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chad_davis complexes [79 articles]

最近 chad_davis さんのライブラリに追加された論文の中から タグ complexes. You can also see everyone's complexes.
  • Homology modelling of protein-protein complexes: a simple method and its possibilities and limitations
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Guillaume Launay, Thomas Simonson
    posted to structure proj_assembly modelling complexes binding algorithm by chad_davis on 2008-10-10 07:36:29 as *****
  • notes Optimal contact map alignment of protein-protein interfaces.
    Bioinformatics (Oxford, England), Vol. 24, No. 20. (15 October 2008), pp. 2324-2328.
    by V Pulim, B Berger, J Bienkowska
    posted to structure proj_interprets ppi complexes binding alignment algorithm by chad_davis on 2008-10-09 18:28:32 as **
  • notes Modifying the DPClus algorithm for identifying protein complexes based on new topological structures
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Min Li, Jianer Chen, Jianxin Wang, Bin Hu, Gang Chen
    posted to proj_assembly networks download complexes clustering algorithm by chad_davis on 2008-10-09 15:22:18 as **** along with 1 person neils
  • Protein Structure Fitting and Refinement Guided by Cryo-EM Density
    Structure, Vol. 16, No. 2. (12 February 2008), pp. 295-307.
    by Maya Topf, Keren Lasker, Ben Webb, Haim Wolfson, Wah Chiu, Andrej Sali
    posted to structure proj_assembly modelling data_integration complexes algorithm by chad_davis on 2008-10-08 16:10:16 as ****
  • Structural characterization of assemblies from overall shape and subcomplex compositions.
    Structure, Vol. 13, No. 3. (March 2005), pp. 435-445.
    by F Alber, MF Kim, A Sali
    posted to structure proj_assembly ppi modelling data_integration complexes binding algorithm by chad_davis on 2008-10-08 15:51:24 as ***** along with 1 person faion
  • Using protein binding site prediction to improve protein docking.
    Gene (14 June 2008)
    by Bingding Huang, Michael Schroeder
    posted to web_service structure proj_assembly ppi ensemble download docking complexes binding algorithm by chad_davis on 2008-09-16 09:52:11 as ***** along with 2 people kintoki bicko
  • United we stand: combining structural methods
    Current Opinion in Structural Biology, Vol. In Press, Corrected Proof
    by Nathan P Cowieson, Bostjan Kobe, Jennifer L Martin
    posted to structure review proj_assembly data_integration complexes by chad_davis on 2008-09-13 10:54:58 as ***** along with 1 person paulschlesinger
  • Morphological aspects of oligomeric protein structures.
    Progress in biophysics and molecular biology, Vol. 89, No. 1. (September 2005), pp. 9-35.
    by H Ponstingl, T Kabir, D Gorse, JM Thornton
    posted to complexes embl ppi proj_assembly structure by chad_davis on 2008-08-26 17:56:35 as **** along with 1 person bicko
  • HOMCOS: a server to predict interacting protein pairs and interacting sites by homology modeling of complex structures.
    Nucleic acids research, Vol. 36, No. Web Server issue. (1 July 2008)
    by N Fukuhara, T Kawabata
    posted to binding algorithm complexes modelling proj_assembly structure web_service by chad_davis on 2008-08-21 16:31:17 as read along with 2 people jyuh bicko
  • notes Energetics of protein-protein interactions: analysis of the barnase-barstar interface by single mutations and double mutant cycles.
