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bozdagd library [74 articles]

最近 bozdagd さんのライブラリ .
  • Massively parallel signature sequencing (MPSS) as a tool for in-depth quantitative gene expression profiling in all organisms
    Brief Funct Genomic Proteomic, Vol. 1, No. 1. (1 January 2002), pp. 95-104.
    by Jeannette Reinartz, Eddy Bruyns, Jing-Zhong Lin, Tim Burcham, Sydney Brenner, Ben Bowen, Michael Kramer, Rick Woychik
    posted to sequencing by bozdagd on 2008-08-29 19:52:24 as **
  • SAGE for Beginners
    http://www.embl-heidelberg.de/info/sage/ (September 1998)
    posted to sequencing sage by bozdagd on 2008-08-27 17:26:52 as **
  • PAINLESS GENE EXPRESSION PROFILING: SAGE (SERIAL ANALYSIS OF GENE EXPRESSION)
    http://www.scq.ubc.ca/painless-gene-expression-profiling-sage-serial-analysis-of-gene-expression/ (August 2004)
    posted to sequencing sage by bozdagd on 2008-08-27 17:24:35 as **
  • SuperSAGE array: the direct use of 26-base-pair transcript tags in oligonucleotide arrays
    Nature Methods, Vol. 3, No. 6. (23 May 2006), pp. 469-474.
    by Hideo Matsumura, Khairun, Kentaro Yoshida, Akiko Ito, Günter Kahl, Detlev H Krüger, Ryohei Terauchi
    posted to sequencing sage by bozdagd on 2008-08-27 16:54:59 as ** along with 1 person maldi
  • SuperSAGE
    Cellular Microbiology, Vol. 7, No. 1., 11.
    by Hideo Matsumura, Akiko Ito, Hiromasa Saitoh, Peter Winter, Gunter Kahl, Monika Reuter, Detlev H Kruger, Ryohei Terauchi
    posted to sequencing sage by bozdagd on 2008-08-27 16:51:37 as **
  • Robust-LongSAGE (RL-SAGE): a substantially improved LongSAGE method for gene discovery and transcriptome analysis.
    Plant physiology, Vol. 134, No. 3. (March 2004), pp. 890-897.
    by M Gowda, C Jantasuriyarat, RA Dean, GL Wang
    posted to sequencing sage by bozdagd on 2008-08-27 16:50:03 as **
  • Using the transcriptome to annotate the genome
    Nat Biotech, Vol. 20, No. 5. (May 2002), pp. 508-512.
    by Saurabh Saha, Andrew B Sparks, Carlo Rago, Viatcheslav Akmaev, Clarence J Wang, Bert Vogelstein, Kenneth W Kinzler, Victor E Velculescu
    posted to sequencing sage by bozdagd on 2008-08-27 16:47:55 as ** along with 1 person olympos
  • Serial analysis of gene expression.
    Science, Vol. 270, No. 5235. (20 October 1995), pp. 484-487.
    by VE Velculescu, L Zhang, B Vogelstein, KW Kinzler
    posted to sequencing sage by bozdagd on 2008-08-27 16:47:13 as ** along with 6 people and 1 group bertelsen xiaobeizhao gurkanbebek jeremymiller epigenetics elzodw GeschwindLab
  • Pyrosequencing sheds light on DNA sequencing.
    Genome Res, Vol. 11, No. 1. (January 2001), pp. 3-11.
    by M Ronaghi
    posted to sequencing 454 by bozdagd on 2008-08-26 22:01:25 as ** along with 5 people and 1 group balicea darioacha kieran101 mariakmejia tpreeprem gatech-compgenomics
  • A sequencing method based on real-time pyrophosphate.
    Science, Vol. 281, No. 5375. (17 July 1998)
    by M Ronaghi, M Uhlén, P Nyrén
    posted to sequencing 454 by bozdagd on 2008-08-26 21:55:25 as ** along with 2 people and 1 group kieran101 tpreeprem gatech-compgenomics
  • Long-Read Pyrosequencing Using Pure 2'-Deoxyadenosine-5'-O'-(1-thiotriphosphate) Sp-Isomer
    Analytical Biochemistry, Vol. 301, No. 1. (1 February 2002), pp. 82-90.
    by Baback Gharizadeh, Tommy Nordström, Afshin Ahmadian, Mostafa Ronaghi, Pål Nyrén
    posted to sequencing 454 by bozdagd on 2008-08-26 21:50:59 as **
  • Pyrosequencing: an accurate detection platform for single nucleotide polymorphisms.
    Hum Mutat, Vol. 19, No. 5. (May 2002), pp. 479-485.
    by H Fakhrai-Rad, N Pourmand, M Ronaghi
    posted to sequencing review 454 by bozdagd on 2008-08-26 21:50:12 as ** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • Improved performance of pyrosequencing using single-stranded DNA-binding protein.
