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blobbybirdman factorsmetabolism [35 articles]

最近 blobbybirdman さんのライブラリに追加された論文の中から タグ factorsmetabolism. You can also see everyone's factorsmetabolism.
  • REDUCE: An online tool for inferring cis-regulatory elements and transcriptional module activities from microarray data
    Nucleic Acids Res, Vol. 31, No. 13. (2003), pp. 3487-90.
    by C Roven, HJ Bussemaker
    posted to acid algorithms analysis analysismethods animals array binding cerevisiaegeneticsmetabolism database design dna drosophila expression factorsmetabolism gene genetic govt internet management melanogastergeneticsmetabolism messengermetabolism nucleic oligonucleotide phs profilingmethods regression regulatory rna saccharomyces sequence sequences sites software support systems transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:34 as **
  • Evaluation of computer tools for the prediction of transcription factor binding sites on genomic DNA
    In Silico Biol, Vol. 1, No. 1. (1998), pp. 21-8.
    by E Roulet, I Fisch, T Junier, P Bucher, N Mermod
    posted to algorithms base binding biological computer dnageneticsmetabolism factorsmetabolism govt humans in models non-us research sequence simulation sitesgenetics software support transcription vitro bibtex-import by blobbybirdman on 2007-10-09 17:56:34 as **
  • High-throughput SELEX SAGE method for quantitative modeling of transcription-factor binding sites
    Nat Biotechnol, Vol. 20, No. 8. (2002), pp. 831-5.
    by E Roulet, S Busso, AA Camargo, AJ Simpson, N Mermod, P Bucher
    posted to base binding biological biologymethods ccaat-enhancer-binding computational computer consensus dna-binding dnageneticsmetabolism elementsgenetics expression factorsmetabolism gene genome genomicsmethods govt ligands models non-us protein proteinsmetabolism regulation research response sequence sequencegenetics simulation sites specificity substrate support transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:34 as **
  • Genome-wide location and function of DNA binding proteins
    Science, Vol. 290, No. 5500. (2000), pp. 2306-9.
    by B Ren, F Robert, JJ Wyrick, O Aparicio, EG Jennings, I Simon, J Zeitlinger, J Schreiber, N Hannett, E Kanin, TL Volkert, CJ Wilson, SP Bell, RA Young
    posted to analysis array binding cell cerevisiae cerevisiaegeneticsmetabolismphysiology cycle dna dna-binding expression factorsmetabolism fungal fungalgeneticsmetabolism galactosemetabolism gene genes genetics genome govt non-us oligonucleotide peptidespharmacology phs profiling promoter proteins proteinsmetabolism regions regulation research saccharomyces sequence sites support trans-activation transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:32 as **
  • Location analysis of DNA-bound proteins at the whole-genome level: untangling transcriptional regulatory networks
    Bioessays, Vol. 23, No. 6. (2001), pp. 473-6.
    by B Nal, E Mohr, P Ferrier
    posted to cerevisiaegenetics dna-binding dnachemistrygeneticsmetabolism factorsmetabolism fungal genome govt non-us proteinsmetabolism research saccharomyces support transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:30 as **
  • Deciphering genetic regulatory codes: a challenge for functional genomics
    Proc Natl Acad Sci U S A, Vol. 99, No. 2. (2002), pp. 546-8.
    by AM Michelson
    posted to algorithms animals binding developmental drosophila elements enhancer expression factorsmetabolism gene genes genetic genetics genomics govt insect melanogasterembryologygenetics models non-us regulation regulator research sitesgenetics support transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:29 as **
  • Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes
    Nucleic Acids Res, Vol. 29, No. 3. (2001), pp. 774-82.
    by L Mccue, W Thompson, C Carmack, MP Ryan, JS Liu, V Derbyshire, CE Lawrence
    posted to acid alignment bacterial bacterialgenetics bacterialgeneticsmetabolism base binding coligenetics databases dna escherichia factorsmetabolism factual gammaproteobacteriagenetics genes genome govt homology nucleic phs phylogeny protein sequence sitesgenetics support transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:29 as **
  • Decoding cis-regulatory DNAs in the Drosophila genome
    Curr Opin Genet Dev, Vol. 12, No. 5. (2002), pp. 601-6.
    by M Markstein, M Levine
    posted to acid animals binding biology body computational drosophila factorsmetabolism family genes genetic genetics genome govt insect melanogasterembryologygeneticsmetabolism multigene nucleic patterninggenetics phs promoter regions regulator regulatory research sequences sitesgenetics support transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:28 as **
  • rVISTA 2.0: evolutionary analysis of transcription factor binding sites
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (2004), pp. W217-21.
