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brianb proteomics [142 articles]

最近 brianb さんのライブラリに追加された論文の中から タグ proteomics. You can also see everyone's proteomics.
  • A Fast SEQUEST Cross Correlation Algorithm
    J. Proteome Res. (6 September 2008)
    by Jimmy K Eng, Bernd Fischer, Jonas Grossmann, Michael J Maccoss
    posted to proteomics fdr bioinformatics by brianb on 2008-09-06 14:57:36 as **
  • Stable Isotope Labeling Tandem Mass Spectrometry (SILT): Integration with Peptide Identification and Extension to Data-Dependent Scans
    J. Proteome Res. (6 September 2008)
    by Donald L Elbert, Kwasi G Mawuenyega, Evan A Scott, Kristin R Wildsmith, Randall J Bateman
    posted to quantitation proteomics bioinformatics by brianb on 2008-09-06 14:56:38 as **
  • Identification of Four Novel Types of in Vitro Protein Modifications
    J. Proteome Res. (4 September 2008)
    by Gang Xing, Junmei Zhang, Yue Chen, Yingming Zhao
    posted to ptm proteomics by brianb on 2008-09-05 23:08:02 as ** along with 1 person neils
  • High-Efficiency Microarray Printer Using Fused-Silica Capillary Tube Printing Pins
    Anal. Chem. (3 September 2008)
    by Steve M Clark, Gregory E Hamilton, Robert A Nordmeyer, Donald Uber, Earl W Cornell, Nils Brown, Richard Segraves, Randy Davis, Donna G Albertson, Daniel Pinkel
    posted to proteomics arrays by brianb on 2008-09-04 01:08:22 as **
  • Assessment of serum proteomics to detect large colon adenomas.
    Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology, Vol. 17, No. 8. (August 2008), pp. 2188-2193.
    by DF Ransohoff, C Martin, WS Wiggins, BA Hitt, TO Keku, JA Galanko, RS Sandler
    posted to bias plasma proteomics by brianb on 2008-08-30 23:26:13 as **
  • Increasing information from shotgun proteomic data by accounting for misassigned precursor ion masses
    PROTEOMICS, Vol. 8, No. 14. (2008), pp. 2791-2797.
    by Alexander Scherl, Yihsuan S Tsai, Scott A Shaffer, David R Goodlett
    posted to bioinformatics fdr proteomics by brianb on 2008-08-29 01:13:48 as ** along with 1 person nedwards
  • A Quantitative Proteomic Approach for Identification of Potential Biomarkers in Hepatocellular Carcinoma
    J. Proteome Res. (21 August 2008)
    by Raghothama Chaerkady, HC Harsha, Anuradha Nalli, Marjan Gucek, Perumal Vivekanandan, Javed Akhtar, Robert N Cole, Jessica Simmers, Richard D Schulick, Sujay Singh, Michael Torbenson, Akhilesh Pandey, Paul J Thuluvath
    posted to cancer proteomics by brianb on 2008-08-28 02:05:39 as **
  • Cell surface proteomics identifies molecules functionally linked to tumor cell intravasation
    J. Biol. Chem. (24 July 2008), M803337200.
    by Erin M Conn, Mark A Madsen, Benjamin F Cravatt, Wolfram Ruf, Elena I Deryugina, James P Quigley
    posted to cancer proteomics quantitation by brianb on 2008-08-28 01:58:18 as **
  • TandTRAQ: an open-source tool for integrated protein identification and quantitation.
    Bioinformatics (Oxford, England), Vol. 23, No. 24. (15 December 2007), pp. 3394-3396.
    by T Laderas, C Bystrom, D McMillen, G Fan, S McWeeney
    posted to bioinformatics itraq proteomics quantitation by brianb on 2008-08-27 23:32:54 as ** along with 1 person jyuh
  • Calibrating E-values for MS2 database search methods
    Biology Direct, Vol. 2 (05 November 2007), 26.
    by Gelio Alves, Aleksey Y Ogurtsov, Wells W Wu, Guanghui Wang, Rong-Fong Shen, Yi-Kuo Yu
    posted to bioinformatics fdr proteomics by brianb on 2008-08-27 23:31:08 as ** along with 1 person nedwards
  • Comparison of Mascot and X!Tandem Performance for Low and High Accuracy Mass Spectrometry and the Development of an Adjusted Mascot Threshold
    Mol Cell Proteomics, Vol. 7, No. 5. (1 May 2008), pp. 962-970.