    Anal Biochem, Vol. 286, No. 2. (15 November 2000), pp. 282-288.
    by M Ronaghi
    posted to sequencing 454 by bozdagd on 2008-08-26 21:48:51 as ** along with 1 person and 1 group tpreeprem gatech-compgenomics
  • Base-calling of automated sequencer traces using phred. I. Accuracy assessment.
    Genome Res, Vol. 8, No. 3. (March 1998), pp. 175-185.
    by B Ewing, L Hillier, MC Wendl, P Green
    posted to sequencing by bozdagd on 2008-08-26 21:33:28 as ** along with 3 people and 1 group werwiesel balajis giovanni Bioinformatics
  • Base-calling of automated sequencer traces using phred. II. Error probabilities.
    Genome Res, Vol. 8, No. 3. (March 1998), pp. 186-194.
    by B Ewing, P Green
    posted to sequencing by bozdagd on 2008-08-26 21:31:33 as ** along with 3 people and 2 groups balajis indigoviolet giovanni Bioinformatics EisenLab
  • Real-Time DNA Sequencing Using Detection of Pyrophosphate Release
    Analytical Biochemistry, Vol. 242, No. 1. (1 November 1996), pp. 84-89.
    by Mostafa Ronaghi, Samer Karamohamed, Bertil Pettersson, Mathias Uhlén, Pål Nyrén
    posted to sequencing 454 by bozdagd on 2008-08-26 19:52:28 as ** along with 1 person Neeperando
  • Sequence information can be obtained from single DNA molecules
    PNAS, Vol. 100, No. 7. (1 April 2003), pp. 3960-3964.
    by Ido Braslavsky, Benedict Hebert, Emil Kartalov, Stephen R Quake
    posted to sequencing by bozdagd on 2008-08-26 19:48:44 as ** along with 3 people austin akp yusdi
  • Advanced sequencing technologies and their wider impact in microbiology
    J Exp Biol, Vol. 210, No. 9. (1 May 2007), pp. 1518-1525.
    by Neil Hall
    posted to sequencing review by bozdagd on 2008-08-26 16:37:57 as ** along with 3 people kmdaily xingxu rschulz
  • Pairwise end sequencing: a unified approach to genomic mapping and sequencing.
    Genomics, Vol. 26, No. 2. (20 March 1995), pp. 345-353.
    by JC Roach, C Boysen, K Wang, L Hood
    posted to shotgun sequencing by bozdagd on 2008-08-25 21:34:37 as ** along with 1 person AaronDarling
  • Automated DNA sequencing of the human HPRT locus.
    Genomics, Vol. 6, No. 4. (April 1990), pp. 593-608.
    by A Edwards, H Voss, P Rice, A Civitello, J Stegemann, C Schwager, J Zimmermann, H Erfle, CT Caskey, W Ansorge
    posted to shotgun sequencing by bozdagd on 2008-08-25 21:31:00 as **
  • A strategy of DNA sequencing employing computer programs.
    Nucleic acids research, Vol. 6, No. 7. (11 June 1979), pp. 2601-2610.
    by R Staden
    posted to shotgun sequencing by bozdagd on 2008-08-25 21:12:24 as **
  • A novel thermostable polymerase for DNA sequencing
    Nature, Vol. 376, No. 6543. (1995), pp. 796-797.
    by Michael A Reeve, Carl Fuller,
    posted to sequencing by bozdagd on 2008-08-21 17:56:36 as **
  • Lecture Notes on determination of nucleotide sequences in DNA
    (1980)
    by Frederick Sanger
    posted to sequencing by bozdagd on 2008-08-19 22:15:59 as **
  • The use of thin acrylamide gels for DNA sequencing
    FEBS Letters, Vol. 87, No. 1. (1 March 1978), pp. 107-110.
    by F Sanger, AR Coulson
    posted to sequencing by bozdagd on 2008-08-15 20:04:06 as **
  • A new method for sequencing DNA.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 74, No. 2. (February 1977), pp. 560-564.
    by AM Maxam, W Gilbert
    posted to sequencing by bozdagd on 2008-08-15 20:00:41 as **
  • DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A, Vol. 74, No. 12. (December 1977), pp. 5463-5467.
    by F Sanger, S Nicklen, AR Coulson
    posted to sequencing by bozdagd on 2008-08-15 19:58:16 as ** along with 2 people whrandom jwm
  • The early days of DNA sequences
    Nat Med, Vol. 7, No. 3. (March 2001), pp. 267-268.
    by Fred Sanger
    posted to sequencing review by bozdagd on 2008-08-15 19:56:05 as **
  • Advanced sequencing technologies: methods and goals.
