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debatebob library [32 articles]

最近 debatebob さんのライブラリ .
  • RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign
    Nucl. Acids Res. (18 October 2007), gkm842.
    by Eckart Bindewald, Robert Hayes, Yaroslava G Yingling, Wojciech Kasprzak, Bruce A Shapiro
    posted to database nanobiology nanodesign rna structure by debatebob on 2007-11-09 19:26:39 as read
  • Computational design of an RNA hexagonal nanoring and an RNA nanotube.
    Nano Lett, Vol. 7, No. 8. (August 2007), pp. 2328-2334.
    by YG Yingling, BA Shapiro
    posted to design nanobiology rna simulation by debatebob on 2007-08-10 20:34:12 as read
  • Bridging the gap in RNA structure prediction.
    Curr Opin Struct Biol, Vol. 17, No. 2. (April 2007), pp. 157-165.
    by BA Shapiro, YG Yingling, W Kasprzak, E Bindewald
    posted to prediction rna secondary structure by debatebob on 2007-07-26 21:05:06 as read along with 2 people gpalidwor physics
  • Modeling RNA tertiary structure motifs by graph-grammars.
    Nucleic Acids Res, Vol. 35, No. 5. (2007), pp. 1726-1736.
    by K St-Onge, P Thibault, S Hamel, F Major
    posted to building-blocks graph modeling rna structure by debatebob on 2007-07-20 14:56:45 as read along with 1 person eckart_bindewald
  • Elastic properties of ribosomal RNA building blocks: molecular dynamics of the GTPase-associated center rRNA
    Nucl. Acids Res. (6 June 2007), gkm245.
    by Filip Razga, Jaroslav Koca, Ali Mokdad, Jiri Sponer
    posted to dynamics modeling molecular rna simulation by debatebob on 2007-07-05 16:18:48 as read
  • Classification of Nucleic Acid Junctions
    Journal of Molecular Biology, Vol. 263, No. 4. (8 November 1996), pp. 568-581.
    by Cornelis Altona
    posted to classification dna junctions rna by debatebob on 2007-07-02 15:03:51 as read
  • RNA structure: experimental analysis.
    Curr Opin Microbiol (24 May 2007)
    by Brice Felden
    posted to crystallography experiment nanobiology rna structure by debatebob on 2007-06-22 13:49:30 as read along with 3 people and 2 groups marcius penka emidio_capriotti BioinfoCIPF SGU-CIPF
  • Natural selection is not required to explain universal compositional patterns in rRNA secondary structure categories.
    RNA, Vol. 12, No. 1. (January 2006), pp. 1-14.
    by S Smit, M Yarus, R Knight
    posted to composition ribosome rna secondary structure by debatebob on 2007-06-20 16:51:15 as read along with 2 people and 1 group penka i000 YY1
  • Constraining ribosomal RNA conformational space
    Nucleic Acids Research, Vol. 33, No. 16. (2005), pp. 5106-5111.
    by Paola Favaretto, Arjun Bhutkar, Temple F Smith
    posted to mfold prediction ribosome rna secondary structure by debatebob on 2007-06-20 16:30:46 as read
  • Structural biology. Evolution of RNA architecture.
    Science, Vol. 306, No. 5693. (1 October 2004), pp. 62-63.
    by E Westhof, C Massire
    posted to biology evolution rna structure by debatebob on 2007-06-20 16:16:44 as read along with 2 people and 2 groups dayjm marcius BioinfoCIPF SGU-CIPF
  • Coplanar and coaxial orientations of RNA bases and helices
    RNA (5 March 2007), rna.381407.
    by Alain Laederach, Joseph M Chan, Armin Schwartzman, Eric Willgohs, Russ B Altman
    posted to bioinformatics rna statistics structure by debatebob on 2007-06-19 18:58:31 as read
  • The RNA Ontology Consortium: an open invitation to the RNA community.
