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cjeans ppi [115 articles]

最近 cjeans さんのライブラリに追加された論文の中から タグ ppi. You can also see everyone's ppi.
  • Designed Protein-Protein Association
    Science, Vol. 319, No. 5860. (11 January 2008), pp. 206-209.
    by Dirk Grueninger, Nora Treiber, Mathias O Ziegler, Jochen W Koetter, Monika-Sarah Schulze, Georg E Schulz
    posted to design interface ppi by cjeans on 2008-01-23 06:48:23 as ** along with 5 people and 1 group zwang cactus biomcgary sobolevnrm higueruelo baker-group
  • Micromechanical properties of keratin intermediate filament networks
    Proceedings of the National Academy of Sciences (16 January 2008), 0710728105.
    by Sivaraj Sivaramakrishnan, James V Degiulio, Laszlo Lorand, Robert D Goldman, Karen M Ridge
    posted to experiment network ppi by cjeans on 2008-01-17 09:48:40 as **
  • The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplication
    Proceedings of the National Academy of Sciences (16 January 2008), 0707293105.
    by Aviva Presser, Michael B Elowitz, Manolis Kellis, Roy Kishony
    posted to duplication evolution module network pin ppi by cjeans on 2008-01-17 08:39:26 as ** along with 3 people zwang roys phoenixzxl
  • High-confidence prediction of global interactomes based on genome-wide coevolutionary networks
    Proceedings of the National Academy of Sciences (16 January 2008), 0709671105.
    by David Juan, Florencio Pazos, Alfonso Valencia
    posted to coevolution evolution mirrortree pin ppi profile by cjeans on 2008-01-17 08:07:50 as ** along with 12 people and 1 group tmmurali brant balicea sebastien_vigneau bluto aconesa Katje roys friendpine huali mdstobbe paolomarcatili microbiology_nijmegen
  • Where Have All the Interactions Gone? Estimating the Coverage of Two-Hybrid Protein Interaction Maps
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e214.
    by Hailiang Huang, Bruno M Jedynak, Joel S Bader
    posted to network pin ppi by cjeans on 2008-01-11 06:05:30 as ** along with 4 people jyuh chad_davis zwang Ema
  • Protein-protein interaction networks and biology—what's the connection?
    Nature Biotechnology, Vol. 26, No. 1., pp. 69-72.
    by Luke Hakes, John W Pinney, David L Robertson, Simon C Lovell
    posted to network ppi by cjeans on 2008-01-09 13:26:39 as ** along with 15 people and 1 group Yanno jyuh tmmurali jfr balicea dullhunk neils mikaelhuss nedwards biehl shikin mclarenv Yumyai paolomarcatili zdai GeneGo
  • Multiple knockout analysis of genetic robustness in the yeast metabolic network
    Nature Genetics, Vol. 38, No. 9. (29 August 2006), pp. 993-998.
    by David Deutscher, Isaac Meilijson, Martin Kupiec, Eytan Ruppin
    posted to genetics phenotype pin ppi by cjeans on 2007-12-30 03:02:22 as ** along with 7 people and 1 group tmmurali koller raiyar patrycja_missiuro edwardmorrissey hryk jiny steinmetzlab
  • Gene essentiality and the topology of protein interaction networks
    posted to network phenotype pin ppi by cjeans on 2007-12-30 02:58:55 as **
  • A Single Determinant Dominates the Rate of Yeast Protein Evolution
    Molecular Biology and Evolution, Vol. 23, No. 2. (20 February 2006), pp. 327-337.
    by Allan D Drummond, Alpan Raval, Claus O Wilke
    posted to evolution pin ppi by cjeans on 2007-12-25 12:34:18 as **
  • The origin of protein interactions and allostery in colocalization
    Nature, Vol. 450, No. 7172. (12 December 2007), pp. 983-990.
    by John Kuriyan, David Eisenberg
    posted to ppi protein structure by cjeans on 2007-12-18 13:40:36 as ** along with 4 people and 1 group sobolevnrm mingzhi phoenixzxl higueruelo baker-group
  • Reaching for high-hanging fruit in drug discovery at protein–protein interfaces
    Nature, Vol. 450, No. 7172. (12 December 2007), pp. 1001-1009.
