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cisevol library [291 articles]

最近 cisevol さんのライブラリ .
  • A-to-I RNA editing alters less-conserved residues of highly conserved coding regions: Implications for dual functions in evolution.
    RNA (New York, N.Y.) (20 June 2008)
    by Yun Yang, Jianning Lv, Bin Gui, Heng Yin, Xiaojie Wu, Yaozhou Zhang, Yongfeng Jin
    posted to rna_editing by cisevol on 2008-07-03 15:30:09 as ** along with 1 group BergmanLab
  • Transgenesis upgrades for Drosophila melanogaster
    Development, Vol. 134, No. 20. (15 October 2007), pp. 3571-3584.
    by Koen J Venken, Hugo J Bellen
    posted to transposon drosophila by cisevol on 2008-07-03 13:58:43 as ** along with 1 person and 1 group emmahe BergmanLab
  • Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation
    PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000106.
    by Emily E Hare, Brant K Peterson, Venky N Iyer, Rudolf Meier, Michael B Eisen
    posted to flies cis-regulatory by cisevol on 2008-06-30 21:50:06 as ** along with 5 people and 2 groups emptyhb pradiptaray caseybrown stajich djkt cis-regulatory-evolution Berkeley Mycology
  • The words of the regulatory code are arranged in a variable manner in highly conserved enhancers.
    Developmental biology (4 April 2008)
    by Sepand Rastegar, Isabell Hess, Thomas Dickmeis, Jean Christophe C Nicod, Raymond Ertzer, Yavor Hadzhiev, Wolf-Gerolf G Thies, Gerd Scherer, Uwe Strähle
    posted to vertebrate cis-regulatory by cisevol on 2008-06-19 22:33:02 as ** along with 2 people and 1 group brant maximilianh cis-regulatory-evolution
  • Precise detection of rearrangement breakpoints in mammalian chromosomes
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Claire Lemaitre, Eric Tannier, Christian Gautier, Marie F Sagot
    posted to rearrangement breakpoints by cisevol on 2008-06-19 10:56:24 as ** along with 1 person and 1 group Neeperando BergmanLab
  • Evolutionary changes in gene regulation from a comparative analysis of multiple Drosophila species.
    Genome informatics. International Conference on Genome Informatics, Vol. 18 (2007), pp. 12-21.
    by L Hu, D Segrè, TF Smith
    posted to rearrangement flies cis-regulatory by cisevol on 2008-06-12 21:57:48 as ** along with 1 person and 1 group pradiptaray cis-regulatory-evolution
  • CSMET: Comparative Genomic Motif Detection via Multi-Resolution Phylogenetic Shadowing
    PLoS Comput Biol, Vol. 4, No. 6. (6 June 2008), e1000090.
    by Pradipta Ray, Suyash Shringarpure, Mladen Kolar, Eric P Xing
    posted to model flies cis-regulatory by cisevol on 2008-06-07 21:39:11 as ** along with 3 people and 1 group Ema Stew djkt cis-regulatory-evolution
  • Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA
    BMC Genomics, Vol. 9 (17 May 2008), 226.
    by Nalini Polavarapu, Leonardo Marino-Ramirez, David Landsman, John F Mcdonald, King I Jordan
    posted to transposon mammals cis-regulatory by cisevol on 2008-05-29 22:08:57 as ** along with 1 person and 2 groups pradiptaray cis-regulatory-evolution BergmanLab
  • Promoter elements associated with RNA Pol II stalling in the Drosophila embryo
    Proceedings of the National Academy of Sciences (27 May 2008), 0802406105.
    by David A Hendrix, Joung-Woo Hong, Julia Zeitlinger, Daniel S Rokhsar, Michael S Levine
    posted to promoter drosophila by cisevol on 2008-05-29 21:08:32 as ** along with 1 person and 1 group oelemento BergmanLab
  • Regulatory divergence modifies limb length between mammals
    Genes Dev., Vol. 22, No. 2. (15 January 2008), pp. 141-151.