    Journal of molecular biology, Vol. 248, No. 2. (28 April 1995), pp. 478-486.
    by G Schreiber, AR Fersht
    posted to chemistry classic complexes experimental proj_interprets structure binding by chad_davis on 2008-08-08 17:25:37 as *** along with 1 person bicko
  • Protein Complex Evolution Does Not Involve Extensive Network Rewiring
    PLoS Comput Biol, Vol. 4, No. 7. (25 July 2008), e1000132.
    by Teunis J van Dam, Berend Snel
    posted to complexes evolution proj_assembly structure by chad_davis on 2008-08-07 15:58:06 as ***** along with 1 person cabbagesofdoom
  • Ensemble Non-negative Matrix Factorization Methods for Clustering Protein-Protein Interactions
    Bioinformatics (12 June 2008), btn286.
    by Derek Greene, Gerard Cagney, Nevan Krogan, Padraig Cunningham
    posted to algorithm clustering complexes ensemble proj_assembly binding by chad_davis on 2008-08-05 15:26:09 as *** along with 2 people zwang grahamc
  • ProCope - Protein Complex Prediction and Evaluation
    Bioinformatics (17 July 2008), btn376.
    by Jan Krumsiek, Caroline C Friedel, Ralf Zimmer
    posted to algorithm complexes data_integration proj_assembly structure toolkit web_service by chad_davis on 2008-08-03 22:03:17 as read along with 2 people zwang jyuh
  • Understanding and Predicting Protein Assemblies With 3D Structures.
    Comparative and functional genomics, Vol. 4, No. 4. (2003), pp. 410-415.
    by P Aloy, RB Russell
    posted to algorithm classic complexes data_integration embl modelling proj_assembly structure binding by chad_davis on 2008-08-03 18:17:16 as read
  • MSDmotif: exploring protein sites and motifs
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Adel Golovin, Kim Henrick
    posted to algorithm complexes database data_integration drug embl structure web_service binding by chad_davis on 2008-07-17 16:18:19 as read along with 3 people reyez massivemayhem Evangelia
  • notes Inference of macromolecular assemblies from crystalline state.
    J Mol Biol, Vol. 372, No. 3. (21 September 2007), pp. 774-797.
    by E Krissinel, K Henrick
    posted to algorithm annotation complexes database embl proj_assembly structure validation web_service binding by chad_davis on 2008-07-13 16:28:44 as **** along with 1 person bicko
  • notes Bacterial cell division protein FtsZ assembles into protofilament sheets and minirings, structural homologs of tubulin polymers.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 93, No. 1. (9 January 1996), pp. 519-523.
    by HP Erickson, DW Taylor, KA Taylor, D Bramhill
    posted to complexes proj_assembly structure binding by chad_davis on 2008-07-07 16:07:55 as read
  • Statistical Analysis of Interface Similarity in Crystals of Homologous Proteins.
    Journal of molecular biology (7 June 2008)
    by Qifang Xu, Adrian AA Canutescu, Guoli Wang, Maxim Shapovalov, Zoran Obradovic, Roland LL Dunbrack
    posted to complexes database data_integration evolution proj_interprets structure validation binding by chad_davis on 2008-07-06 20:22:42 as read along with 2 people kintoki bicko
  • Estimating the size of the human interactome
    Proceedings of the National Academy of Sciences (12 May 2008), 0708078105.
    by Michael P Stumpf, Thomas Thorne, Eric de Silva, Ronald Stewart, Hyeong J An, Michael Lappe, Carsten Wiuf
    posted to classic complexes evolution binding by chad_davis on 2008-07-03 11:34:15 as ** along with 21 people and 1 group tharris zwang chrissp100 sanchezbuelna jyuh phoenixzxl tmmurali neils paolomarcatili mjoach xingxu Ema cabbagesofdoom balicea marck friendpine brianb roys Evangelia dragonrez bpcusack C. elegans / WormBase
  • Coevolution at protein complex interfaces can be detected by the complementarity trace with important impact for predictive docking.