    by James A Wells, Christopher L Mcclendon
    posted to interface ppi protein proteome by cjeans on 2007-12-18 13:37:05 as ** along with 5 people chgjb phoenixzxl higueruelo bicko jyuh
  • Molecular Principles of the Interactions of Disordered Proteins
    Journal of Molecular Biology, Vol. 372, No. 2. (14 September 2007), pp. 549-561.
    by Balint Meszaros, Peter Tompa, Istvan Simon, Zsuzsanna Dosztanyi
    posted to interaction ppi by cjeans on 2007-12-18 12:04:42 as ** along with 3 people jyuh higueruelo allmensch
  • A skeleton of the human protein interactome.
    Cell, Vol. 122, No. 6. (23 September 2005), pp. 830-832.
    by A Ghavidel, G Cagney, A Emili
    posted to human interaction pin ppi by cjeans on 2007-12-12 13:29:16 as ** along with 2 people eukfn Evangelia
  • A systematic interaction map of validated kinase inhibitors with Ser/Thr kinases
    Proceedings of the National Academy of Sciences (11 December 2007), 0708800104.
    by Oleg Fedorov, Brian Marsden, Vanda Pogacic, Peter Rellos, Susanne Muller, Alex N Bullock, Juerg Schwaller, Michael Sundstrom, Stefan Knapp
    posted to pin ppi by cjeans on 2007-12-12 10:25:20 as ** along with 3 people tmmurali renatomilani jyuh
  • Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
    Nature (22 March 2006)
    by Nevan J Krogan, Gerard Cagney, Haiyuan Yu, Gouqing Zhong, Xinghua Guo, Alexandr Ignatchenko, Joyce Li, Shuye Pu, Nira Datta, Aaron P Tikuisis, Thanuja Punna, Josã© M Peregrã­n-Alvarez, Michael Shales, Xin Zhang, Michael Davey, Mark D Robinson, Alberto Paccanaro, James E Bray, Anthony Sheung, Bryan Beattie, Dawn P Richards, Veronica Canadien, Atanas Lalev, Frank Mena, Peter Wong, Andrei Starostine, Myra M Canete, James Vlasblom, Samuel Wu, Chris Orsi, Sean R Collins, Shamanta Chandran, Robin Haw, Jennifer J Rilstone, Kiran Gandi, Natalie J Thompson, Gabe Musso, Peter St Onge, Shaun Ghanny, Mandy HY Lam, Gareth Butland, Amin M Altaf-Ul, Shigehiko Kanaya, Ali Shilatifard, Erin O'Shea, Jonathan S Weissman, James C Ingles, Timothy R Hughes, John Parkinson, Mark Gerstein, Shoshana J Wodak, Andrew Emili, Jack F Greenblatt
    posted to network pin ppi by cjeans on 2007-12-11 01:24:23 as ** along with 21 people and 4 groups Borelli lfriedl chad_davis balajis marcius tardigrade nirfriedman balabu j3xucite nickluscombe koller raiyar nicoleq Evangelia csaveanu frohike carlk hplatero chasmand mapplab ethkim kdl EBI-regulation BioinfoCIPF SGU-CIPF
  • Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets
    Nature Genetics, Vol. 38, No. 3. (24 February 2006), pp. 285-293.
    by TKB Gandhi, Jun Zhong, Suresh Mathivanan, L Karthick, KN Chandrika, Sujatha S Mohan, Salil Sharma, Stefan Pinkert, Shilpa Nagaraju, Balamurugan Periaswamy, Goparani Mishra, Kannabiran Nandakumar, Beiyi Shen, Nandan Deshpande, Rashmi Nayak, Malabika Sarker, Jef D Boeke, Giovanni Parmigiani, Jörg Schultz, Joel S Bader, Akhilesh Pandey
    posted to evolution pin ppi by cjeans on 2007-12-10 10:24:26 as ** along with 11 people and 2 groups balajis indigoviolet tny spavey TheresaNiederberger alwinpremanand dejori Pao-Yang pmendes carlk cerca EisenLab FAB-lab
  • The Modular Organization of Domain Structures: Insights into Protein–Protein Binding
    PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e239.