    RNA, Vol. 12, No. 4. (April 2006), pp. 533-541.
    by NB Leontis, RB Altman, HM Berman, SE Brenner, JW Brown, DR Engelke, SC Harvey, SR Holbrook, F Jossinet, SE Lewis, F Major, DH Mathews, JS Richardson, JR Williamson, E Westhof
    posted to community motifs nanobiology rna structure by debatebob on 2007-06-19 15:27:58 as read along with 2 people and 2 groups reyez marcius BioinfoCIPF SGU-CIPF
  • Analysis of RNA motifs.
    Curr Opin Struct Biol, Vol. 13, No. 3. (June 2003), pp. 300-308.
    by NB Leontis, E Westhof
    posted to motifs rna by debatebob on 2007-06-13 17:18:16 as *** along with 3 people and 2 groups marcius eckart_bindewald arcticrasta BioinfoCIPF SGU-CIPF
  • The interaction networks of structured RNAs
    Nucleic Acids Research, Vol. 34, No. 22. (December 2006), pp. 6587-6604.
    by Lescoute, , Westhof,
    posted to motifs nanobiology network rna by debatebob on 2007-06-13 17:17:46 as read along with 6 people and 2 groups austin reyez jennifermbui marcius jarasch ankur_iitg BioinfoCIPF SGU-CIPF
  • Generating new specific RNA interaction interfaces using C-loops.
    J Am Chem Soc, Vol. 128, No. 50. (20 December 2006), pp. 16131-16137.
    by KA Afonin, NB Leontis
    posted to c-loop rna self-assembly structure by debatebob on 2007-06-13 14:57:08 as ***
  • Recurrent structural RNA motifs, Isostericity Matrices and sequence alignments.
    Nucleic Acids Res, Vol. 33, No. 8. (2005), pp. 2395-2409.
    by A Lescoute, NB Leontis, C Massire, E Westhof
    posted to nanobiology rna sequence structure by debatebob on 2007-06-13 13:04:51 as read along with 3 people and 2 groups reyez marcius jarasch BioinfoCIPF SGU-CIPF
  • Synthetic RNA circuits
    Nat Chem Biol, Vol. 3, No. 1. (January 2007), pp. 23-28.
    by Eric A Davidson, Andrew D Ellington
    posted to nanobiology rna by debatebob on 2007-04-16 18:58:59 as **
  • Controlling RNA self-assembly to form filaments
    Nucleic Acids Research, Vol. 34, No. 5. (2006), pp. 1381-1392.
    by Lorena Nasalean, Stephanie Baudrey, Neocles B Leontis, Luc Jaeger
    posted to nanobiology rna self-assembly by debatebob on 2007-02-23 19:34:40 as ***
  • Folding of branched RNA species
    Biopolymers, Vol. 48, No. 2-3. (1998), pp. 101-112.
    by David MJ Lilley
    posted to structure rna junctions by debatebob on 2007-01-26 18:32:21 as read
  • RNABase: an annotated database of RNA structures.
    Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 502-504.
    by VL Murthy, GD Rose
    posted to structure rna nanobiology database by debatebob on 2007-01-19 19:16:02 as read along with 3 people and 3 groups marcius blackbart condon beta BioinfoCIPF SGU-CIPF
  • The Protein Data Bank.
    Nucleic Acids Res, Vol. 28, No. 1. (1 January 2000), pp. 235-242.
    by HM Berman, J Westbrook, Z Feng, G Gilliland, TN Bhat, H Weissig, IN Shindyalov, PE Bourne
    posted to rna protein database by debatebob on 2007-01-19 18:50:34 as read along with 22 people and 4 groups sebk higueruelo boris_aguilar nigham lillekatt thaliana dimka kuhn jwm vavi bicko itmeson dgront caporaso condon leelarcombe aengisch massivemayhem gisle girschick selrac tji Radiation_Damage Stressosome biomedical-nlp beta
  • SCOR: Structural Classification of RNA, version 2.0.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by M Tamura, DK Hendrix, PS Klosterman, NR Schimmelman, SE Brenner, SR Holbrook
    posted to motifs nanobiology rna by debatebob on 2006-12-20 19:46:07 as read along with 3 people and 3 groups reyez marcius condon beta BioinfoCIPF SGU-CIPF
  • SCOR: a Structural Classification of RNA database.
