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blobbybirdman analysis [34 articles]

最近 blobbybirdman さんのライブラリに追加された論文の中から タグ analysis. You can also see everyone's analysis.
  • REDUCE: An online tool for inferring cis-regulatory elements and transcriptional module activities from microarray data
    Nucleic Acids Res, Vol. 31, No. 13. (2003), pp. 3487-90.
    by C Roven, HJ Bussemaker
    posted to acid algorithms analysis analysismethods animals array binding cerevisiaegeneticsmetabolism database design dna drosophila expression factorsmetabolism gene genetic govt internet management melanogastergeneticsmetabolism messengermetabolism nucleic oligonucleotide phs profilingmethods regression regulatory rna saccharomyces sequence sequences sites software support systems transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:34 as **
  • Genome-wide location and function of DNA binding proteins
    Science, Vol. 290, No. 5500. (2000), pp. 2306-9.
    by B Ren, F Robert, JJ Wyrick, O Aparicio, EG Jennings, I Simon, J Zeitlinger, J Schreiber, N Hannett, E Kanin, TL Volkert, CJ Wilson, SP Bell, RA Young
    posted to analysis array binding cell cerevisiae cerevisiaegeneticsmetabolismphysiology cycle dna dna-binding expression factorsmetabolism fungal fungalgeneticsmetabolism galactosemetabolism gene genes genetics genome govt non-us oligonucleotide peptidespharmacology phs profiling promoter proteins proteinsmetabolism regions regulation research saccharomyces sequence sites support trans-activation transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:32 as **
  • Use of chromatin immunoprecipitation assays in genome-wide location analysis of mammalian transcription factors
    Methods Enzymol, Vol. 376 (2004), pp. 304-15.
    by B Ren, BD Dynlacht
    posted to analysis animals array chain chromatingeneticsmetabolism cross-linking dna-binding expression factorsgeneticsmetabolism gene genetics genome govt humans mammalsgenetics non-us oligonucleotide polymerase precipitin profiling promoter proteinsmetabolism reaction reagentsmetabolism regions research sequence support testsmethods transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:32 as **
  • Classification and knowledge discovery in protein databases
    J Biomed Inform, Vol. 37, No. 4. (2004), pp. 224-39.
    by P Radivojac, NV Chawla, AK Dunker, Z Obradovic
    posted to algorithms alignmentmethods analysis and artificial automatedmethods cluster comparative database databases govt information intelligence management non-phs of pattern phs protein proteinmethods proteinsanalysischemistryclassification recognition reproducibility research results retrievalmethods sensitivity sequence specificity storage study support systems us bibtex-import by blobbybirdman on 2007-10-09 17:56:32 as **
  • Motif discovery in heterogeneous sequence data
    Pac Symp Biocomput (2004), pp. 348-59.
    by A Prakash, M Blanchette, S Sinha, M Tompa
    posted to algorithms analysis animals binding biology caenorhabditis computational data dnastatistics elegansgenetics genes genetic genomicsstatistics govt helminth models non-phs non-us numerical phs regulator research sequence sitesgenetics support us bibtex-import by blobbybirdman on 2007-10-09 17:56:32 as **
  • A powerful non-homology method for the prediction of operons in prokaryotes
    Bioinformatics, Vol. 18 Suppl 1 (2002), pp. S329-36.
    by Moreno G Hagelsieb, Collado J Vides
    posted to acid algorithms amino analysis bacteriagenetics bacterial bacterialgenetics base cells chromosome comparative data dnamethods expression factorsgenetics gene genome govt homology mappingmethods molecular non-us operongenetics profilingmethods prokaryotic regulation research sequence study support transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:30 as **
  • rVISTA 2.0: evolutionary analysis of transcription factor binding sites
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (2004), pp. W217-21.
    by GG Loots, I Ovcharenko
    posted to acid algorithms alignment analysis binding dna dnachemistrymetabolism evolution factorsmetabolism interface internet molecular nucleic regulatory sequence sequences sites software transcription user-computer bibtex-import by blobbybirdman on 2007-10-09 17:56:28 as **
  • Enrichment of regulatory signals in conserved non-coding genomic sequence
    Bioinformatics, Vol. 17, No. 10. (2001), pp. 871-7.
    by S Levy, S Hannenhalli, C Workman
    posted to algorithms alignmentstatistics analysis animals binding biology computational conserved data dnageneticsmetabolism dnastatistics factorsmetabolism genes genetic genome govt human mice models non-us numerical regulator sequence sitesgenetics support transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:26 as **
  • Sequencing and comparison of yeast species to identify genes and regulatory elements
    Nature, Vol. 423, No. 6937. (2003), pp. 241-54.
