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chad_davis proj_interprets [23 articles]

最近 chad_davis さんのライブラリに追加された論文の中から タグ proj_interprets. You can also see everyone's proj_interprets.
  • notes Optimal contact map alignment of protein-protein interfaces.
    Bioinformatics (Oxford, England), Vol. 24, No. 20. (15 October 2008), pp. 2324-2328.
    by V Pulim, B Berger, J Bienkowska
    posted to structure proj_interprets ppi complexes binding alignment algorithm by chad_davis on 2008-10-09 18:28:32 as **
  • Computational methods for the prediction of protein interactions.
    Curr Opin Struct Biol, Vol. 12, No. 3. (June 2002), pp. 368-373.
    by A Valencia, F Pazos
    posted to review proj_interprets proj_assembly ppi algorithm by chad_davis on 2008-10-08 15:48:08 as *** along with 2 people eckart_bindewald marti
  • Interactome data and databases: different types of protein interaction.
    Comparative and functional genomics, Vol. 5, No. 2. (2004), pp. 173-178.
    by J De Las Rivas, A de Luis
    posted to review proj_interprets proj_assembly ppi networks by chad_davis on 2008-10-08 10:56:48 as ***
  • APID: Agile Protein Interaction DataAnalyzer.
    Nucleic acids research, Vol. 34, No. Web Server issue. (1 July 2006)
    by C Prieto, J De Las Rivas
    posted to web_service proj_interprets proj_assembly ppi networks download database data_integration by chad_davis on 2008-10-08 10:53:05 as *** along with 1 person satre
  • notes PRISM: protein interactions by structural matching.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by U Ogmen, O Keskin, AS Aytuna, R Nussinov, A Gursoy
    posted to web_service structure proj_interprets proj_assembly ppi binding algorithm by chad_davis on 2008-10-07 10:15:00 as ***** along with 4 people apaydin bicko j3xucite henschel
  • Identifying Cognate Binding Pairs among a Large Set of Paralogs: The Case of PE/PPE Proteins of Mycobacterium tuberculosis
    PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000174.
    by Robert Riley, Matteo Pellegrini, David Eisenberg
    posted to proj_interprets ppi evolution algorithm by chad_davis on 2008-10-06 13:56:25 as **** along with 1 person Ema
  • In different organisms, the mode of interaction between two signaling proteins is not necessarily conserved.
    Proc Natl Acad Sci U S A, Vol. 101, No. 32. (10 August 2004), pp. 11646-11651.
    by SY Park, BD Beel, MI Simon, AM Bilwes, BR Crane
    posted to validation structure proj_interprets evolution binding by chad_davis on 2008-09-17 16:56:13 as **** along with 2 people bicko RebeccaHamer
  • Analyzing Protein Interaction Networks Using Structural Information
    Annual Review of Biochemistry, Vol. 77, No. 1. (2008)
    by Christina Kiel, Pedro Beltrao, Luis Serrano
    posted to structure review proj_interprets proj_assembly ppi networks embl data_integration by chad_davis on 2008-09-17 16:51:18 as *** along with 8 people and 1 group Borelli bicko neils Evangelia grahamc paolomarcatili phoenixzxl zwang structural_bioinformatics
  • Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Andrew Bordner, Andrey Gorin
    posted to web_service structure proj_interprets proj_assembly non-redundant database clustering binding annotation by chad_davis on 2008-09-16 10:09:39 as **** along with 4 people jyuh neils phoenixzxl bicko
  • MINT: the Molecular INTeraction database.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by A Chatr-aryamontri, A Ceol, LM Palazzi, G Nardelli, MV Schneider, L Castagnoli, G Cesareni
    posted to web_service proj_interprets ppi database by chad_davis on 2008-09-16 09:57:32 as ** along with 2 people massivemayhem bicko
  • DAPID: a 3D-domain annotated protein-protein interaction database.
    Genome informatics. International Conference on Genome Informatics, Vol. 17, No. 2. (2006), pp. 206-215.
    by YC Chen, HC Chen, JM Yang
    posted to database proj_assembly proj_interprets structure web_service by chad_davis on 2008-08-26 18:18:15 as *** along with 1 person bicko
  • PPiClust: EFFICIENT CLUSTERING OF 3D PROTEIN-PROTEIN INTERACTION INTERFACES.
