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cjeans tfbs [14 articles]

最近 cjeans さんのライブラリに追加された論文の中から タグ tfbs. You can also see everyone's tfbs.
  • Evolution and Selection in Yeast Promoters: Analyzing the Combined Effect of Diverse Transcription Factor Binding Sites
    PLoS Computational Biology, Vol. 4, No. 1. (1 January 2008), e7.
    by Daniela Raijman, Ron Shamir, Amos Tanay
    posted to evolution tfbs transcription by cjeans on 2008-01-14 03:39:27 as **
  • Generic eukaryotic core promoter prediction using structural features of DNA
    Genome Res. (20 December 2007), gr.6991408.
    by Thomas Abeel, Yvan Saeys, Eric Bonnet, Pierre Rouze, Yves Van de Peer
    posted to tfbs by cjeans on 2007-12-21 10:23:00 as ** along with 3 people cabbagezs maximilianh idonaldson
  • Programming gene expression with combinatorial promoters
    Mol Syst Biol, Vol. 3 (13 November 2007)
    by Robert S Cox, Michael G Surette, Michael B Elowitz
    posted to expression regulation tfbs transcription transcriptome by cjeans on 2007-12-20 00:55:19 as ** along with 14 people and 2 groups Retchless tmmurali austin dpollard balicea kengg dbikard margaritis lusk zwang discreteonyxorb cabbagezs Ema tresch EisenLab SynBioSys
  • Reconstruction of ancestral protein interaction networks for the bZIP transcription factors
    Proceedings of the National Academy of Sciences (12 December 2007), 0706339104.
    by John W Pinney, Grigoris D Amoutzias, Magnus Rattray, David L Robertson
    posted to bzip coiled-coil network pin tfbs by cjeans on 2007-12-13 08:12:52 as ** along with 4 people tmmurali grahamc Pao-Yang hplatero
  • Divergence of Transcription Factor Binding Sites Across Related Yeast Species
    Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819.
    by Anthony R Borneman, Tara A Gianoulis, Zhengdong D Zhang, Haiyuan Yu, Joel Rozowsky, Michael R Seringhaus, Lu Y Wang, Mark Gerstein, Michael Snyder
    posted to compare-genomics regulation tfbs by cjeans on 2007-12-12 13:29:42 as ** along with 17 people and 2 groups bryankr aalibes chad_davis dpollard djkt mikaelhuss lusk sujaikumar zwang GustavoLacerda Jporci maximilianh cisevol njcitulike emptyhb nklee anka EisenLab cis-regulatory-evolution
  • Prediction of synergistic transcription factors by function conservation
    Genome Biology, Vol. 8, No. 12. (2007)
    by Zihua Hu, Boyu Hu, James Collins
    posted to prediction tfbs by cjeans on 2007-12-12 10:37:27 as ** along with 3 people and 1 group nklee maximilianh ale cis-regulatory-evolution
  • Determining promoter location based on DNA structure first-principles calculations.
    Genome Biology, Vol. 8, No. 12. (2007)
    by Ramon J Goni, Alberto Perez, David Torrents, Modesto Orozco
    posted to structure tfbs by cjeans on 2007-12-12 10:32:21 as ** along with 2 people nklee maximilianh
  • PLoS ONE: Determining Physical Constraints in Transcriptional Initiation Complexes Using DNA Sequence Analysis
    posted to expression microarray regulation sequence tfbs by cjeans on 2007-11-25 03:00:29 as **
  • A Universal Framework for Regulatory Element Discovery across All Genomes and Data Types.
    Mol Cell, Vol. 28, No. 2. (26 October 2007), pp. 337-350.
    by O Elemento, N Slonim, S Tavazoie
    posted to integrative tfbs by cjeans on 2007-11-10 02:44:58 as ** along with 12 people and 2 groups ana brant cwbrown aswin zwang cabbagezs nklee maximilianh idonaldson sb_journal_club kristen barwil EisenLab Motif Discovery
  • MORPH: Probabilistic Alignment Combined with Hidden Markov Models of cis-Regulatory Modules
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e216.
    by Saurabh Sinha, Xin He
    posted to hmm tfbs by cjeans on 2007-11-10 02:40:52 as ** along with 7 people and 2 groups ana dpollard zwang maximilianh hpaces Ema uwe EisenLab cis-regulatory-evolution
  • PLoS ONE: Fine-Tuning Enhancer Models to Predict Transcriptional Targets across Multiple Genomes
    posted to motif sequence tfbs by cjeans on 2007-11-09 01:03:33 as **
  • A phylogenetic Gibbs sampler that yields centroid solutions for cis regulatory site prediction.
    Bioinformatics (8 May 2007)
    by Lee A A Newberg, William A A Thompson, Sean Conlan, Thomas M M Smith, Lee Ann A McCue, Charles E E Lawrence
    posted to gibbs-sampler tfbs by cjeans on 2007-10-25 03:35:46 as ** along with 3 people and 1 group dpollard sconlan siebert EisenLab
  • A sequential Monte Carlo EM approach to the transcription factor binding site identification problem
    Bioinformatics, Vol. 23, No. 11. (1 June 2007), pp. 1313-1320.
    by Edmund S Jackson, William J Fitzgerald
    posted to tfbs by cjeans on 2007-06-23 04:21:52 as **
  • Position and distance specificity are important determinants of cis-regulatory motifs in addition to evolutionary conservation
    Nucl. Acids Res., Vol. 35, No. 10. (11 May 2007), pp. 3203-3213.
    by Saran Vardhanabhuti, Junwen Wang, Sridhar Hannenhalli
    posted to detect tfbs by cjeans on 2007-06-12 02:24:51 as ** along with 3 people ankur_iitg csdhwang nuin
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