    Nucleic Acids Res, Vol. 30, No. 1. (1 January 2002), pp. 392-394.
    by PS Klosterman, M Tamura, SR Holbrook, SE Brenner
    posted to motifs nanobiology rna by debatebob on 2006-12-20 19:39:27 as read along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (NC-IUBMB). A nomenclature of junctions and branchpoints in nucleic acids. Recommendations 1994.
    Eur J Biochem, Vol. 230, No. 1. (15 May 1995), pp. 1-2.
    by DM Lilley, RM Clegg, S Diekmann, NC Seeman, E von Kitzing, P Hagerman
    posted to junctions nomenclature rna by debatebob on 2006-12-05 17:58:02 as read
  • Building programmable jigsaw puzzles with RNA.
    Science, Vol. 306, No. 5704. (17 December 2004), pp. 2068-2072.
    by A Chworos, I Severcan, AY Koyfman, P Weinkam, E Oroudjev, HG Hansma, L Jaeger
    posted to nanobiology rna self-assembly tectorna by debatebob on 2006-12-05 17:28:17 as read along with 7 people and 3 groups dna rklancer satsumakenji andyb marcius eckart_bindewald rodney BioinfoCIPF SGU-CIPF Kopelman_Group
  • Modular RNA architecture revealed by computational analysis of existing pseudoknots and ribosomal RNAs.
    Nucleic Acids Res, Vol. 33, No. 4. (2005), pp. 1384-1398.
    by S Pasquali, HH Gan, T Schlick
    posted to nanobiology rna by debatebob on 2006-12-05 17:26:30 as ** along with 1 person and 1 group condon beta
  • RNA structure: the long and the short of it.
    Curr Opin Struct Biol, Vol. 15, No. 3. (June 2005), pp. 302-308.
    by SR Holbrook
    posted to nanobiology review rna by debatebob on 2006-12-05 17:25:58 as read along with 2 people and 2 groups marcius eckart_bindewald BioinfoCIPF SGU-CIPF
  • Construction and 3-D computer modeling of connector arrays with tetragonal to decagonal transition induced by pRNA of phi29 DNA-packaging motor.
    J Nanosci Nanotechnol, Vol. 5, No. 6. (June 2005), pp. 856-863.
    by YY Guo, F Blocker, F Xiao, P Guo
    posted to modeling molecular nanobiology rna by debatebob on 2006-12-05 17:25:05 as read
  • RNA nanotechnology: engineering, assembly and applications in detection, gene delivery and therapy.
    J Nanosci Nanotechnol, Vol. 5, No. 12. (December 2005), pp. 1964-1982.
    by P Guo
    posted to nanobiology review rna by debatebob on 2006-12-05 17:24:34 as read
  • The building blocks and motifs of RNA architecture.
    Curr Opin Struct Biol, Vol. 16, No. 3. (June 2006), pp. 279-287.
    by NB Leontis, A Lescoute, E Westhof
    posted to nanobiology rna by debatebob on 2006-12-05 17:24:08 as read along with 2 people and 2 groups marcius eckart_bindewald BioinfoCIPF SGU-CIPF
  • Nanomanufacturing and characterization modalities for bio-nano-informatics systems.
    J Nanosci Nanotechnol, Vol. 6, No. 4. (April 2006), pp. 875-891.
    by D Ho, D Garcia, CM Ho
    posted to nanobiology by debatebob on 2006-12-05 17:23:45 as **
  • RNA structural motifs: building blocks of a modular biomolecule.
    Q Rev Biophys, Vol. 38, No. 3. (August 2005), pp. 221-243.
    by DK Hendrix, SE Brenner, SR Holbrook
    posted to rna by debatebob on 2006-12-05 17:22:51 as read along with 2 people and 2 groups marcius eckart_bindewald BioinfoCIPF SGU-CIPF
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