    by Del, Pablo Carbonell
    posted to domain ppi structure by cjeans on 2007-12-08 06:40:10 as ** along with 9 people bicko chad_davis choonpeng grahamc zwang niallhaslam biehl marti carlk
  • Localizing frustration in native proteins and protein assemblies
    Proceedings of the National Academy of Sciences (5 December 2007), 0709915104.
    by Diego U Ferreiro, Joseph A Hegler, Elizabeth A Komives, Peter G Wolynes
    posted to interface ppi structure by cjeans on 2007-12-06 23:43:25 as ** along with 2 people and 1 group cactus sobolevnrm baker-group
  • Deciphering Protein–Protein Interactions. Part I. Experimental Techniques and Databases
    PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e42.
    by Benjamin A Shoemaker, Anna R Panchenko
    posted to ppi by cjeans on 2007-12-03 03:55:59 as ** along with 8 people jyuh aalibes bicko jfr chad_davis iris_2001 lpfernandes groepl
  • Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners
    PLoS Computational Biology, Vol. 3, No. 4. (1 April 2007), e43.
    by Benjamin A Shoemaker, Anna R Panchenko
    posted to ppi by cjeans on 2007-12-03 03:55:51 as ** along with 14 people Yanno jyuh aalibes bicko jfr chad_davis iris_2001 zwang lpfernandes groepl carlk Evangelia higueruelo phoenixzxl
  • Protein-protein interaction: a genetic selection for compensating mutations at the barnase-barstar interface.
    Proc Natl Acad Sci U S A, Vol. 93, No. 6. (19 March 1996), pp. 2343-2347.
    by M Jucovic, RW Hartley
    posted to interface ppi by cjeans on 2007-12-02 11:50:46 as ** along with 1 person ras
  • Soft protein-protein docking in internal coordinates.
    Protein Sci, Vol. 11, No. 2. (February 2002), pp. 280-291.
    by J Fernández-Recio, M Totrov, R Abagyan
    posted to docking ppi by cjeans on 2007-11-30 07:12:54 as ** along with 5 people and 2 groups barry bicko bluvsh1 selrac wilbur structural_bioinformatics Bioinformatics
  • Protein-protein interfaces: Analysis of amino acid conservation in homodimers
    Proteins: Structure, Function, and Genetics, Vol. 42, No. 1. (2001), pp. 108-124.
    by William SJ Valdar, Janet M Thornton
    posted to interface ppi by cjeans on 2007-11-30 07:08:34 as **
  • Studies of protein-protein interfaces: A statistical analysis of the hydrophobic effect -- TSAI et al. 6 (1): 53 -- Protein Science
    posted to interface ppi by cjeans on 2007-11-30 07:06:21 as **
  • Improved prediction of protein-protein binding sites using a support vector machines approach
    Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1487-1494.
    by James R Bradford, David R Westhead
    posted to interface ppi by cjeans on 2007-11-30 06:55:07 as ** along with 8 people bicko sriram_s chaleil ameetsoni Evangelia phoenixzxl marti OriginalLurch
  • Topological structure analysis of the protein-protein interaction network in budding yeast
    Nucl. Acids Res., Vol. 31, No. 9. (1 May 2003), pp. 2443-2450.
    by Dongbo Bu, Yi Zhao, Lun Cai, Hong Xue, Xiaopeng Zhu, Hongchao Lu, Jingfen Zhang, Shiwei Sun, Lunjiang Ling, Nan Zhang, Guojie Li, Runsheng Chen
    posted to network ppi topology by cjeans on 2007-11-30 06:52:35 as ** along with 5 people and 1 group lfriedl iris_2001 carlk minostro ellakat kdl
  • Conserved network motifs allow protein-protein interaction prediction
    Bioinformatics, Vol. 20, No. 18., 3346.
    by Istvan Albert, Reka Albert
    posted to motif network ppi by cjeans on 2007-11-30 06:49:23 as ** along with 2 people Evangelia iris_2001
  • POINT: a database for the prediction of protein-protein interactions based on the orthologous interactome
    Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 3273-3276.
    by Tao-Wei Huang, An-Chi Tien, Wen-Shien Huang, Yuan-Chii G Lee, Chin-Lin Peng, Huei-Hun Tseng, Cheng-Yan Kao, Chi-Ying F Huang
    posted to evolution ortholog ppi by cjeans on 2007-11-30 06:47:59 as ** along with 1 person cerca
  • Interaction generality, a measurement to assess the reliability of a protein-protein interaction
    Nucl. Acids Res., Vol. 30, No. 5. (1 March 2002), pp. 1163-1168.