    Nature reviews. Genetics, Vol. 5, No. 5. (May 2004), pp. 335-344.
    by J Shendure, RD Mitra, C Varma, GM Church
    posted to sequencing review chip-seq by bozdagd on 2008-08-15 19:55:01 as ** along with 1 person farhat
  • Next-generation sequencing transforms today's biology
    Nature Methods, Vol. 5, No. 1. (19 December 2007), pp. 16-18.
    by Stephan C Schuster
    posted to sequencing review chip-seq by bozdagd on 2008-08-15 19:49:22 as ** along with 5 people kmdaily jyuh yas balicea xingxu
  • Accurate Multiplex Polony Sequencing of an Evolved Bacterial Genome
    Science, Vol. 309, No. 5741. (09 September 2005), pp. 1728-1732.
    by Jay Shendure, Gregory J Porreca, Nikos B Reppas, Xiaoxia Lin, John P Mccutcheon, Abraham M Rosenbaum, Michael D Wang, Kun Zhang, Robi D Mitra, George M Church
    posted to sequencing chip-seq 454 by bozdagd on 2008-08-15 19:47:40 as ** along with 6 people and 2 groups arve balajis dchughes AaronDarling xingxu nhp G4ID Genetics-of-Gambling
  • Bioinformatics--an introduction for computer scientists
    ACM Comput. Surv., Vol. 36, No. 2. (June 2004), pp. 122-158.
    by Jacques Cohen
    posted to review by bozdagd on 2008-08-13 18:49:15 as ** along with 11 people and 3 groups quianominorleo neilernst malenitah2 asilva Ayest smithco eweaver afragop bigbossman mmuecke sugarexpletive CHISEL Complex_Real_Networks Plant-Tissue-Simulation
  • SOAP: short oligonucleotide alignment program.
    Bioinformatics (28 January 2008)
    by Ruiqiang Li, Yingrui Li, Karsten Kristiansen, Jun Wang
    posted to sequencing local-alignment algorithm by bozdagd on 2008-08-13 18:37:53 as ** along with 8 people waszak urgi caseybrown jyuh ghattem GustavoLacerda niallhaslam mdimon
  • Data handling strategies for high throughput pyrosequencers.
    BMC Bioinformatics, Vol. 8 Suppl 1 (2007)
    by GA Trombetti, RJ Bonnal, E Rizzi, G De Bellis, L Milanesi
    posted to sequencing chip-seq 454 by bozdagd on 2008-08-13 18:29:03 as ** along with 2 people ghattem GustavoLacerda
  • Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing
    BMC Genomics, Vol. 7 (23 August 2006), 216.
    by Robert Pinard, Alex de Winter, Gary J Sarkis, Mark B Gerstein, Karrie R Tartaro, Ramona N Plant, Michael Egholm, Jonathan M Rothberg, John H Leamon
    posted to sequencing chip-seq application 454 by bozdagd on 2008-08-13 18:27:32 as ** along with 3 people mcox jmeppley rabu
  • Accuracy and quality of massively-parallel DNA pyrosequencing
    Genome Biology, Vol. 8 (20 July 2007), R143.
    by Susan M Huse, Julie A Huber, Hilary G Morrison, Mitchell L Sogin, David M Welch
    posted to sequencing chip-seq 454 by bozdagd on 2008-08-13 18:25:20 as ** along with 8 people and 3 groups Olaf_Ilzins gpappas jmeppley mblwhoi grahamc azazello GustavoLacerda blobbybirdman Bioinformatics ParkinsonLab_at_MaRS gatech-compgenomics
  • Multiplex sequencing of paired-end ditags (MS-PET): a strategy for the ultra-high-throughput analysis of transcriptomes and genomes.
    Nucleic Acids Res, Vol. 34, No. 12. (2006)
    by P Ng, JJ Tan, HS Ooi, YL Lee, KP Chiu, MJ Fullwood, KG Srinivasan, C Perbost, L Du, WK Sung, CL Wei, Y Ruan
    posted to sequencing chip-seq application 454 by bozdagd on 2008-08-13 18:21:59 as ** along with 1 person jyuh
  • Global repeat discovery and estimation of genomic copy number in a large, complex genome using a high-throughput 454 sequence survey
    BMC Genomics, Vol. 8 (24 May 2007), 132.
    by Kankshita Swaminathan, Kranthi Varala, Matthew E Hudson
    posted to sequencing copy-number chip-seq application 454 by bozdagd on 2008-08-13 18:20:03 as ** along with 3 people and 2 groups ghattem GustavoLacerda tpreeprem BergmanLab gatech-compgenomics
  • Model-based analysis of tiling-arrays for ChIP-chip.