    by Chris J Cretekos, Ying Wang, Eric D Green, Nisc, James F Martin, John J Rasweiler, Richard R Behringer
    posted to mammals cis-regulatory by cisevol on 2008-05-29 10:25:38 as ** along with 1 person and 1 group dchughes cis-regulatory-evolution
  • Co-evolution of transcription factors and their targets depends on mode of regulation
    Genome Biology, Vol. 7 (19 July 2006), R62.
    by Ruth Hershberg, Hanah Margalit
    posted to transcription_factor cis-regulatory bacteria by cisevol on 2008-05-26 11:18:21 as ** along with 4 people and 2 groups PetrovLab indigoviolet dpollard cjeans cis-regulatory-evolution EisenLab
  • Evolutionary origin of regulatory regions of retrogenes in Drosophila
    BMC Genomics, Vol. 9 (22 May 2008), 241.
    by Yongsheng Bai, Claudio Casola, Esther Betran
    posted to transposon flies duplication cis-regulatory by cisevol on 2008-05-25 09:18:46 as ** along with 1 group cis-regulatory-evolution
  • Resurrection of DNA function in vivo from an extinct genome.
    PLoS ONE, Vol. 3, No. 5. (2008)
    by AJ Pask, RR Behringer, MB Renfree
    posted to mammals cis-regulatory ancient_dna by cisevol on 2008-05-23 19:08:52 as ** along with 1 group cis-regulatory-evolution
  • Microevolutionary divergence pattern of the segmentation gene hunchback in Drosophila.
    Mol Biol Evol, Vol. 15, No. 11. (November 1998), pp. 1403-1411.
    by D Tautz, L Nigro
    posted to variation flies cis-regulatory by cisevol on 2008-05-23 19:03:28 as ** along with 2 people and 1 group balicea emptyhb cis-regulatory-evolution
  • A comparison of homologous developmental genes from Drosophila and Tribolium reveals major differences in length and trinucleotide repeat content.
    Journal of molecular evolution, Vol. 49, No. 5. (November 1999), pp. 558-566.
    by KJ Schmid, D Tautz
    posted to transcription_factor insects flies beetles by cisevol on 2008-05-22 14:22:20 as ** along with 1 group cis-regulatory-evolution
  • A test for adaptive change in DNA sequences controlling transcription.
    Proceedings. Biological sciences / The Royal Society, Vol. 261, No. 1361. (22 August 1995), pp. 203-207.
    by DL Jenkins, CA Ortori, JF Brookfield
    posted to variation flies cis-regulatory by cisevol on 2008-05-22 14:18:25 as ** along with 1 group cis-regulatory-evolution
  • Evidence against the energetic cost hypothesis for the short introns in highly expressed genes
    BMC Evolutionary Biology, Vol. 8 (20 May 2008), 154.
    by Yi-Fei Huang, Deng-Ke Niu
    posted to transcription introns cost by cisevol on 2008-05-20 19:19:42 as ** along with 1 person and 2 groups stajich Berkeley Mycology BergmanLab
  • Expected Gene Order Distances and Model Selection in Bacteria.
    Bioinformatics (Oxford, England) (1 April 2008)
    by Daniel Dalevi, Niklas Eriksen
    posted to gene_order bacteria by cisevol on 2008-05-19 19:23:21 as ** along with 3 people and 1 group sharpton Ema maximilianh BergmanLab
  • Fast Evolution of Core Promoters in Primate Genomes
    Mol Biol Evol, Vol. 25, No. 6. (1 June 2008), pp. 1239-1244.
    by Han Liang, Yeong-Shin Lin, Wen-Hsiung Li
    posted to mammals cis-regulatory by cisevol on 2008-05-18 14:41:37 as ** along with 2 people and 1 group aprasad Stew cis-regulatory-evolution
  • Retrotransposition as a Source of New Promoters.
    Mol Biol Evol (25 March 2008)
    by Kohji Okamura, Kenta Nakai
    posted to mammals cis-regulatory by cisevol on 2008-05-18 14:40:54 as ** along with 1 person and 1 group rschulz cis-regulatory-evolution
  • Report of a chimeric origin of transposable elements in a bovine-coding gene.