    by Rintaro Saito, Harukazu Suzuki, Yoshihide Hayashizaki
    posted to assessment ppi by cjeans on 2007-11-30 01:18:52 as ** along with 4 people and 1 group lfriedl bluto iris_2001 ethkim kdl
  • Prediction of potential protein-protein interaction sites from amino acid sequence : Identification of a fibrin polymerization site
    FEBS Letters, Vol. 385, No. 1-2. (29 April 1996), pp. 81-86.
    by Manjunatha R Kini, Herbert J Evans
    posted to ppi sequence by cjeans on 2007-11-30 01:17:49 as **
  • Development of unified statistical potentials describing protein-protein interactions.
    Biophys J, Vol. 84, No. 3. (March 2003), pp. 1895-1901.
    by H Lu, L Lu, J Skolnick
    posted to docking ppi by cjeans on 2007-11-30 01:17:07 as ** along with 7 people bicko mdimmic chad_davis selrac iris_2001 wilbur kgutwin
  • Protein docking using a genetic algorithm
    Proteins: Structure, Function, and Genetics, Vol. 44, No. 1. (8 May 2001), pp. 44-56.
    by Eleanor J Gardiner, Peter Willett, Peter J Artymiuk
    posted to docking ppi by cjeans on 2007-11-30 01:14:57 as ** along with 5 people and 1 group dgruiz rmj001 bicko yongzhao timgeppert TSRI_MGL
  • Evolutionary predictions of binding surfaces and interactions
    Current Opinion in Structural Biology, Vol. 12, No. 1. (1 February 2002), pp. 21-27.
    by Olivier Lichtarge, Mathew E Sowa
    posted to evolution interface ppi by cjeans on 2007-11-30 01:14:28 as ** along with 1 person Pao-Yang
  • Predicting protein-protein interactions using signature products
    Bioinformatics, Vol. 21, No. 2., 218.
    by Shawn Martin, Diana Roe, Jean-Loup Faulon
    posted to integrative ppi by cjeans on 2007-11-30 01:09:08 as ** along with 3 people mdimmic ziquje carlk
  • Information assessment on predicting protein-protein interactions.
    BMC Bioinformatics, Vol. 5 (18 October 2004)
    by N Lin, B Wu, R Jansen, M Gerstein, H Zhao
    posted to integrative ppi by cjeans on 2007-11-30 01:07:01 as ** along with 5 people and 2 groups okarsligil lfriedl wnpx eukfn iris_2001 kdl Bioinformatics
  • Prediction of protein-protein interactions based on surface patch comparison
    PROTEOMICS, Vol. 4, No. 6. (2004), pp. 1727-1736.
    by Oliviero Carugo, Giacomo Franzot
    posted to interface ppi by cjeans on 2007-11-30 01:06:26 as ** along with 1 person Evangelia
  • A Continuum Model for Protein-Protein Interactions: Application to the Docking Problem
    Journal of Molecular Biology, Vol. 250, No. 2. (7 July 1995), pp. 258-275.
    by Richard M Jackson, Michael J Sternberg
    posted to docking ppi by cjeans on 2007-11-30 01:05:54 as ** along with 1 person and 1 group sobolevnrm baker-group
  • Identification of Protein-Protein Interaction Sites from Docking Energy Landscapes
    Journal of Molecular Biology, Vol. 335, No. 3. (16 January 2004), pp. 843-865.
    by Juan Fernandez-Recio, Maxim Totrov, Ruben Abagyan
    posted to docking interface ppi by cjeans on 2007-11-30 01:04:49 as ** along with 1 person bicko
  • Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces
    Bioinformatics, Vol. 21, No. 12. (15 June 2005), pp. 2850-2855.
    by Selim S Aytuna, Attila Gursoy, Ozlem Keskin
    posted to interface ppi by cjeans on 2007-11-30 01:03:13 as ** along with 5 people selrac higueruelo bicko chad_davis kgutwin
  • Electrostatic aspects of protein-protein interactions
    Current Opinion in Structural Biology, Vol. 10, No. 2. (1 April 2000), pp. 153-159.
    by Felix B Sheinerman, Raquel Norel, Barry Honig
    posted to interface ppi by cjeans on 2007-11-30 01:01:54 as ** along with 2 people carlescorbi mikaellund
  • A simple physical model for binding energy hot spots in protein-protein complexes.