    by GG Loots, I Ovcharenko
    posted to acid algorithms alignment analysis binding dna dnachemistrymetabolism evolution factorsmetabolism interface internet molecular nucleic regulatory sequence sequences sites software transcription user-computer bibtex-import by blobbybirdman on 2007-10-09 17:56:28 as **
  • A suite of web-based programs to search for transcriptional regulatory motifs
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (2004), pp. W204-7.
    by Y Liu, L Wei, S Batzoglou, DL Brutlag, JS Liu, XS Liu
    posted to acid algorithms binding dnachemistrymetabolism expression factorsmetabolism gene genetic interface internet nucleic regulation regulatory sequences sites software transcription user-computer bibtex-import by blobbybirdman on 2007-10-09 17:56:27 as **
  • An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments
    Nat Biotechnol, Vol. 20, No. 8. (2002), pp. 835-9.
    by XS Liu, DL Brutlag, JS Liu
    posted to algorithms analysismethods and array base binding biologymethods cerevisiae cerevisiaegenetics chromatingeneticsmetabolism computational dna-binding dnageneticsmetabolism elementsgenetics expression factors factorsmetabolism fungalgenetics gene genes govt internet non-phs oligonucleotide phs precipitin protein proteinsmetabolism regulation response saccharomyces sensitivity sequence sites software specificity support telomere-binding telomeregeneticsmetabolism testsmethods time transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:27 as **
  • Identification of the binding sites of regulatory proteins in bacterial genomes
    Proc Natl Acad Sci U S A, Vol. 99, No. 18. (2002), pp. 11772-7.
    by H Li, V Rhodius, C Gross, ED Siggia
    posted to algorithms bacterial base binding dna factorsmetabolism genome govt non-phs non-us phs proteinsmetabolism research sequence sites support transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:26 as **
  • Enrichment of regulatory signals in conserved non-coding genomic sequence
    Bioinformatics, Vol. 17, No. 10. (2001), pp. 871-7.
    by S Levy, S Hannenhalli, C Workman
    posted to algorithms alignmentstatistics analysis animals binding biology computational conserved data dnageneticsmetabolism dnastatistics factorsmetabolism genes genetic genome govt human mice models non-us numerical regulator sequence sitesgenetics support transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:26 as **
  • Chromatin structure and transcription
    Annu Rev Cell Biol, Vol. 8 (1992), pp. 563-87.
    by RD Kornberg, Y Lorch
    posted to acid animals binding cerevisiaegeneticsmetabolism chromatinmetabolismultrastructure conformation dna-binding dnagenetics expression factorsmetabolism fungal gene genes genetic genetics histoneschemistry mammary models molecular mousegenetics nucleic nucleosomesultrastructure promoter protein proteinsgeneticsmetabolism proteinsmetabolism regions regulation regulatory repetitive saccharomyces sequences structural transcription tumor virus bibtex-import by blobbybirdman on 2007-10-09 17:56:25 as **
  • Combining frequency and positional information to predict transcription factor binding sites
    Bioinformatics, Vol. 17, No. 11. (2001), pp. 1019-26.
    by SM Kielbasa, JO Korbel, D Beule, J Schuchhardt, H Herzel
    posted to algorithms base binding biology cerevisiaegeneticsmetabolism computational databases dna dnageneticsmetabolism factorsmetabolism fungalgeneticsmetabolism genetic genetics human promoter regions saccharomyces sequence sitesgenetics software transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:25 as **
  • Sequencing and comparison of yeast species to identify genes and regulatory elements
    Nature, Vol. 423, No. 6937. (2003), pp. 241-54.
    by M Kellis, N Patterson, M Endrizzi, B Birren, ES Lander
    posted to acidgenetics alignment analysis base binding cerevisiae cerevisiaegenetics comparative conserved data dna elementsgenetics evolution expression factorsmetabolism framesgenetics fungal fungalgenetics gene genes genome genomics humans intronsgenetics molecular nucleic open proteinschemistrygenetics proteinsmetabolism reading regulation regulatory response saccharomyces saccharomycesgenetics sequence sequencegenetics sequences sites species specificity study transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:24 as **
  • TRANSCompel: a database on composite regulatory elements in eukaryotic genes
    Nucleic Acids Res, Vol. 30, No. 1. (2002), pp. 332-4.
    by Kel OV Margoulis, AE Kel, I Reuter, IV Deineko, E Wingender
    posted to acid and animals binding cellsmetabolism databases eukaryotic factorsmetabolism genetic genetics govt human information integration internet macromolecular non-us nucleic promoter regions regulatory retrieval sequences sites storage support systems trans-activation transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:24 as **
  • MATCH: A tool for searching transcription factor binding sites in DNA sequences
    Nucleic Acids Res, Vol. 31, No. 13. (2003), pp. 3576-9.