    by M Kellis, N Patterson, M Endrizzi, B Birren, ES Lander
    posted to acidgenetics alignment analysis base binding cerevisiae cerevisiaegenetics comparative conserved data dna elementsgenetics evolution expression factorsmetabolism framesgenetics fungal fungalgenetics gene genes genome genomics humans intronsgenetics molecular nucleic open proteinschemistrygenetics proteinsmetabolism reading regulation regulatory response saccharomyces saccharomycesgenetics sequence sequencegenetics sequences sites species specificity study transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:24 as **
  • Identification of regulatory elements using a feature selection method
    Bioinformatics, Vol. 18, No. 9. (2002), pp. 1167-75.
    by S Keles, M van der Laan, MB Eisen
    posted to acid amino analysis analysismethods and array base carlo cerevisiaegenetics data dnamethods expression gene genetic govt method mitosisgenetics models molecular monte motifsgenetics of oligonucleotide pattern phs recognition regulationgenetics reproducibility results saccharomyces sensitivity sequence specificity statistical support us bibtex-import by blobbybirdman on 2007-10-09 17:56:24 as **
  • MATCH: A tool for searching transcription factor binding sites in DNA sequences
    Nucleic Acids Res, Vol. 31, No. 13. (2003), pp. 3576-9.
    by AE Kel, E Gossling, I Reuter, E Cheremushkin, Kel OV Margoulis, E Wingender
    posted to acid algorithms analysis binding dnamethods factorsmetabolism govt interface internet non-us nucleic regulatory sequence sequences sites software support transcription user-computer bibtex-import by blobbybirdman on 2007-10-09 17:56:24 as **
  • Subtle motifs: defining the limits of motif finding algorithms
    Bioinformatics, Vol. 18, No. 10. (2002), pp. 1382-90.
    by U Keich, PA Pevzner
    posted to acid acidgenetics algorithms alignmentmethods amino analysis analysismethods and base benchmarking comparative consensus control data dna dnagenetics dnamethods genetic models molecular motifsgenetics mutational nucleic of processes quality regulatory reproducibility results sensitivity sequence sequencegenetics sequences software specificity statistical stochastic study bibtex-import by blobbybirdman on 2007-10-09 17:56:23 as **
  • Finding motifs in the twilight zone
    Bioinformatics, Vol. 18, No. 10. (2002), pp. 1374-81.
    by U Keich, PA Pevzner
    posted to acid acidgenetics algorithms alignmentmethods amino analysis and base benchmarking cerevisiaegeneticsmetabolism coligeneticsmetabolism comparative consensus control data dna-binding dnagenetics dnamethods escherichia geneticsgenetics molecular motifsgenetics nucleic promoter proteinsgenetics quality regions regulatory saccharomyces sensitivity sequence sequencegenetics sequences specificity study bibtex-import by blobbybirdman on 2007-10-09 17:56:23 as **
  • BioOptimizer: a Bayesian scoring function approach to motif discovery
    Bioinformatics, Vol. 20, No. 10. (2004), pp. 1557-64.
    by ST Jensen, JS Liu
    posted to acid algorithms alignmentmethods amino analysis bayes binding comparative dnachemistry dnamethods factorschemistry govt motifs non-phs phs protein research sequence sites software study support theorem transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:23 as **
  • Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF
    Nature, Vol. 409, No. 6819. (2001), pp. 533-8.
    by VR Iyer, CE Horak, CS Scafe, D Botstein, M Snyder, PO Brown
    posted to analysis array binding cell cerevisiae cerevisiaegeneticsmetabolism cycle dna expression factorsmetabolism fungal fungalmetabolism gene govt non-us oligonucleotide phs precipitin proteins proteinsmetabolism regulation research saccharomyces sequence sites support tests transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:22 as **
  • Distribution patterns of over-represented k-mers in non-coding yeast DNA
    Bioinformatics, Vol. 18, No. 4. (2002), pp. 513-28.
    by S Hampson, D Kibler, P Baldi
    posted to acid amino analysis and array base cluster conserved data databases dnamethodsstatistics expression fungal gene genetic genome govt homology models molecular motifsgenetics non-us nucleic numerical of oligonucleotide pattern recognition regulationgenetics reproducibility results sensitivity sequence sequencegenetics specificity statistical support yeastsgenetics bibtex-import by blobbybirdman on 2007-10-09 17:56:21 as **
  • Analysis of yeast's ORF upstream regions by parallel processing, microarrays, and computational methods
    Proc Int Conf Intell Syst Mol Biol, Vol. 8 (2000), pp. 190-201.
