Fan Yang, Galt P Barber, David Haussler, Donna Karolchik, Andy D Kern, Robert M Kuhn, Kayla E Smith, Ann S Zwieg
    posted to genome primates by djkt on 2007-04-13 18:30:18 as *** along with 4 people and 4 groups Garamonfok dchughes stajich hpaces Bioinformatics G4ID Genetics-of-Gambling Berkeley Mycology
  • Human-Specific Changes of Genome Structure Detected by Genomic Triangulation
    Science, Vol. 316, No. 5822. (13 April 2007), pp. 235-237.
    by RA Harris, J Rogers, A Milosavljevic
    posted to acceleration primates by djkt on 2007-04-13 18:29:44 as *** along with 1 person and 3 groups dchughes Bioinformatics G4ID Genetics-of-Gambling
  • Genomic sweeping for hypermethylated genes
    Bioinformatics, Vol. 23, No. 3. (1 February 2007), pp. 281-288.
    by Liang Goh, Susan K Murphy, Sayan Muhkerjee, Terrence S Furey
    posted to prediction imprinting by djkt on 2007-02-02 17:44:49 as *** along with 1 person and 1 group mgaldzic CHIP
  • Maximum likelihood inference of imprinting and allele-specific expression from EST data.
    Bioinformatics (11 October 2006)
    by Cathal Seoighe, Victoria Nembaware, Konrad Scheffler
    posted to imprinting by djkt on 2006-12-02 17:02:54 as *** along with 1 person Ayest
  • A supervised hidden Markov model framework for efficiently segmenting tiling array data in transcriptional and ChIP-chip experiments: systematically incorporating validated biological knowledge.
    Bioinformatics (12 October 2006)
    by Jiang Du, Joel S S Rozowsky, Jan O O Korbel, Zhengdong D D Zhang, Thomas E E Royce, Martin H H Schultz, Michael Snyder, Mark Gerstein
    posted to arrays chip-chip hmm prediction by djkt on 2006-12-02 16:49:13 as *** along with 7 people and 2 groups xingxu miguel tuck eckart_bindewald SeungjoonOh blobbybirdman inesdesantiago Bioinformatics UH - Computational Biology
  • Thrice out of Africa: ancient and recent expansions of the honey bee, Apis mellifera.
    Science, Vol. 314, No. 5799. (27 October 2006), pp. 642-645.
    by CW Whitfield, SK Behura, SH Berlocher, AG Clark, JS Johnston, WS Sheppard, DR Smith, AV Suarez, D Weaver, ND Tsutsui
    posted to evolution popgen by djkt on 2006-11-02 19:11:44 as ***
  • Genomic Selective Constraints in Murids
    PLoS Genetics, Vol. preprint, No. 2006. (1 October 2006)
    by Daniel Gaffney, Peter Keightley
    posted to conservation evolution msa rodents selection by djkt on 2006-10-20 20:27:57 as ***
  • Heterogeneous Genomic Molecular Clocks in Primates
    PLoS Genetics, Vol. 2, No. 10. (1 October 2006), e163.
    by Seong-Ho Kim, Navin Elango, Charles Warden, Eric Vigoda, Soojin V Yi
    posted to acceleration molclock primates by djkt on 2006-10-10 18:11:10 as *** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • Time ordering of gene coexpression
    Biostat, Vol. 7, No. 4. (1 October 2006), pp. 569-584.
    by Xiaoyan Leng, Hans-Georg Muller
    posted to arrays clustering expression by djkt on 2006-09-28 18:23:31 as ***
  • Genomic signatures of positive selection in humans and the limits of outlier approaches
    Genome Res., Vol. 16, No. 8. (1 August 2006), pp. 980-989.
    by Joanna L Kelley, Jennifer Madeoy, John C Calhoun, Willie Swanson, Joshua M Akey
    posted to evolution popgen proteins snps by djkt on 2006-08-07 18:18:20 as *** along with 1 person and 1 group hdopazo BioinfoCIPF
  • Copy number variation: New insights in genome diversity
    Genome Res., Vol. 16, No. 8. (1 August 2006), pp. 949-961.