    by Markus Brosch, Sajani Swamy, Tim Hubbard, Jyoti Choudhary
    posted to bioinformatics fdr proteomics by brianb on 2008-08-27 23:30:05 as ** along with 1 person olberd
  • Detection of co-eluted peptides using database search methods
    Biology Direct, Vol. 3 (02 July 2008), 27.
    by Gelio Alves, Aleksey Y Ogurtsov, Siwei Kwok, Wells W Wu, Guanghui Wang, Rong-Fong Shen, Yi-Kuo Yu
    posted to bioinformatics chromatography fdr proteomics by brianb on 2008-08-27 23:23:58 as **
  • A robust linear regression based algorithm for automated evaluation of peptide identifications from shotgun proteomics by use of reversed-phase liquid chromatography retention time
    BMC Bioinformatics, Vol. 9 (19 August 2008), 347.
    by Hua Xu, Lanhao Yang, Michael A Freitas
    posted to bioinformatics chromatography fdr proteomics by brianb on 2008-08-27 23:19:45 as **
  • X!!Tandem, an Improved Method for Running X!Tandem in Parallel on Collections of Commodity Computers
    J. Proteome Res., Vol. 7, No. 1. (4 January 2008), pp. 293-299.
    by Robert D Bjornson, Nicholas J Carriero, Christopher Colangelo, Mark Shifman, Kei-Hoi Cheung, Perry L Miller, Kenneth Williams
    posted to bioinformatics proteomics by brianb on 2008-08-27 22:39:08 as **
  • Spectral dictionaries: Integrating de novo peptide sequencing with database search of tandem mass spectra
    Mol Cell Proteomics (14 August 2008), M800103-MCP200.
    by Sangtae Kim, Nitin Gupta, Nuno Bandeira, Pavel A Pevzner
    posted to bioinformatics proteomics by brianb on 2008-08-27 19:42:50 as **
  • Precursor-Ion Mass Re-Estimation Improves Peptide Identification on Hybrid Instruments
    J. Proteome Res. (16 August 2008)
    by Roland Luethy, Darren E Kessner, Jonathan E Katz, Brendan Maclean, Robert Grothe, Kian Kani, Vitor Faça, Sharon Pitteri, Samir Hanash, David B Agus, Parag Mallick
    posted to bioinformatics proteomics by brianb on 2008-08-17 22:57:36 as **
  • Immobilized Metal Affinity Chromatography Revisited: pH/Acid Control toward High Selectivity in Phosphoproteomics
    J. Proteome Res. (16 August 2008)
    by Chia-Feng Tsai, Yi-Ting Wang, Yet-Ran Chen, Chen-Yu Lai, Pei-Yi Lin, Kuan-Ting Pan, Jeou-Yuan Chen, Kay-Hooi Khoo, Yu-Ju Chen
    posted to phosphorylation proteomics by brianb on 2008-08-17 22:57:24 as ** along with 1 person neils
  • DIABLA: A New Screening Method for the Discovery of Protein Targets
    J. Proteome Res. (16 August 2008)
    by Robbie Montgomery, Hanna Shay, Matthew Mccarroll, Luke Tolley
    posted to diganostic electrophoresis proteomics by brianb on 2008-08-17 21:56:53 as **
  • Nonlinear Fitting Method for Determining Local False Discovery Rates from Decoy Database Searches
    J. Proteome Res. (14 August 2008)
    by Wilfred H Tang, Ignat V Shilov, Sean L Seymour
    posted to fdr proteomics by brianb on 2008-08-14 15:44:00 as **
  • A simplified multidimensional approach for analysis of complex biological samples: on-line LC-CE-MS
    Analyst, Vol. 131, No. 7. (2006), pp. 791-798.