    Proceedings of the National Academy of Sciences of the United States of America (29 May 2008)
    by Hocine Madaoui, Raphaël Guerois
    posted to algorithm complexes docking evolution proj_interprets structure binding by chad_davis on 2008-07-02 18:10:32 as ***** along with 4 people cabbagesofdoom phoenixzxl bicko zwang
  • Protein complex identification by supervised graph local clustering
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i250-268.
    by Yanjun Qi, Fernanda Balem, Christos Faloutsos, Judith K Seetharaman, Ziv B Joseph
    posted to algorithm clustering complexes download networks proj_assembly by chad_davis on 2008-07-01 12:09:55 as *** along with 1 person neils
  • A robust approach for analyzing a heterogeneous structural ensemble
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by David F Lowry, Andrew C Hausrath, Gary W Daughdrill
    posted to algorithm clustering complexes disorder evolution proj_disocons structure by chad_davis on 2008-07-01 12:08:08 as ***
  • Homology-based modeling of 3D structures of protein-protein complexes using alignments of modified sequence profiles.
    International journal of biological macromolecules (21 May 2008)
    by Petras JJ Kundrotas, Marc FF Lensink, Emil Alexov
    posted to algorithm alignment complexes data_integration modelling proj_assembly structure binding by chad_davis on 2008-06-29 11:15:36 as ** along with 1 group structural_bioinformatics
  • Using indirect protein-protein interactions for protein complex prediction.
    Journal of bioinformatics and computational biology, Vol. 6, No. 3. (June 2008), pp. 435-466.
    by HN Chua, K Ning, WK Sung, HW Leong, L Wong
    posted to algorithm clustering complexes networks proj_assembly binding by chad_davis on 2008-06-29 11:14:25 as ****
  • Simple fold composition and modular architecture of the nuclear pore complex.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 7. (14 February 2006), pp. 2172-2177.
    by D Devos, S Dokudovskaya, R Williams, F Alber, N Eswar, BT Chait, MP Rout, A Sali
    posted to complexes embl evolution modelling structure by chad_davis on 2008-06-27 14:31:05 as read
  • Taking advantage of local structure descriptors to analyze interresidue contacts in protein structures and protein complexes
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Juliette Martin, Leslie Regad, Catherine Etchebest, Anne C Camproux
    posted to algorithm complexes feature_selection proj_assembly proj_interprets statistics structure binding by chad_davis on 2008-06-15 13:54:46 as *****
  • Role of intrinsic disorder in transient interactions of hub proteins.
    Proteins, Vol. 66, No. 4. (1 March 2007), pp. 761-765.
    by GP Singh, M Ganapathi, D Dash
    posted to complexes disorder networks proj_disocons binding by chad_davis on 2008-06-15 13:40:59 as **** along with 1 person agustinarce
  • Structural characterization of components of protein assemblies by comparative modeling and electron cryo-microscopy.
    Journal of structural biology, Vol. 149, No. 2. (February 2005), pp. 191-203.
    by M Topf, ML Baker, B John, W Chiu, A Sali
    posted to algorithm alignment complexes data_integration modelling proj_assembly structure by chad_davis on 2008-05-28 10:37:06 as ** along with 1 group structural_bioinformatics
  • notes Structural modeling of protein interactions by analogy: application to PSD-95.
    PLoS Comput Biol, Vol. 2, No. 11. (10 November 2006)
    by D Korkin, FP Davis, F Alber, T Luong, MY Shen, V Lucic, MB Kennedy, A Sali
    posted to algorithm complexes docking modelling proj_assembly structure binding by chad_davis on 2008-05-28 10:32:13 as *** along with 1 person and 1 group bicko structural_bioinformatics
  • Combinatorial docking approach for structure prediction of large proteins and multi-molecular assemblies.
    Phys Biol, Vol. 2, No. 4. (November 2005)
    by Y Inbar, H Benyamini, R Nussinov, HJ Wolfson
    posted to algorithm complexes docking download modelling proj_assembly structure binding by chad_davis on 2008-05-28 10:23:55 as read along with 1 person bicko
  • Structure-based evaluation of in silico predictions of protein-protein interactions using Comparative Docking
    Bioinformatics, Vol. 23, No. 5. (1 March 2007), pp. 573-581.
    by Simon J Cockell, Baldo Oliva, Richard M Jackson
    posted to algorithm complexes docking modelling proj_assembly proj_interprets structure validation binding by chad_davis on 2008-05-28 09:48:47 as **** along with 1 person bicko
  • Incorporating high-throughput proteomics experiments into structural biology pipelines: Identification of the low-hanging fruits.