    Proc Natl Acad Sci U S A, Vol. 99, No. 22. (29 October 2002), pp. 14116-14121.
    by T Kortemme, D Baker
    posted to interaction interface ppi structure by cjeans on 2007-11-30 01:00:01 as ** along with 5 people and 1 group lna jwm bicko hmk skoddet Nielsen group
  • Analysis of protein-protein interaction sites using surface patches.
    J Mol Biol, Vol. 272, No. 1. (12 September 1997), pp. 121-132.
    by S Jones, JM Thornton
    posted to interface ppi by cjeans on 2007-11-30 00:59:18 as ** along with 1 person chad_davis
  • Protein interaction networks from yeast to human.
    Curr Opin Struct Biol, Vol. 14, No. 3. (June 2004), pp. 292-299.
    by P Bork, LJ Jensen, C von Mering, AK Ramani, I Lee, EM Marcotte
    posted to evolution pin ppi by cjeans on 2007-11-30 00:58:27 as ** along with 7 people kuhn koller grahamc lpfernandes selrac Evangelia larsjuhljensen
  • Relating whole-genome expression data with protein-protein interactions.
    Genome Res, Vol. 12, No. 1. (January 2002), pp. 37-46.
    by R Jansen, D Greenbaum, M Gerstein
    posted to expression ppi by cjeans on 2007-11-29 10:05:58 as ** along with 8 people gurkanbebek gespim grahamc iris_2001 kintoki paolomarcatili nedwards carlk
  • Automated structure-based prediction of functional sites in proteins: applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking.
    J Mol Biol, Vol. 311, No. 2. (10 August 2001), pp. 395-408.
    by P Aloy, E Querol, FX Aviles, MJ Sternberg
    posted to function ppi residues by cjeans on 2007-11-29 10:03:43 as ** along with 5 people kaarsinogen chrn bicko chad_davis sriram_s
  • Gaining confidence in high-throughput protein interaction networks.
    Nat Biotechnol, Vol. 22, No. 1. (January 2004), pp. 78-85.
    by JS Bader, A Chaudhuri, JM Rothberg, J Chant
    posted to ppi by cjeans on 2007-11-29 10:00:47 as ** along with 9 people and 1 group dragonrez lfriedl gurkanbebek raiyar iris_2001 patrycjam patrycja_missiuro Evangelia ellakat kdl
  • Multimeric threading-based prediction of protein-protein interactions on a genomic scale: application to the Saccharomyces cerevisiae proteome.
    Genome Res, Vol. 13, No. 6A. (June 2003), pp. 1146-1154.
    by L Lu, AK Arakaki, H Lu, J Skolnick
    posted to ppi structure by cjeans on 2007-11-29 09:50:22 as ** along with 5 people and 1 group bicko mdimmic lfriedl chad_davis ruvido kdl
  • Distinguishing structural and functional restraints in evolution in order to identify interaction sites.
    J Mol Biol, Vol. 342, No. 5. (1 October 2004), pp. 1487-1504.
    by V Chelliah, L Chen, TL Blundell, SC Lovell
    posted to interface ppi by cjeans on 2007-11-29 09:49:35 as ** along with 8 people and 1 group chrn bicko rabio massivemayhem cat_worth MaggieYe medic0747 zwang structural_bioinformatics
  • An assessment of the uses of homologous interactions
    Bioinformatics (27 November 2007), btm576.
    by Ramazan Saeed, Charlotte Deane
    posted to dataset ppi by cjeans on 2007-11-29 08:51:21 as ** along with 7 people chad_davis grahamc laughcry mingzhi cdeane Pao-Yang samesense
  • Determination of protein function, evolution and interactions by structural genomics
    Current Opinion in Structural Biology, Vol. 11, No. 3. (1 June 2001), pp. 354-363.
    by Sarah A Teichmann, Alexey G Murzin, Cyrus Chothia
    posted to evolution genome ppi structure by cjeans on 2007-11-28 09:47:51 as **
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