    by Jennifer L Freeman, George H Perry, Lars Feuk, Richard Redon, Steven A Mccarroll, David M Altshuler, Hiroyuki Aburatani, Keith W Jones, Chris Tyler-Smith, Matthew E Hurles, Nigel P Carter, Stephen W Scherer, Charles Lee
    posted to indel popgen review by djkt on 2006-08-07 18:16:31 as *** along with 7 people and 3 groups jasonflannick debasis bpb balicea dchughes jri bioguru2000 Bioinformatics G4ID Genetics-of-Gambling
  • Heterozygous carriers of Nijmegen Breakage Syndrome have a distinct gene expression phenotype
    Genome Res., Vol. 16, No. 8. (1 August 2006), pp. 973-979.
    by Vivian G Cheung, Warren J Ewens
    posted to expression popgen snps by djkt on 2006-08-07 18:15:32 as ***
  • Phylogenetic Signal in the Eukaryotic Tree of Life
    Science, Vol. 321, No. 5885. (4 July 2008), pp. 121-123.
    by Michael J Sanderson
    posted to phylogenetics by djkt on 2008-07-06 19:00:16 as ** along with 4 people gulsacan dchughes marck caseybrown
  • Revealing the architecture of gene regulation: the promise of eQTL studies
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Yoav Gilad, Scott A Rifkin, Jonathan K Pritchard
    posted to qtl expression by djkt on 2008-07-06 18:45:57 as **
  • Asymmetric histone modifications between the original and derived loci of human segmental duplications
    Genome Biology, Vol. 9, No. 7. (2008)
    by Deyou Zheng
    posted to human evolution epigenetics duplication by djkt on 2008-07-03 22:34:14 as **
  • Automated mapping of large-scale chromatin structure in ENCODE.
    Bioinformatics (Oxford, England) (30 June 2008)
    by Heng Lian, William A A Thompson, Robert Thurman, John A A Stamatoyannopoulos, William Stafford S Noble, Charles E E Lawrence
    posted to epigenetics annotation by djkt on 2008-07-03 22:27:20 as **
  • Dissecting direct reprogramming through integrative genomic analysis
    Nature (28 May 2008)
    by Tarjei S Mikkelsen, Jacob Hanna, Xiaolan Zhang, Manching Ku, Marius Wernig, Patrick Schorderet, Bradley E Bernstein, Rudolf Jaenisch, Eric S Lander, Alexander Meissner
    posted to stemcells expression epigenetics by djkt on 2008-07-02 22:32:26 as **
  • Identification and analysis of ancestral hominoid transcriptome inferred from cross-species transcript and processed pseudogene comparisons
    Genome Res., Vol. 18, No. 7. (1 July 2008), pp. 1163-1170.
    by Yao-Ting Huang, Feng-Chi Chen, Chiuan-Jung Chen, Hsin-Liang Chen, Trees-Juen Chuang
    posted to splicing primates expression evolution duplication by djkt on 2008-07-01 19:27:10 as ** along with 1 person dchughes
  • Two strategies for gene regulation by promoter nucleosomes
    Genome Res. (30 April 2008), gr.076059.108.
    by Itay Tirosh, Naama Barkai
    posted to yeast expression chromatin by djkt on 2008-07-01 19:20:59 as ** along with 7 people dchughes aalibes fpattyn vega emptyhb roys nklee
  • Evolutionary dynamics of segmental duplications from human Y-chromosomal euchromatin/heterochromatin transition regions
    Genome Res. (12 June 2008), gr.076711.108.
    by Stefan Kirsch, Claudia Munch, Zhaoshi Jiang, Ze Cheng, Lin Chen, Christiane Batz, Evan E Eichler, Werner Schempp
    posted to evolution duplication by djkt on 2008-07-01 19:18:35 as ** along with 1 person diamantis
  • A diversity profile of the human skin microbiota.