    Genetics and molecular research : GMR, Vol. 7, No. 1. (2008), pp. 107-116.
    by LM Almeida, ME Amaral, IT Silva, WA Silva, PK Riggs, CM Carareto
    posted to transposon mammals by cisevol on 2008-05-16 15:24:54 as ** along with 1 group BergmanLab
  • Transcription of two human genes from a bidirectional endogenous retrovirus promoter.
    Gene (7 November 2005)
    by Catherine A A Dunn, Mark T T Romanish, Leanne E E Gutierrez, Louie N N van de Lagemaat, Dixie L L Mager
    posted to transposon mammals cis-regulatory by cisevol on 2008-05-16 15:21:46 as ** along with 1 person and 4 groups dchughes cis-regulatory-evolution BergmanLab G4ID Genetics-of-Gambling
  • Retrotransposon Tf1 is targeted to Pol II promoters by transcription activators.
    Molecular cell, Vol. 30, No. 1. (11 April 2008), pp. 98-107.
    by YE Leem, TL Ripmaster, FD Kelly, H Ebina, ME Heincelman, K Zhang, SI Grewal, CS Hoffman, HL Levin
    posted to fungi expression cis-regulatory by cisevol on 2008-05-10 09:06:08 as ** along with 2 groups cis-regulatory-evolution BergmanLab
  • Studying the functional conservation of cis-regulatory modules and their transcriptional output
    BMC Bioinformatics, Vol. 9 (29 April 2008), 220.
    by Denis C Bauer, Timothy L Bailey
    posted to model drosophila cis-regulatory by cisevol on 2008-04-30 19:02:30 as ** along with 2 people and 1 group xili03 maximilianh cis-regulatory-evolution
  • Transposable element fragments in protein-coding regions and their contributions to human functional proteins
    Gene, Vol. 401, No. 1-2. (15 October 2007), pp. 165-171.
    by Ming Wu, Li Li, Zhirong Sun
    posted to transposon mammals by cisevol on 2008-04-26 19:51:20 as ** along with 4 people and 3 groups dchughes N0131826 idonaldson paulcartwright G4ID Genetics-of-Gambling BergmanLab
  • Possible involvement of SINEs in mammalian-specific brain formation.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 11. (18 March 2008), pp. 4220-4225.
    by T Sasaki, H Nishihara, M Hirakawa, K Fujimura, M Tanaka, N Kokubo, C Kimura-Yoshida, I Matsuo, K Sumiyama, N Saitou, T Shimogori, N Okada
    posted to transposon mammals cis-regulatory by cisevol on 2008-04-26 19:38:10 as ** along with 1 person and 2 groups FMoncini cis-regulatory-evolution BergmanLab
  • Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting transfer RNAs.
    J Mol Biol, Vol. 158, No. 4. (15 July 1982), pp. 573-597.
    by T Ikemura
    posted to fungi codon_bias by cisevol on 2008-04-25 12:49:50 as ** along with 1 person and 1 group bjorns BergmanLab
  • The Cost of Expression of Escherichia coli lac Operon Proteins Is in the Process, Not in the Products.
    Genetics, Vol. 178, No. 3. (March 2008), pp. 1653-1660.
    by DM Stoebel, AM Dean, DE Dykhuizen
    posted to expression cost bacteria by cisevol on 2008-04-23 19:50:24 as ** along with 1 group BergmanLab
  • Overlapping genes in the human and mouse genomes
    BMC Genomics, Vol. 9 (14 April 2008), 169.
    by Chaitanya R Sanna, Wen-Hsiung Li, Liqing Zhang
    posted to mammals overlapping_gene by cisevol on 2008-04-20 13:34:08 as ** along with 1 group BergmanLab
  • How many human genes can be defined as housekeeping with current expression data?