    by AE Kel, E Gossling, I Reuter, E Cheremushkin, Kel OV Margoulis, E Wingender
    posted to acid algorithms analysis binding dnamethods factorsmetabolism govt interface internet non-us nucleic regulatory sequence sequences sites software support transcription user-computer bibtex-import by blobbybirdman on 2007-10-09 17:56:24 as **
  • Automatic discovery of regulatory patterns in promoter regions based on whole cell expression data and functional annotation
    Bioinformatics, Vol. 16, No. 4. (2000), pp. 326-33.
    by LJ Jensen, S Knudsen
    posted to algorithms automation binding cerevisiaegenetics complexes cysteine endopeptidases expression factorsmetabolism gene genetics govt multienzyme non-us profilingmethods promoter regions saccharomyces sites support transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:23 as **
  • Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF
    Nature, Vol. 409, No. 6819. (2001), pp. 533-8.
    by VR Iyer, CE Horak, CS Scafe, D Botstein, M Snyder, PO Brown
    posted to analysis array binding cell cerevisiae cerevisiaegeneticsmetabolism cycle dna expression factorsmetabolism fungal fungalmetabolism gene govt non-us oligonucleotide phs precipitin proteins proteinsmetabolism regulation research saccharomyces sequence sites support tests transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:22 as **
  • Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae
    J Mol Biol, Vol. 296, No. 5. (2000), pp. 1205-14.
    by JD Hughes, PW Estep, S Tavazoie, GM Church
    posted to algorithms alignment base bias binding biologymethodsstatistics calibration cerevisiaegenetics codon computational data databases elementsgenetics epidemiology factorsmetabolism factual familygenetics framesgenetics fungal fungalgenetics genes genome initiatorgenetics multigene numerical of open reading reproducibility response results saccharomyces sequence sites software transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:22 as **
  • Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies
    J Mol Biol, Vol. 281, No. 5. (1998), pp. 827-42.
    by J van Helden, B Andre, Collado J Vides
    posted to acidgenetics algorithms binding cerevisiaegenetics communication computer computers dna-binding expression factorsmetabolism fungal fungalgenetics gene genes genome govt networks non-us nucleic oligodeoxyribonucleotidesanalysis proteinsgenetics regulation regulatory research saccharomyces sequences sitesgenetics support transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:21 as **
  • Computational technique for improvement of the position-weight matrices for the DNA/protein binding sites
    Nucleic Acids Res, Vol. 33, No. 7. (2005), pp. 2290-301.
    by NI Gershenzon, GD Stormo, IP Ioshikhes
    posted to algorithms analysis binding biologymethods computational dna-binding dnamethods elements factor factorsmetabolism genetics genome govt human humans non-us phs promoter proteinsmetabolism regions research response sequence sites sp1metabolism support transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:20 as **
  • Cluster-Buster: Finding dense clusters of motifs in DNA sequences
    Nucleic Acids Res, Vol. 31, No. 13. (2003), pp. 3666-8.
    by MC Frith, MC Li, Z Weng
    posted to acid analysis binding cluster code computer dnamethods factorsmetabolism genetic govt graphics human interface internet non-phs non-us nucleic phs regulatory sequence sequences sites software support transcription us user-computer bibtex-import by blobbybirdman on 2007-10-09 17:56:20 as **
  • Detection of cis-element clusters in higher eukaryotic DNA
    Bioinformatics, Vol. 17, No. 10. (2001), pp. 878-89.
    by MC Frith, U Hansen, Z Weng
    posted to algorithms analysis and animals binding biology chains cluster computational data dnageneticsmetabolism dnastatistics factorsmetabolism genes genetics genome govt human markov musclesmetabolism non-phs non-us numerical phs promoter regions regulator sensitivity sequence sitesgenetics software specificity support transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:20 as **
  • Detection of functional DNA motifs via statistical over-representation
    Nucleic Acids Res, Vol. 32, No. 4. (2004), pp. 1372-81.
    by MC Frith, Y Fu, L Yu, JF Chen, U Hansen, Z Weng
    posted to acid analysis animals binding comparative data dna-binding dnamethods dopaminephysiology drosophilagenetics factorsmetabolism genetics govt human interpretation livermetabolism muscle non-phs non-us nucleic phs promoter proteinsmetabolism regions regulatory sequence sequences sites skeletalmetabolism software statistical study support transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:19 as **
  • Discovery and modeling of transcriptional regulatory regions
    Curr Opin Biotechnol, Vol. 11, No. 1. (2000), pp. 19-24.