    Proteomics, Vol. 8, No. 10. (19 May 2008), pp. 1959-1964.
    by Roland AA Pache, Patrick Aloy
    posted to complexes embl proj_assembly structure yeast by chad_davis on 2008-05-25 01:26:08 as *****
  • The elusive yeast interactome.
    Genome Biol, Vol. 7, No. 6. (2006)
    by J Goll, P Uetz
    posted to complexes experimental networks proj_assembly review yeast binding by chad_davis on 2008-05-05 09:11:33 as *** along with 3 people maryee eukfn Evangelia
  • An analysis of conformational changes on protein-protein association: implications for predictive docking.
    Protein Eng, Vol. 12, No. 4. (April 1999), pp. 271-283.
    by MJ Betts, MJ Sternberg
    posted to complexes docking embl structure binding by chad_davis on 2008-05-04 15:32:44 as **** along with 2 people bicko ffranca
  • From pull-down data to protein interaction networks and com-plexes with biological relevance.
    Bioinformatics (26 February 2008)
    by Bing Zhang, Byung, Tatiana Karpinets, Nagiza FF Samatova
    posted to algorithm complexes networks proj_assembly binding by chad_davis on 2008-04-22 12:02:54 as *** along with 4 people jyuh grahamc kluck carlk
  • Subunit architecture of multimeric complexes isolated directly from cells
    EMBO Reports, Vol. aop, No. current. (18 August 2006)
    by Helena Hernandez, Andrzej Dziembowski, Thomas Taverner, Bertrand Seraphin, Carol V Robinson
    posted to classic complexes experimental networks proj_assembly structure yeast binding by chad_davis on 2008-04-21 14:01:55 as ** along with 1 person faion
  • Biological units and their effect upon the properties and prediction of protein-protein interactions.
    J Mol Biol, Vol. 364, No. 5. (15 December 2006), pp. 1118-1129.
    by ER Jefferson, TP Walsh, GJ Barton
    posted to annotation clustering complexes data_integration non-redundant proj_assembly review structure binding by chad_davis on 2008-04-21 12:40:18 as ** along with 1 person bicko
  • Real-Time Monitoring of Protein Complexes Reveals their Quaternary Organization and Dynamics.
    Chemistry & biology, Vol. 15, No. 3. (March 2008), pp. 246-253.
    by AJ Painter, N Jaya, E Basha, E Vierling, CV Robinson, JL Benesch
    posted to chemistry complexes experimental proj_assembly binding by chad_davis on 2008-04-16 17:24:51 as ***
  • Subunit Architecture of Intact Protein Complexes from Mass Spectrometry and Homology Modeling
    Acc. Chem. Res. (4 March 2008)
    by Thomas Taverner, Helena Hernandez, Michal Sharon, Brandon T Ruotolo, Dijana M Vinkovic, Damien Devos, Robert B Russell, Carol V Robinson
    posted to algorithm complexes embl experimental modelling networks proj_assembly structure yeast binding by chad_davis on 2008-03-10 08:53:48 as read along with 1 person faion
  • Integrating Diverse Data for Structure Determination of Macromolecular Assemblies.
    Annu Rev Biochem (4 March 2008)
    by Frank Alber, Friedrich Förster, Dmitry Korkin, Maya Topf, Andrej Sali
    posted to algorithm complexes data_integration modelling proj_assembly review structure by chad_davis on 2008-03-10 08:49:35 as read along with 1 person phoenixzxl
  • M-TASSER: an algorithm for protein quaternary structure prediction.