    by Sara K Bergstrom, Andreas P Dahlin, Margareta Ramstrom, Marit Andersson, Karin E Markides, Jonas Bergquist
    posted to chromatography electrophoresis proteomics by brianb on 2008-08-13 22:58:19 as **
  • Assessing the Dynamic Range and Peak Capacity of Nanoflow LC−FAIMS−MS on an Ion Trap Mass Spectrometer for Proteomics
    Anal. Chem. (12 August 2008)
    by Jesse D Canterbury, Xianhua Yi, Michael R Hoopmann, Michael J Maccoss
    posted to chromatography faims proteomics by brianb on 2008-08-13 22:51:23 as **
  • Fully Integrated Glass Microfluidic Device for Performing High-Efficiency Capillary Electrophoresis and Electrospray Ionization Mass Spectrometry
    Anal. Chem. (13 August 2008)
    by JS Mellors, V Gorbounov, RS Ramsey, JM Ramsey
    posted to electrophoresis proteomics by brianb on 2008-08-13 22:34:27 as **
  • Identification of c-Src Tyrosine Kinase Substrates Using Mass Spectrometry and Peptide Microarrays
    J. Proteome Res. (13 August 2008)
    by Ramars Amanchy, Jun Zhong, Henrik Molina, Raghothama Chaerkady, Akiko Iwahori, Dario E Kalume, Mads Grønborg, Jos Joore, Leslie Cope, Akhilesh Pandey
    posted to arrays phosphorylation proteomics silac by brianb on 2008-08-13 22:18:58 as **
  • PhosphoPOINT: a comprehensive human kinase interactome and phospho-protein database
    Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i14-20.
    by Chia-Ying Yang, Chao-Hui Chang, Ya-Ling Yu, Tsu-Chun E Lin, Sheng-An Lee, Chueh-Chuan Yen, Jinn-Moon Yang, Jin-Mei Lai, Yi-Ren Hong, Tzu-Ling Tseng, Kun-Mao Chao, Chi-Ying F Huang
    posted to interaction phosphorylation proteomics by brianb on 2008-08-11 05:31:20 as ** along with 3 people Yanno renatomilani neils
  • Gain and loss of phosphorylation sites in human cancer
    Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i241-247.
    by Predrag Radivojac, Peter H Baenziger, Maricel G Kann, Matthew E Mort, Matthew W Hahn, Sean D Mooney
    posted to cancer phosphorylation proteomics by brianb on 2008-08-11 05:30:46 as ** along with 1 person neils
  • A quantitative atlas of mitotic phosphorylation.
    Proceedings of the National Academy of Sciences of the United States of America (31 July 2008)
    by Noah Dephoure, Chunshui Zhou, Judit Villén, Sean A A Beausoleil, Corey E E Bakalarski, Stephen J J Elledge, Steven P P Gygi
    posted to phosphorylation proteomics by brianb on 2008-08-08 15:16:06 as ** along with 2 people jyuh renatomilani
  • A Mitochondrial Protein Compendium Elucidates Complex I Disease Biology
    Cell, Vol. 134, No. 1. (11 July 2008), pp. 112-123.
    by David J Pagliarini, Sarah E Calvo, Betty Chang, Sunil A Sheth, Scott B Vafai, Shao-En Ong, Geoffrey A Walford, Canny Sugiana, Avihu Boneh, William K Chen, David E Hill, Marc Vidal, James G Evans, David R Thorburn, Steven A Carr, Vamsi K Mootha
    posted to proteomics sysbio by brianb on 2008-08-08 15:07:01 as ** along with 4 people neils ptrobajo raiyar mdstobbe
  • A portrait of tissue phosphoprotein stability in the clinical tissue procurement process.
    Molecular & cellular proteomics : MCP (30 July 2008)
    by Virginia A A Espina, Kirsten H H Edmiston, Michael Heiby, Mariaelena Pierobon, Manuela Sciro, Barbara Merritt, Stacey Banks, Jianghong Deng, Amy J J Vanmeter, David H H Geho, Lucia Pastore, Joel Sennesh, Emanuel F F Petricoin, Lance A A Liotta
    posted to phosphorylation proteomics tissue by brianb on 2008-08-08 14:57:06 as **
  • The impact of microRNAs on protein output
    Nature (30 July 2008)
    by Daehyun Baek, Judit Villã©n, Chanseok Shin, Fernando D Camargo, Steven P Gygi, David P Bartel
    posted to mirna proteomics by brianb on 2008-08-08 14:56:11 as ** along with 10 people giovenko mtagaya megraw djkt emptyhb erel10 maralena ajaymalik caizhiqiang gdb
  • The Ser/Thr/Tyr phosphoproteome of Lactococcus lactis IL1403 reveals multiply phosphorylated proteins.