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Jiang Zhu, Fuhong He, Shuhui Song, Jing Wang, Jun Yu
    posted to mammals overlapping_gene by cisevol on 2008-04-20 13:33:25 as ** along with 2 people jyuh idonaldson
  • Non-random retention of protein-coding overlapping genes in Metazoa
    BMC Genomics, Vol. 9 (16 April 2008), 174.
    by Giulia Solda', Mikita Suyama, Paride Pelucchi, Silvia Boi, Alessandro Guffanti, Ermanno Rizzi, Peer Bork, Maria L Tenchini, Francesca D Ciccarelli
    posted to mammals overlapping_gene by cisevol on 2008-04-20 13:33:08 as ** along with 1 person and 1 group maximilianh BergmanLab
  • ReXSpecies - a tool for the analysis of the evolution of gene regulation across species
    BMC Evolutionary Biology, Vol. 8 (14 April 2008), 111.
    by Stephan Struckmann, Marcos J Arauzo-Bravo, Hans R Schoeler, Rolland A Reinbold, Georg Fuellen
    posted to cis-regulatory model by cisevol on 2008-04-20 13:27:46 as ** along with 1 person and 1 group maximilianh cis-regulatory-evolution
  • Birth and death of gene overlaps in vertebrates
    BMC Evolutionary Biology, Vol. 7 (16 October 2007), 193.
    by Izabela Makalowska, Chiao-Feng Lin, Kristina Hernandez
    posted to mammals overlapping_gene transposon by cisevol on 2008-04-16 13:01:04 as ** along with 1 person and 1 group pradiptaray BergmanLab
  • Local conservation scores without a priori assumptions on neutral substitution rates
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Janis Dingel, Pavol Hanus, Niccolo Leonardi, Joachim Hagenauer, Juergen Zech, Jakob Mueller
    posted to model noncoding by cisevol on 2008-04-13 16:34:31 as ** along with 3 people and 2 groups aprasad maximilianh RamuAnandakrishnan cis-regulatory-evolution BergmanLab
  • [Reconstruction of ancestral regulatory signals along a transcription factor tree]
    Molekuliarnaia biologiia, Vol. 41, No. 5. (t 2007), pp. 918-925.
    by KIu Gorbunov, VA Liubetskiĭĭ
    posted to bacteria cis-regulatory by cisevol on 2008-04-06 08:00:36 as ** along with 1 person and 1 group pradiptaray cis-regulatory-evolution
  • Weak correlation between sequence conservation in promoter regions and in protein-coding regions of human-mouse orthologous gene pairs
    BMC Genomics, Vol. 9 (02 April 2008), 152.
    by Hirokazu Chiba, Riu Yamashita, Kengo Kinoshita, Kenta Nakai
    posted to cis-regulatory mammals by cisevol on 2008-04-04 20:12:38 as ** along with 1 group cis-regulatory-evolution
  • Phylogenetic and genomewide analyses suggest a functional relationship between kayak, the Drosophila fos homolog, and fig, a predicted protein phosphatase 2c nested within a kayak intron.
    Genetics, Vol. 177, No. 3. (November 2007), pp. 1349-1361.
    by SG Hudson, MJ Garrett, JW Carlson, G Micklem, SE Celniker, ES Goldstein, SJ Newfeld
    posted to drosophila overlapping_gene by cisevol on 2008-03-28 07:23:37 as ** along with 1 group BergmanLab
  • Chimeric retrogenes suggest a role for the nucleolus in LINE amplification.
    FEBS Lett, Vol. 581, No. 16. (26 June 2007), pp. 2877-2882.
    by A Buzdin, E Gogvadze, MH Lebrun
    posted to chimera transposon by cisevol on 2008-03-26 11:43:00 as ** along with 1 group BergmanLab
  • At least 50% of human-specific HERV-K (HML-2) long terminal repeats serve in vivo as active promoters for host nonrepetitive DNA transcription.
    J Virol, Vol. 80, No. 21. (November 2006), pp. 10752-10762.
    by A Buzdin, E Kovalskaya-Alexandrova, E Gogvadze, E Sverdlov
    posted to mammals transposon by cisevol on 2008-03-26 11:40:35 as ** along with 1 person and 1 group yoanjacquemin BergmanLab
  • Exonization of the LTR transposable elements in human genome
    BMC Genomics, Vol. 8 (28 August 2007), 291.
    by Jittima Piriyapongsa, Nalini Polavarapu, Mark Borodovsky, John Mcdonald
    posted to mammals transposon by cisevol on 2008-03-25 22:07:42 as ** along with 3 people and 1 group wenhan yoanjacquemin FMoncini BergmanLab
  • Impact of Transcription Units rearrangement on the evolution of the regulatory network of gamma-proteobacteria
    BMC Genomics, Vol. 9 (17 March 2008), 128.
    by Abel, Evelyn G Gonzalez, Vladimir E Angarica, Ana, Julio Collado-Vides
    posted to bacteria cis-regulatory by cisevol on 2008-03-20 18:15:11 as ** along with 1 group cis-regulatory-evolution
  • Characterization of new hAT transposable elements in 12 Drosophila genomes.