    by S Hampson, P Baldi, D Kibler, SB Sandmeyer
    posted to analysis array chains computer dnamethods frames fungal genome govt markov non-us oligonucleotide open reading sequence simulation statistics support bibtex-import by blobbybirdman on 2007-10-09 17:56:21 as **
  • Distinctive sequence features in protein coding genic non-coding, and intergenic human DNA
    J Mol Biol, Vol. 253, No. 1. (1995), pp. 51-60.
    by R Guigo, JW Fickett
    posted to algorithms analysis base composition databases discriminant dnagenetics factual framesgenetics genesgenetics govt human non-phs open phs proteinsgenetics reading sequencegenetics support us bibtex-import by blobbybirdman on 2007-10-09 17:56:21 as **
  • MatrixPlot: visualizing sequence constraints
    Bioinformatics, Vol. 15, No. 9. (1999), pp. 769-70.
    by J Gorodkin, HH Staerfeldt, O Lund, S Brunak
    posted to acidschemistry alignment analysis govt non-us nucleic protein proteinschemistry sequence software support bibtex-import by blobbybirdman on 2007-10-09 17:56:21 as **
  • Computational technique for improvement of the position-weight matrices for the DNA/protein binding sites
    Nucleic Acids Res, Vol. 33, No. 7. (2005), pp. 2290-301.
    by NI Gershenzon, GD Stormo, IP Ioshikhes
    posted to algorithms analysis binding biologymethods computational dna-binding dnamethods elements factor factorsmetabolism genetics genome govt human humans non-us phs promoter proteinsmetabolism regions research response sequence sites sp1metabolism support transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:20 as **
  • Statistical significance of clusters of motifs represented by position specific scoring matrices in nucleotide sequences
    Nucleic Acids Res, Vol. 30, No. 14. (2002), pp. 3214-24.
    by MC Frith, JL Spouge, U Hansen, Z Weng
    posted to acidgenetics algorithms analysis comparative dnamethods geneticsgenetics govt human initiation models non-phs non-us nucleic of phs promoter regions regulatory reproducibility results sequence sequences site statistical study support transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:20 as **
  • Cluster-Buster: Finding dense clusters of motifs in DNA sequences
    Nucleic Acids Res, Vol. 31, No. 13. (2003), pp. 3666-8.
    by MC Frith, MC Li, Z Weng
    posted to acid analysis binding cluster code computer dnamethods factorsmetabolism genetic govt graphics human interface internet non-phs non-us nucleic phs regulatory sequence sequences sites software support transcription us user-computer bibtex-import by blobbybirdman on 2007-10-09 17:56:20 as **
  • Detection of cis-element clusters in higher eukaryotic DNA
    Bioinformatics, Vol. 17, No. 10. (2001), pp. 878-89.
    by MC Frith, U Hansen, Z Weng
    posted to algorithms analysis and animals binding biology chains cluster computational data dnageneticsmetabolism dnastatistics factorsmetabolism genes genetics genome govt human markov musclesmetabolism non-phs non-us numerical phs promoter regions regulator sensitivity sequence sitesgenetics software specificity support transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:20 as **
  • Detection of functional DNA motifs via statistical over-representation
    Nucleic Acids Res, Vol. 32, No. 4. (2004), pp. 1372-81.
    by MC Frith, Y Fu, L Yu, JF Chen, U Hansen, Z Weng
    posted to acid analysis animals binding comparative data dna-binding dnamethods dopaminephysiology drosophilagenetics factorsmetabolism genetics govt human interpretation livermetabolism muscle non-phs non-us nucleic phs promoter proteinsmetabolism regions regulatory sequence sequences sites skeletalmetabolism software statistical study support transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:19 as **
  • Eukaryotic promoter recognition
    Genome Res, Vol. 7, No. 9. (1997), pp. 861-78.
    by JW Fickett, AG Hatzigeorgiou
    posted to algorithms analysis animals cellschemistryultrastructure chromosome data dna eukaryotic expression gene genetic geneticsgenetics govt human mapping molecular non-us phs promoter regions sequence software support transcription translation us bibtex-import by blobbybirdman on 2007-10-09 17:56:19 as **
  • Theatre: A software tool for detailed comparative analysis and visualization of genomic sequence
    Nucleic Acids Res, Vol. 31, No. 13. (2003), pp. 3510-7.