    Proteomics (31 July 2008)
    by Boumediene Soufi, Florian Gnad, Peter Ruhdal R Jensen, Dina Petranovic, Matthias Mann, Ivan Mijakovic, Boris Macek
    posted to phosphorylation prokaryote proteomics by brianb on 2008-08-08 14:51:22 as **
  • Practical Implementation of 2D HPLC Scheme with Accurate Peptide Retention Prediction in Both Dimensions for High-Throughput Bottom-Up Proteomics
    Anal. Chem. (8 August 2008)
    by Ravi C Dwivedi, Vic Spicer, Michael Harder, Mihaela Antonovici, Werner Ens, Kenneth G Standing, John A Wilkins, Oleg V Krokhin
    posted to chromatography proteomics by brianb on 2008-08-08 14:48:15 as **
  • Rapid Sample Processing for LC-MS-Based Quantitative Proteomics Using High Intensity Focused Ultrasound
    J. Proteome Res. (8 August 2008)
    by Daniel López-Ferrer, Tyler H Heibeck, Konstantinos Petritis, Kim K Hixson, Weijun Qian, Matthew E Monroe, Anoop Mayampurath, Ronald J Moore, Mikhail E Belov, David G Camp, Richard D Smith
    posted to proteomics sample_prep by brianb on 2008-08-08 14:47:35 as **
  • Targeted Online Liquid Chromatography Electron Capture Dissociation Mass Spectrometry for the Localization of Sites of in Vivo Phosphorylation in Human Sprouty2
    Anal. Chem. (7 August 2008)
    by Steve M Sweet, Faraz K Mardakheh, Kevin J Ryan, Amy J Langton, John K Heath, Helen J Cooper
    posted to phosphorylation proteomics by brianb on 2008-08-07 15:08:47 as **
  • Comparison of Two-Dimensional Fractionation Techniques for Shotgun Proteomics
    Anal. Chem. (5 August 2008)
    by James A Dowell, Dustin C Frost, Jiang Zhang, Lingjun Li
    posted to chromatography proteomics by brianb on 2008-08-06 05:01:26 as **
  • Improving the success rate of proteome analysis by modeling protein-abundance distributions and experimental designs
    Nature Biotechnology, Vol. 25, No. 6., pp. 651-655.
    by Jan Eriksson, David Fenyö
    posted to chromatography modeling proteomics by brianb on 2008-07-30 15:56:00 as ** along with 3 people and 1 group jyuh grahamc nedwards ParkinsonLab_at_MaRS
  • Development and Characterization of an Ionization Technique for Analysis of Biological Macromolecules: Liquid Matrix-Assisted Laser Desorption Electrospray Ionization
    Anal. Chem. (26 July 2008)
    by Jason S Sampson, Adam M Hawkridge, David C Muddiman
    posted to ionization proteomics by brianb on 2008-07-26 15:53:25 as **
  • Capillary electrophoresis-based immunoassays: Principles and quantitative applications
    ELECTROPHORESIS, Vol. 9999, No. 9999. (2008), NA.
    by Annette C Moser, David S Hage
    posted to antibody electrophoresis proteomics by brianb on 2008-07-26 06:21:17 as **
  • Automated SPR-LC−MS/MS System for Protein Interaction Analysis
    J. Proteome Res. (25 July 2008)
    by Toshiya Hayano, Yoshio Yamauchi, Kazunobu Asano, Teruko Tsujimura, Setsuko Hashimoto, Toshiaki Isobe, Nobuhiro Takahashi
    posted to chromatography interaction proteomics spr by brianb on 2008-07-26 06:14:46 as **
  • PatternLab for proteomics: a tool for differential shotgun proteomics
    BMC Bioinformatics, Vol. 9 (21 July 2008), 316.
    by Paulo C Carvalho, Juliana SG Fischer, Emily I Chen, John R Yates, Valmir C Barbosa
    posted to bioinformatics proteomics statistics by brianb on 2008-07-23 22:12:35 as ** along with 1 person jyuh
  • Cleaning of raw peptide MS/MS spectra: improved protein identification following deconvolution of multiply charged peaks, isotope clusters, and removal of background noise.