    Biophys J, Vol. 94, No. 3. (1 February 2008), pp. 918-928.
    by H Chen, J Skolnick
    posted to algorithm complexes proj_assembly structure by chad_davis on 2008-02-28 16:31:45 as read
  • Components of Coated Vesicles and Nuclear Pore Complexes Share a Common Molecular Architecture
    PLoS Biology, Vol. 2, No. 12. (1 December 2004), e380.
    by Damien Devos, Svetlana Dokudovskaya, Frank Alber, Rosemary Williams, Brian T Chait, Andrej Sali, Michael P Rout
    posted to complexes embl evolution structure by chad_davis on 2008-02-21 12:32:21 as **
  • Physiological effects of unassembled chaperonin Cct subunits in the yeast Saccharomyces cerevisiae.
    Yeast, Vol. 22, No. 3. (February 2005), pp. 219-239.
    by MA Kabir, J Kaminska, GB Segel, G Bethlendy, P Lin, F Della Seta, C Blegen, KM Swiderek, T Zoładek, KT Arndt, F Sherman
    posted to proj_cct complexes experimental yeast binding by chad_davis on 2008-02-06 17:06:45 as *****
  • PROTCOM: searchable database of protein complexes enhanced with domain-domain structures.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by PJ Kundrotas, E Alexov
    posted to complexes database by chad_davis on 2008-01-15 17:53:29 as **** along with 1 person bicko
  • Localization of protein-binding sites within families of proteins.
    Protein Sci, Vol. 14, No. 9. (September 2005), pp. 2350-2360.
    by D Korkin, FP Davis, A Sali
    posted to complexes evolution structure binding by chad_davis on 2008-01-15 10:17:27 as ***** along with 5 people and 4 groups barry tjimenez bicko marcius wilbur structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • IPPRED: server for proteins interactions inference.
    Bioinformatics, Vol. 19, No. 7. (1 May 2003), pp. 903-904.
    by N Goffard, V Garcia, F Iragne, A Groppi, A de Daruvar
    posted to complexes algorithm binding by chad_davis on 2008-01-10 18:07:08 as read along with 1 person bicko
  • Eukaryotic chaperonin CCT stabilizes actin and tubulin folding intermediates in open quasi-native conformations.
    EMBO J, Vol. 19, No. 22. (15 November 2000), pp. 5971-5979.
    by O Llorca, Martín J Benito, Ritco M Vonsovici, J Grantham, GM Hynes, KR Willison, JL Carrascosa, JM Valpuesta
    posted to complexes experimental structure proj_cct binding by chad_davis on 2008-01-08 16:58:53 as *****
  • The 'sequential allosteric ring' mechanism in the eukaryotic chaperonin-assisted folding of actin and tubulin.
    EMBO J, Vol. 20, No. 15. (1 August 2001), pp. 4065-4075.
    by O Llorca, Martín J Benito, J Grantham, Ritco M Vonsovici, KR Willison, JL Carrascosa, JM Valpuesta
    posted to complexes docking experimental structure proj_cct binding by chad_davis on 2008-01-08 16:47:06 as *****
  • Crystal structure of the CCTgamma apical domain: implications for substrate binding to the eukaryotic cytosolic chaperonin.
    J Mol Biol, Vol. 318, No. 5. (17 May 2002), pp. 1367-1379.
    by G Pappenberger, JA Wilsher, SM Roe, DJ Counsell, KR Willison, LH Pearl
    posted to complexes experimental structure proj_cct binding by chad_davis on 2008-01-08 16:29:30 as *****
  • Nested allosteric interactions in the cytoplasmic chaperonin containing TCP-1.
    Protein Sci, Vol. 10, No. 2. (February 2001), pp. 445-449.
    by G Kafri, KR Willison, A Horovitz
    posted to complexes experimental proj_cct by chad_davis on 2008-01-08 11:02:24 as *****
    • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/user/chad_davis/tag/complexes

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