    by YJ Edwards, TJ Carver, T Vavouri, M Frith, MJ Bishop, G Elgar
    posted to acid alignmentmethods analysis animals base binding components computer data dnamethods expression factorsmetabolism fishesgenetics gene genes genetics genomicsmethods graphics hamsters human interface internet mice molecular nucleic p53 promoter rats regions regulation repetitive sequence sequences sites software transcription user-computer bibtex-import by blobbybirdman on 2007-10-09 17:56:18 as **
  • NestedMICA: sensitive inference of over-represented motifs in nucleic acid sequence
    Nucleic Acids Res, Vol. 33, No. 5. (2005), pp. 1445-53.
    by TA Down, TJ Hubbard
    posted to acid analysis base bayes binding biologymethods chains comparative computational dnamethods factorsmetabolism govt humans markov myogenic non-us nucleic regulatory research sequence sequences sites software study support theorem transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:18 as **
  • Ligation-mediated PCR for quantitative in vivo footprinting
    Nat Biotechnol, Vol. 18, No. 10. (2000), pp. 1108-11.
    by SM Dai, HH Chen, C Chang, AD Riggs, SD Flanagan
    posted to analysis and animals automation cells chain cho damagegenetics dna dnamethods dyes factors fluorescent footprintingmethods genes geneticsgenetics govt hamsters hela humans infrared kinasegenetics ligasesmetabolism methylation of p53genetics phosphoglycerate phs polymerase primersgenetics promoter rays reactionmethods regions repairgenetics reproducibility research results robotics sensitivity sequence specificity support time ultraviolet us bibtex-import by blobbybirdman on 2007-10-09 17:56:17 as **
  • MAVID multiple alignment server
    Nucleic Acids Res, Vol. 31, No. 13. (2003), pp. 3525-6.
    by N Bray, L Pachter
    posted to alignmentmethods analysis animals base conserved data dnamethods genomicsmethods human internet mice molecular phylogeny rats sequence software takifugugenetics bibtex-import by blobbybirdman on 2007-10-09 17:56:13 as **
  • FootPrinter: A program designed for phylogenetic footprinting
    Nucleic Acids Res, Vol. 31, No. 13. (2003), pp. 3840-2.
    by M Blanchette, M Tompa
    posted to acid algorithms analysis conserved dnamethods govt homology interface internet non-phs non-us nucleic phs phylogeny regulatory research sequence sequences software support us user-computer bibtex-import by blobbybirdman on 2007-10-09 17:56:12 as **
  • Evaluation of thresholds for the detection of binding sites for regulatory proteins in Escherichia coli K12 DNA
    Genome Biol, Vol. 3, No. 3. (2002)
    by Benitez E Bellon, Moreno G Hagelsieb, Collado J Vides
    posted to alignmentmethods analysis bacterial bacterialgeneticsmetabolism binding coli coligenetics comparative databases dna dna-binding dnamethods endopeptidasesmetabolism escherichia genetic govt non-us proteinsmetabolism regulongenetics repressor research sequence serine sitesgenetics study support bibtex-import by blobbybirdman on 2007-10-09 17:56:11 as **
  • SNPs in putative regulatory regions identified by human mouse comparative sequencing and transcription factor binding site data
    Mamm Genome, Vol. 13, No. 10. (2002), pp. 554-7.
    by P Banerjee, M Bahlo, JR Schwartz, GG Loots, KA Houston, I Dubchak, TP Speed, EM Rubin
    posted to acidgenetics analysis animals binding databases dna dnageneticsmetabolism factorsgeneticsmetabolism factual govt humans mice non-phs nucleic nucleotide phs polymorphism regulatory research sequence sequences single sitesgenetics support transcription us bibtex-import by blobbybirdman on 2007-10-09 17:56:10 as **
  • Fitting a mixture model by expectation maximization to discover motifs in biopolymers
    Proc Int Conf Intell Syst Mol Biol, Vol. 2 (1994), pp. 28-36.
    by TL Bailey, C Elkan
    posted to algorithms analysis animals biopolymerschemistry govt humans models non-phs phs research sequence support theoretical us bibtex-import by blobbybirdman on 2007-10-09 17:56:10 as **
  • Transcription binding site prediction using Markov models.
    J Bioinform Comput Biol, Vol. 4, No. 2. (Apr 2006), pp. 425-441.
    by Irina Abnizova, Alistair G Rust, Mark Robinson, Rene T Boekhorst, Walter R Gilks
    posted to acid alignment analysis artificial automated binding chains chromosome computer dna factors genetic intelligence mapping markov models nucleic pattern protein recognition regulatory sequence sequences simulation sites statistical transcription bibtex-import by blobbybirdman on 2007-10-09 17:56:08 as **
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