    Proteomics, Vol. 6, No. 19. (October 2006), pp. 5117-5131.
    by N Mujezinovic, G Raidl, JR Hutchins, JM Peters, K Mechtler, F Eisenhaber
    posted to bioinformatics fdr proteomics by brianb on 2008-07-23 21:21:42 as **
  • Surface Area of Reversed-Phase HPLC Columns
    Anal. Chem. (23 July 2008)
    by A Giaquinto, Zhaoxia Liu, Andrew Bach, Yuri Kazakevich
    posted to chromatography proteomics by brianb on 2008-07-23 16:17:16 as **
  • DirecTag: Accurate Sequence Tags from Peptide MS/MS through Statistical Scoring
    J. Proteome Res. (17 July 2008)
    by David L Tabb, Ze-Qiang Ma, Daniel B Martin, Amy-Joan L Ham, Matthew C Chambers
    posted to bioinformatics proteomics by brianb on 2008-07-22 15:38:33 as **
  • Enhanced detection of low abundant human plasma proteins using a tandem IgY12-supermix immunoaffinity separation strategy
    Mol Cell Proteomics (15 July 2008), M800008-MCP200.
    by Wei-Jun Qian, David T Kaleta, Brianne O Petritis, Hongliang Jiang, Tao Liu, Xu Zhang, Heather M Mottaz, Susan M Varnum, David G Camp, Lei Huang, Xiangming Fang, Wei-Wei Zhang, Richard D Smith
    posted to antibody chromatography plasma proteomics by brianb on 2008-07-22 15:38:07 as **
  • Reductive Glutaraldehydation of Amine Groups for Identification of Protein N-termini
    J. Proteome Res. (18 July 2008)
    by Allison Russo, Nagarajan Chandramouli, Linqi Zhang, Haiteng Deng
    posted to formaldehyde fragmentation proteomics by brianb on 2008-07-22 15:36:17 as **
  • Application of Proteomic Tools To Detect the Nonspecificity of a Polyclonal Antibody against Lipoprotein Lipase
    J. Proteome Res. (17 July 2008)
    by Albert Casanovas, Montserrat Carrascal, Joaquín Abián, Dolores M López-Tejero, Miquel Llobera
    posted to antibody proteomics by brianb on 2008-07-22 15:35:15 as **
  • Multiple Reaction Monitoring of mTRAQ-Labeled Peptides Enables Absolute Quantification of Endogenous Levels of a Potential Cancer Marker in Cancerous and Normal Endometrial Tissues
    J. Proteome Res. (17 July 2008)
    by Leroi V Desouza, Adrian M Taylor, Wei Li, Marjorie S Minkoff, Alexander D Romaschin, Terence J Colgan, Michael KW Siu
    posted to proteomics quantitation by brianb on 2008-07-22 15:34:36 as **
  • Protein Interaction Data Set Highlighted with Human Ras-MAPK/PI3K Signaling Pathways
    J. Proteome Res. (15 July 2008)
    by Jian Wang, Yanzhi Yuan, Ying Zhou, Longhua Guo, Lingqiang Zhang, Xuezhang Kuai, Binwei Deng, Zhi Pan, Dong Li, Fuchu He
    posted to interaction modeling proteomics y2h by brianb on 2008-07-16 02:04:59 as **
  • Calculation of the isoelectric point of tryptic peptides in the pH 3.5-4.5 range based on adjacent amino acid effects.
    Electrophoresis, Vol. 29, No. 13. (10 July 2008), pp. 2768-2778.
    by Benjamin J J Cargile, Joel R R Sevinsky, Amal S S Essader, Jerry P P Eu, James L L Stephenson
    posted to bioinformatics electrophoresis modeling proteomics by brianb on 2008-07-13 01:07:20 as **
  • Proteome-derived, database-searchable peptide libraries for identifying protease cleavage sites
    Nature Biotechnology, Vol. 26, No. 6. (25 May 2008), pp. 685-694.
    by Oliver Schilling, Christopher M Overall
    posted to proteomics ptm by brianb on 2008-07-07 05:22:54 as ** along with 1 person nedwards
  • Protease-catalysed protein splicing: a new post-translational modification?
    Trends in Biochemical Sciences, Vol. In Press, Corrected Proof
    by Ivana Saska, David J Craik
    posted to proteomics ptm by brianb on 2008-07-07 05:08:13 as **
    • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/user/brianb/tag/proteomics

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