    Genome research (23 May 2008)
    by Elizabeth A A Grice, Heidi H H Kong, Gabriel Renaud, Alice C C Young, , Gerard G G Bouffard, Robert W W Blakesley, Tyra G G Wolfsberg, Maria L L Turner, Julia A A Segre
    posted to microbes metagenomics human by djkt on 2008-07-01 19:18:08 as ** along with 3 people sconlan caseybrown aprasad
  • Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals
    Genome Res., Vol. 18, No. 7. (1 July 2008), pp. 1020-1029.
    by Ines Hellmann, Yuan Mang, Zhiping Gu, Peter Li, de La, Andrew G Clark, Rasmus Nielsen
    posted to sequencing popgen human by djkt on 2008-07-01 19:13:57 as ** along with 4 people serdarbozdag balicea Neeperando APRegier
  • Mouse segmental duplication and copy number variation
    Nature Genetics, Vol. 40, No. 7. (22 May 2008), pp. 909-914.
    by Xinwei She, Ze Cheng, Sebastian Zöllner, Deanna M Church, Evan E Eichler
    posted to variation rodents duplication by djkt on 2008-06-27 20:02:36 as ** along with 1 person dchughes
  • Genomic surveys by methylation-sensitive SNP analysis identify sequence-dependent allele-specific DNA methylation.
    Nature genetics (22 June 2008)
    by Kristi Kerkel, Alexandra Spadola, Eric Yuan, Jolanta Kosek, Le Jiang, Eldad Hod, Kerry Li, Vundavalli V V Murty, Nicole Schupf, Eric Vilain, Mitzi Morris, Fatemeh Haghighi, Benjamin Tycko
    posted to snps popgen epigenetics by djkt on 2008-06-27 20:01:22 as ** along with 2 people oelemento rschulz
  • Combinatorial patterns of histone acetylations and methylations in the human genome
    Nat Genet, Vol. 40, No. 7. (July 2008), pp. 897-903.
    by Zhibin Wang, Chongzhi Zang, Jeffrey A Rosenfeld, Dustin E Schones, Artem Barski, Suresh Cuddapah, Kairong Cui, Tae-Young Roh, Weiqun Peng, Michael Q Zhang, Keji Zhao
    posted to human expression epigenetics by djkt on 2008-06-27 19:58:40 as ** along with 2 people kengg kambiz
  • Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks.
    Nature genetics (15 June 2008)
    by Jun Zhu, Bin Zhang, Erin N N Smith, Becky Drees, Rachel B B Brem, Leonid Kruglyak, Roger E E Bumgarner, Eric E E Schadt
    posted to yeast sysbio by djkt on 2008-06-27 19:56:53 as ** along with 8 people marck roys jyuh realzhang kengg tmmurali ptrobajo maralena
  • Estimating coverage and power for genetic association studies using near-complete variation data
    Nat Genet, Vol. 40, No. 7. (July 2008), pp. 841-843.
    by Tushar R Bhangale, Mark J Rieder, Deborah A Nickerson
    posted to snps power popgen association by djkt on 2008-06-27 19:53:12 as ** along with 2 people jyuh caseybrown
  • Global Mapping of DNA Methylation in Mouse Promoters Reveals Epigenetic Reprogramming of Pluripotency Genes
    PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000116.
    by Cassandra R Farthing, Gabriella Ficz, Ray K Ng, Chun-Fung Chan, Simon Andrews, Wendy Dean, Myriam Hemberger, Wolf Reik
    posted to stemcells epigenetics by djkt on 2008-06-27 19:50:49 as ** along with 1 person Schmidtc
  • Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation
    PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000106.
    by Emily E Hare, Brant K Peterson, Venky N Iyer, Rudolf Meier, Michael B Eisen
    posted to tf fly expression evolution by djkt on 2008-06-27 19:47:07 as ** along with 5 people and 2 groups emptyhb pradiptaray cisevol caseybrown stajich cis-regulatory-evolution Berkeley Mycology
  • Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
    Nature (18 May 2008)
    by Brian T Wilhelm, Samuel Marguerat, Stephen Watt, Falk Schubert, Valerie Wood, Ian Goodhead, Christopher J Penkett, Jane Rogers, Jürg Bähler
    posted to yeast sequencing expression by djkt on 2008-06-25 22:00:06 as ** along with 2 people and 1 group GeeSharpMinor jonathanjacobs Molecular Biology
  • Tuning in to the signals: noncoding sequence conservation in vertebrate genomes
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Greg Elgar, Tanya Vavouri
    posted to conservation by djkt on 2008-06-22 18:10:45 as ** along with 2 people dchughes nklee
  • An Evolutionarily Conserved Sexual Signature in the Primate Brain
    PLoS Genet, Vol. 4, No. 6. (20 June 2008), e1000100.