    Genetica (14 March 2008)
    by Mauro de Freitas Ortiz, Elgion L Loreto
    posted to no-tag by cisevol on 2008-03-15 19:59:35 as ** along with 1 person and 1 group operon BergmanLab
  • Computation-Based Discovery of Cis-Regulatory Modules by Hidden Markov Model.
    J Comput Biol (11 March 2008)
    by Jing Wu, Jun Xie
    posted to cis-regulatory model by cisevol on 2008-03-13 19:45:10 as ** along with 3 people and 1 group pradiptaray maximilianh csdhwang BergmanLab
  • The Evolution of Gene Regulation Underlies a Morphological Difference between Two Drosophila Sister Species.
    Cell, Vol. 132, No. 5. (7 March 2008), pp. 783-793.
    by S Jeong, M Rebeiz, P Andolfatto, T Werner, J True, SB Carroll
    posted to cis-regulatory flies by cisevol on 2008-03-11 21:52:20 as ** along with 1 person and 1 group Stew cis-regulatory-evolution
  • Links between core promoter and basic gene features influence gene expression
    BMC Genomics, Vol. 9 (25 February 2008), 92.
    by Sandra Moshonov, Rofa Elfakess, Michal Golan-Mashiach, Hadar Sinvani, Rivka Dikstein
    posted to cis-regulatory by cisevol on 2008-02-29 09:36:38 as ** along with 2 groups cis-regulatory-evolution BergmanLab
  • Great exaptations
    Journal of Biology, Vol. 7 (15 February 2008), 5.
    by Kathleen H Burns, Jef D Boeke
    posted to mammals transposon by cisevol on 2008-02-26 11:48:41 as ** along with 1 group BergmanLab
  • Transposable elements as tools for genomics and genetics in Drosophila
    Brief Funct Genomic Proteomic, Vol. 2, No. 1. (1 January 2003), pp. 57-71.
    by Edward Ryder, Steven Russell
    posted to drosophila p-element transposon by cisevol on 2008-02-23 13:48:18 as ** along with 3 people and 1 group pradiptaray RMGraze yulian2108 BergmanLab
  • Comparative expression analysis uncovers novel features of endogenous antisense transcription.
    Hum Mol Genet (18 February 2008)
    by Yuki Okada, Chiaki Tashiro, Koji Numata, Kazufumi Watanabe, Hajime Nakaoka, Naoyuki Yamamoto, Kazue Okubo, Rieko Ikeda, Rintaro Saito, Akio Kanai, Kuniya Abe, Masaru Tomita, Hidenori Kiyosawa
    posted to mammals overlapping_gene by cisevol on 2008-02-20 21:33:15 as ** along with 1 group BergmanLab
  • Functional persistence of exonized mammalian-wide interspersed repeat elements (MIRs).
    Genome Res, Vol. 17, No. 8. (August 2007), pp. 1139-1145.
    by M Krull, M Petrusma, W Makalowski, J Brosius, J Schmitz
    posted to mammals transposon by cisevol on 2008-02-20 11:30:00 as ** along with 2 people and 1 group dchughes FMoncini BergmanLab
  • Biased exonization of transposed elements in duplicated genes: A lesson from the TIF-IA gene
    BMC Molecular Biology, Vol. 8 (29 November 2007), 109.
    by Maayan Amit, Noa Sela, Hadas Keren, Ze'ev Melamed, Inna Muler, Noam Shomron, Shai Izraeli, Gil Ast
    posted to mammals transposon by cisevol on 2008-02-18 23:25:35 as ** along with 1 group BergmanLab
    • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/user/cisevol

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