    Proc Natl Acad Sci U S A, Vol. 103, No. 33. (15 August 2006), pp. 12457-12462.
    by WE Johnson, W Li, CA Meyer, R Gottardo, JS Carroll, M Brown, XS Liu
    posted to copy-number chip-chip algorithm by bozdagd on 2008-08-13 18:17:17 as ** along with 5 people and 1 group bertelsen kengg nicholso talponer caseybrown Plantandetc
  • A global map of p53 transcription-factor binding sites in the human genome.
    Cell, Vol. 124, No. 1. (13 January 2006), pp. 207-219.
    by CL Wei, Q Wu, VB Vega, KP Chiu, P Ng, T Zhang, A Shahab, HC Yong, Y Fu, Z Weng, J Liu, XD Zhao, JL Chew, YL Lee, VA Kuznetsov, WK Sung, LD Miller, B Lim, ET Liu, Q Yu, HH Ng, Y Ruan
    posted to chip-chip application by bozdagd on 2008-08-13 18:06:21 as ** along with 10 people and 1 group maralena kaarsinogen jfr balajis tabu vega kengg jackjackjjj jtomasch karfunkel Plantandetc
  • Tandem repeats finder: a program to analyze DNA sequences.
    Nucleic Acids Res, Vol. 27, No. 2. (15 January 1999), pp. 573-580.
    by G Benson
    posted to copy-number by bozdagd on 2008-08-13 18:05:24 as ** along with 2 people timflutre urgi
  • Applications of DNA tiling arrays for whole-genome analysis.
    Genomics, Vol. 85, No. 1. (January 2005), pp. 1-15.
    by TC Mockler, S Chan, A Sundaresan, H Chen, SE Jacobsen, JR Ecker
    posted to review microarray application by bozdagd on 2008-08-13 18:00:31 as ** along with 4 people and 1 group jo_davies jwestbrook mdimon blackm0k King_Lab
  • DNA Sequencing with Solexa Technology
    by Illumina
    posted to sequencing chip-seq by bozdagd on 2008-08-13 17:56:27 as **
  • Whole-Genome Chromatin IP Sequencing (ChIP-Seq)
    by Illumina
    posted to sequencing chip-seq by bozdagd on 2008-08-13 17:52:42 as **
  • Genome-wide analysis of estrogen receptor binding sites
    Nature Genetics, Vol. 38, No. 11. (01 October 2006), pp. 1289-1297.
    by Jason S Carroll, Clifford A Meyer, Jun Song, Wei Li, Timothy R Geistlinger, Jérôme Eeckhoute, Alexander S Brodsky, Erika K Keeton, Kirsten C Fertuck, Giles F Hall, Qianben Wang, Stefan Bekiranov, Victor Sementchenko, Edward A Fox, Pamela A Silver, Thomas R Gingeras, Shirley X Liu, Myles Brown
    posted to chip-chip application by bozdagd on 2008-08-13 17:50:01 as ** along with 2 people jfr olympos
  • The Needleman-Wunsch algorithm for sequence alignment
    posted to sequencing presentation needleman-wunsch global-alignment algorithm by bozdagd on 2008-08-13 17:22:27 as **
  • Striped Smith-Waterman speeds database searches six times over other SIMD implementations.
    Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. 156-161.
    by M Farrar
    posted to smith-waterman local-alignment algorithm by bozdagd on 2008-08-13 17:19:38 as ** along with 1 person massivemayhem
  • Identification of common molecular subsequences.
    J Mol Biol, Vol. 147, No. 1. (25 March 1981), pp. 195-197.
    by TF Smith, MS Waterman
    posted to smith-waterman sequencing local-alignment algorithm by bozdagd on 2008-08-13 17:17:19 as ** along with 9 people newton1234 creswick vavi bicko dgront rabio cjeans incovoma sujaikumar
  • Improved tools for biological sequence comparison.
    Proc Natl Acad Sci U S A, Vol. 85, No. 8. (April 1988), pp. 2444-2448.
    by WR Pearson, DJ Lipman
    posted to sequencing local-alignment fasta algorithm by bozdagd on 2008-08-13 17:15:41 as ** along with 9 people and 2 groups Ema arcticrasta ffranca gurkanbebek bsmagic CitoJam lusk cjeans sujaikumar Bioinformatics bioinplant
  • Reducing the space requirement of suffix trees
    Softw. Pract. Exper., Vol. 29, No. 13. (November 1999), pp. 1149-1171.
    by Stefan Kurtz
    posted to suffix-tree by bozdagd on 2008-08-13 17:13:55 as **
  • A greedy algorithm for aligning DNA sequences.
    J Comput Biol, Vol. 7, No. 1-2. (r 2000), pp. 203-214.
    by Z Zhang, S Schwartz, L Wagner, W Miller
    posted to sequencing local-alignment blast algorithm by bozdagd on 2008-08-13 17:09:53 as ** along with 4 people benwei AaronDarling azazello sujaikumar
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