    by Björn Reinius, Peter Saetre, Jennifer A Leonard, Ran Blekhman, Roxana Merino-Martinez, Yoav Gilad, Elena Jazin
    posted to primates expression divergence by djkt on 2008-06-21 01:17:33 as ** along with 1 person kambiz
  • A Drastic Reduction in the Life Span of Cystatin C L68Q Carriers Due to Life-Style Changes during the Last Two Centuries
    PLoS Genet, Vol. 4, No. 6. (20 June 2008), e1000099.
    by Astridur Palsdottir, Agnar Helgason, Snaebjorn Palsson, Hans T Bjornsson, Birkir T Bragason, Solveig Gretarsdottir, Unnur Thorsteinsdottir, Elias Olafsson, Kari Stefansson
    posted to popgen evolution ecology by djkt on 2008-06-21 01:14:54 as ** along with 1 person Schmidtc
  • Evaluating Statistical Methods Using Plasmode Data Sets in the Age of Massive Public Databases: An Illustration Using False Discovery Rates
    PLoS Genet, Vol. 4, No. 6. (20 June 2008), e1000098.
    by Gary L Gadbury, Qinfang Xiang, Lin Yang, Stephen Barnes, Grier P Page, David B Allison
    posted to mtp by djkt on 2008-06-21 01:13:25 as **
  • Evolution of Mammals and Their Gut Microbes
    Science, Vol. 320, No. 5883. (20 June 2008), pp. 1647-1651.
    by Ruth E Ley, Micah Hamady, Catherine Lozupone, Peter J Turnbaugh, Rob R Ramey, Stephen J Bircher, Michael L Schlegel, Tammy A Tucker, Mark D Schrenzel, Rob Knight, Jeffrey I Gordon
    posted to microbes metagenomics mammals evolution by djkt on 2008-06-20 16:34:54 as ** along with 3 people lp2 dchughes dinnes
  • Proliferating Cells Express mRNAs with Shortened 3' Untranslated Regions and Fewer MicroRNA Target Sites
    Science, Vol. 320, No. 5883. (20 June 2008), pp. 1643-1647.
    by Rickard Sandberg, Joel R Neilson, Arup Sarma, Phillip A Sharp, Christopher B Burge
    posted to rna expression by djkt on 2008-06-20 16:34:08 as ** along with 4 people dchughes emptyhb bootsy lisa1
  • Natural Selection Shapes Genome-Wide Patterns of Copy-Number Polymorphism in Drosophila melanogaster
    Science, Vol. 320, No. 5883. (20 June 2008), pp. 1629-1631.
    by JJ Emerson, Margarida Cardoso-Moreira, Justin O Borevitz, Manyuan Long
    posted to sv selection popgen fly evolution by djkt on 2008-06-20 16:21:25 as ** along with 5 people Neeperando balicea APRegier skumagai dinnes
  • Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis
    Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635.
    by Ari Loytynoja, Nick Goldman
    posted to phylogenetics msa evolution alignment by djkt on 2008-06-20 16:18:18 as ** along with 14 people and 1 group gulsacan Schmidtc bpb zwang aprasad imtechnology marck ArtemPankin gjuggler hpaces dinnes chad_davis jago phoenixzxl Khavkin's lab
  • Pervasive positive selection on duplicated and non duplicated vertebrate protein coding genes
    Genome Res. (18 June 2008), gr.076992.108.
    by Romain Studer, Laurent Duret, Simon Penel, Marc Robinson-Rechavi
    posted to selection proteins duplication by djkt on 2008-06-19 17:39:03 as **
  • From genes to functional classes in the study of biological systems
    BMC Bioinformatics, Vol. 8 (03 April 2007), 114.
    by Fatima Al-Shahrour, Leonardo Arbiza, Hernan Dopazo, Jaime Huerta-Cepas, Pablo Minguez, David Montaner, Joaquin Dopazo
    posted to selection go by djkt on 2008-06-19 17:27:56 as ** along with 5 people and 1 group jfr Sharpshoot ealloza ajw Garamonfok BioinfoCIPF
  • A simple method for calculating the statistical power for detecting a QTL located in a marker interval
    Heredity, Vol. aop, No. current.
    by Z Hu, S Xu
    posted to qtl power by djkt on 2008-06-18 19:04:25 as **
    • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/user/djkt/order/to_read

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