    Journal of bioinformatics and computational biology, Vol. 6, No. 3. (June 2008), pp. 415-433.
    by Z Aung, SH Tan, SK Ng, KL Tan
    posted to algorithm clustering ppi proj_assembly proj_interprets structure by chad_davis on 2008-08-26 18:15:46 as ***** along with 1 person bicko
  • Protein structure alignment considering phenotypic plasticity.
    Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008)
    by G Csaba, F Birzele, R Zimmer
    posted to algorithm alignment download evolution proj_assembly proj_interprets structure by chad_davis on 2008-08-12 16:54:27 as ****
  • Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces
    Bioinformatics, Vol. 21, No. 12. (15 June 2005), pp. 2850-2855.
    by Selim S Aytuna, Attila Gursoy, Ozlem Keskin
    posted to algorithm evolution proj_interprets structure binding by chad_davis on 2008-08-12 16:48:10 as **** along with 5 people cjeans selrac higueruelo bicko kgutwin
  • notes Energetics of protein-protein interactions: analysis of the barnase-barstar interface by single mutations and double mutant cycles.
    Journal of molecular biology, Vol. 248, No. 2. (28 April 1995), pp. 478-486.
    by G Schreiber, AR Fersht
    posted to chemistry classic complexes experimental proj_interprets structure binding by chad_davis on 2008-08-08 17:25:37 as *** along with 1 person bicko
  • Statistical Analysis of Interface Similarity in Crystals of Homologous Proteins.
    Journal of molecular biology (7 June 2008)
    by Qifang Xu, Adrian AA Canutescu, Guoli Wang, Maxim Shapovalov, Zoran Obradovic, Roland LL Dunbrack
    posted to complexes database data_integration evolution proj_interprets structure validation binding by chad_davis on 2008-07-06 20:22:42 as read along with 2 people kintoki bicko
  • Alignment of non-covalent interactions at protein-protein interfaces.
    PLoS ONE, Vol. 3, No. 4. (2008)
    by H Zhu, I Sommer, T Lengauer, FS Domingues
    posted to algorithm alignment feature_selection proj_interprets structure binding by chad_davis on 2008-07-03 09:46:49 as ***** along with 2 people marck bicko
  • Coevolution at protein complex interfaces can be detected by the complementarity trace with important impact for predictive docking.
    Proceedings of the National Academy of Sciences of the United States of America (29 May 2008)
    by Hocine Madaoui, Raphaël Guerois
    posted to algorithm complexes docking evolution proj_interprets structure binding by chad_davis on 2008-07-02 18:10:32 as ***** along with 4 people cabbagesofdoom phoenixzxl bicko zwang
  • Taking advantage of local structure descriptors to analyze interresidue contacts in protein structures and protein complexes
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Juliette Martin, Leslie Regad, Catherine Etchebest, Anne C Camproux
    posted to algorithm complexes feature_selection proj_assembly proj_interprets statistics structure binding by chad_davis on 2008-06-15 13:54:46 as *****
  • Structure-based evaluation of in silico predictions of protein-protein interactions using Comparative Docking
    Bioinformatics, Vol. 23, No. 5. (1 March 2007), pp. 573-581.
    by Simon J Cockell, Baldo Oliva, Richard M Jackson
    posted to algorithm complexes docking modelling proj_assembly proj_interprets structure validation binding by chad_davis on 2008-05-28 09:48:47 as **** along with 1 person bicko
  • Scoring residue conservation.
    Proteins, Vol. 48, No. 2. (1 August 2002), pp. 227-241.
    by WS Valdar
    posted to evolution proj_interprets statistics by chad_davis on 2008-05-22 16:02:49 as ** along with 7 people and 2 groups barry pansapiens bicko sriram_s cjeans sobolevnrm marti structural_bioinformatics Bioinformatics
  • notes An assessment of the uses of homologous interactions
    Bioinformatics (27 November 2007), btm576.
    by Ramazan Saeed, Charlotte Deane
    posted to database evolution modelling proj_interprets by chad_davis on 2008-02-29 14:53:57 as read along with 8 people winterschlaefer grahamc cjeans laughcry mingzhi cdeane Pao-Yang samesense
  • A knowledge-based forcefield for protein-protein interface design.
    Proteins, Vol. 70, No. 4. (March 2008), pp. 1540-1550.
    by LA Clark, HW van Vlijmen
    posted to docking proj_interprets binding by chad_davis on 2008-02-29 10:17:59 as ** along with 1 person and 1 group skoddet Nielsen group
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