    by JW Fickett, WW Wasserman
    posted to acidgenetics animals base binding biology computational dna dna-binding factorsmetabolism footprinting geneticgenetics geneticsgenetics humans nucleic phylogeny promoter proteinsmetabolism regions regulatory sequence sequences sites transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:19 as **
  • Conserved E boxes function as part of the enhancer in hypersensitive site 2 of the beta-globin locus control region. Role of basic helix-loop-helix proteins
    J Biol Chem, Vol. 272, No. 1. (1997), pp. 369-78.
    by L Elnitski, W Miller, R Hardison
    posted to acid alignment base binding data developmental dna-binding elements enhancer expression factorsmetabolism gene genetics globinsgenetics govt helix-loop-helix homology human molecular motifs nuclear nucleic phs proteins proteinsmetabolism proto-oncogene regulation sequence sites support transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:18 as **
  • Theatre: A software tool for detailed comparative analysis and visualization of genomic sequence
    Nucleic Acids Res, Vol. 31, No. 13. (2003), pp. 3510-7.
    by YJ Edwards, TJ Carver, T Vavouri, M Frith, MJ Bishop, G Elgar
    posted to acid alignmentmethods analysis animals base binding components computer data dnamethods expression factorsmetabolism fishesgenetics gene genes genetics genomicsmethods graphics hamsters human interface internet mice molecular nucleic p53 promoter rats regions regulation repetitive sequence sequences sites software transcription user-computer bibtex-import by blobbybirdman on 2007-10-09 17:56:18 as **
  • NestedMICA: sensitive inference of over-represented motifs in nucleic acid sequence
    Nucleic Acids Res, Vol. 33, No. 5. (2005), pp. 1445-53.
    by TA Down, TJ Hubbard
    posted to acid analysis base bayes binding biologymethods chains comparative computational dnamethods factorsmetabolism govt humans markov myogenic non-us nucleic regulatory research sequence sequences sites software study support theorem transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:18 as **
  • Specification of cell fate in the sea urchin embryo: summary and some proposed mechanisms
    Development, Vol. 125, No. 17. (1998), pp. 3269-90.
    by EH Davidson, RA Cameron, A Ransick
    posted to animals biological blastomerescytology body cell chimera development developmental ectodermcytology endodermcytology expression factorsmetabolism female gene genes govt homeobox larvacytology male mesodermcytology models non-phs ovumcytology patterning phs polarity regulation sea signal support transcription transduction urchinsembryologygeneticsgrowth us bibtex-import by blobbybirdman on 2007-10-09 17:56:17 as **
  • From transcriptional regulation to aggressive behavior
    Behav Genet, Vol. 33, No. 5. (2003), pp. 549-62.
    by UM D'Souza, A Kel, F Sluyter
    posted to acid aggressionphysiology alignment animals base data elements enhancer exons expression factorsmetabolism gene genes genetic geneticgenetics genetics homology human introns mice models molecular nucleic promoter rats regions regulationgenetics sequence silencer transcription transcriptional bibtex-import by blobbybirdman on 2007-10-09 17:56:16 as **
  • Regulatory element detection using correlation with expression
    Nat Genet, Vol. 27, No. 2. (2001), pp. 167-71.
    by HJ Bussemaker, H Li, ED Siggia
    posted to acid algorithms binding cell cerevisiaecytologygenetics consensus cyclegenetics dna-binding expression factorsmetabolism fungal gene govt mcm1 models non-phs non-us nucleic protein proteinsmetabolism regulation regulatory saccharomyces sequence sequences sites support theoretical transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:14 as **
  • Additivity in protein-DNA interactions: how good an approximation is it?
    Nucleic Acids Res, Vol. 30, No. 20. (2002), pp. 4442-51.
    by PV Benos, ML Bulyk, GD Stormo
    posted to animals binding comparative dna-binding dnachemistrymetabolism entropy factorsmetabolism genes genetics govt mice models non-us nuclear operator phs protein proteinsanalysis proteinsmetabolism regions repressor research sites study support suppressor theoretical transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:11 as **
  • Toucan: deciphering the cis-regulatory logic of coregulated genes
    Nucleic Acids Res, Vol. 31, No. 6. (2003), pp. 1753-64.
    by S Aerts, G Thijs, B Coessens, M Staes, Y Moreau, B De Moor
    posted to algorithms binding biologymethods computational expression factorsmetabolism gene geneticsgenetics genome govt human livermetabolism musclesmetabolism non-us promoter regions regulationgenetics sitesgenetics software support transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:08 as **
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