新規登録 | ログイン | FAQ      [?] 
Recent | Unread | Search | Authors | Tags | Export

bilab library [52 articles]

最近 bilab さんのライブラリ .
  • The Solvation Interface is a Determining Factor in Peptide Conformational Preferences
    Journal of Molecular Biology, Vol. 356, No. 1. (10 February 2006), pp. 248-256.
    by Eric J Sorin, Young M Rhee, Michael R Shirts, Vijay S Pande
    posted to folding by bilab on 2006-05-10 09:18:07 as **
  • Sub-microsecond Protein Folding
    Journal of Molecular Biology, Vol. In Press, Corrected Proof
    by Jan Kubelka, Thang K Chiu, David R Davies, William A Eaton, James Hofrichter
    posted to folding by bilab on 2006-05-02 11:34:52 as **
  • Reaction coordinates and rates from transition paths.
    Proc Natl Acad Sci U S A, Vol. 102, No. 19. (10 May 2005), pp. 6732-6737.
    by RB Best, G Hummer
    posted to folding by bilab on 2006-05-02 08:27:39 as ** along with 3 people apaydin mtw jlh64
  • Exploring reaction pathways with transition path and umbrella sampling: application to methyl maltoside.
    J Chem Phys, Vol. 124, No. 11. (21 March 2006)
    by RJ Dimelow, RA Bryce, AJ Masters, IH Hillier, NA Burton
    posted to function by bilab on 2006-05-02 08:26:42 as ** along with 1 person ruvido
  • In Silico Discovery of beta-Secretase Inhibitors.
    J Am Chem Soc, Vol. 128, No. 16. (26 April 2006), pp. 5436-5443.
    by D Huang, U Lüthi, P Kolb, M Cecchini, A Barberis, A Caflisch
    posted to function by bilab on 2006-05-02 08:24:02 as **
  • Network and graph analyses of folding free energy surfaces
    Current Opinion in Structural Biology, Vol. 16, No. 1. (February 2006), pp. 71-78.
    by Amedeo Caflisch
    posted to folding by bilab on 2006-05-02 08:23:26 as ** along with 4 people apaydin mtw jlh64 Diego_Prada
  • Coupled folding and binding with alpha-helix-forming molecular recognition elements.
    Biochemistry, Vol. 44, No. 37. (20 September 2005), pp. 12454-12470.
    by CJ Oldfield, Y Cheng, MS Cortese, P Romero, VN Uversky, AK Dunker
    posted to function by bilab on 2006-05-02 08:10:15 as **
  • Conformational Diversity of Ligands Bound to Proteins
    Journal of Molecular Biology, Vol. 356, No. 4. (3 March 2006), pp. 928-944.
    by Gareth R Stockwell, Janet M Thornton
    posted to docking by bilab on 2006-05-02 08:04:26 as ** along with 4 people BragilMassoud apaydin kuhn grottenolm
  • A method for localizing ligand binding pockets in protein structures.
    Proteins, Vol. 62, No. 2. (1 February 2006), pp. 479-488.
    by F Glaser, RJ Morris, RJ Najmanovich, RA Laskowski, JM Thornton
    posted to docking by bilab on 2006-05-02 08:03:08 as ** along with 3 people tjimenez nickolay sriram_s
  • Hot regions in protein--protein interactions: the organization and contribution of structurally conserved hot spot residues.
    J Mol Biol, Vol. 345, No. 5. (4 February 2005), pp. 1281-1294.
    by O Keskin, B Ma, R Nussinov
    posted to docking by bilab on 2006-05-02 08:01:36 as ** along with 8 people and 2 groups mdimmic ana barry baaden okarsligil bicko j3xucite xz structural_bioinformatics Bioinformatics
  • Evolutionary trace report maker: a new type of service for comparative analysis of proteins.
    Bioinformatics (27 April 2006)
    by I Mihalek, I Res, O Lichtarge
    posted to evolution by bilab on 2006-05-02 05:51:24 as ** along with 1 person BragilMassoud
  • Ribosome motions modulate electrostatic properties.
    Biopolymers, Vol. 74, No. 6. (15 August 2004), pp. 423-431.
    by J Trylska, R Konecny, F Tama, CL Brooks, JA McCammon
    posted to function by bilab on 2006-05-01 18:07:16 as ** along with 1 person and 1 group anita structure-bii
  • Symmetry, Form, and Shape: Guiding Principles for Robustness in Macromolecular Machines.
    Annu Rev Biophys Biomol Struct (13 January 2006)
    by Florence Tama, Charles L L Brooks Iii
    posted to function by bilab on 2006-05-01 18:06:05 as **
  • Hidden complexity of free energy surfaces for peptide (protein) folding.
    Proc Natl Acad Sci U S A, Vol. 101, No. 41. (12 October 2004), pp. 14766-14770.
    by SV Krivov, M Karplus
    posted to folding by bilab on 2006-05-01 18:05:43 as ** along with 4 people apaydin dimka Diego_Prada Fernando_FF
  • Folding of Ubiquitin: A Simple Model Describes the Strange Kinetics.
    J Phys Chem B Condens Matter Mater Surf Interfaces Biophys, Vol. 110, No. 17. (4 May 2006), pp. 8865-8869.
    by Sergei F Chekmarev, Sergei V Krivov, Martin Karplus
    posted to folding by bilab on 2006-05-01 17:59:19 as **
  • Molecular dynamics and protein function.
    Proc Natl Acad Sci U S A, Vol. 102, No. 19. (10 May 2005), pp. 6679-6685.
    by M Karplus, J Kuriyan
    posted to function by bilab on 2006-05-01 17:57:50 as ** along with 3 people apaydin allmensch RamuAnandakrishnan
  • De novo protein design: towards fully automated sequence selection.
    J Mol Biol, Vol. 273, No. 4. (7 November 1997), pp. 789-796.
    by BI Dahiyat, CA Sarisky, SL Mayo
    posted to design by bilab on 2006-05-01 17:53:49 as **
  • Engineered antibody Fc variants with enhanced effector function.
    Proc Natl Acad Sci U S A, Vol. 103, No. 11. (14 March 2006), pp. 4005-4010.
    by GA Lazar, W Dang, S Karki, O Vafa, JS Peng, L Hyun, C Chan, HS Chung, A Eivazi, SC Yoder, J Vielmetter, DF Carmichael, RJ Hayes, BI Dahiyat
    posted to function by bilab on 2006-05-01 17:44:41 as ** along with 1 person msuarezdiez
  • The burial of solvent-accessible surface area is a predictor of polypeptide folding and misfolding as a function of chain elongation.
    J Am Chem Soc, Vol. 127, No. 45. (16 November 2005), pp. 15690-15691.
    by N Kurt, S Cavagnero
    posted to design by bilab on 2006-05-01 12:39:29 as **
  • In quest of an empirical potential for protein structure prediction.
    Curr Opin Struct Biol (6 March 2006)
    by Jeffrey Skolnick
    posted to prediction structure by bilab on 2006-05-01 12:36:18 as ** along with 3 people BragilMassoud nigham chad_davis
  • Ensemble versus single-molecule protein unfolding.
    Proc Natl Acad Sci U S A, Vol. 102, No. 38. (20 September 2005), pp. 13445-13450.
    by R Day, V Daggett
    posted to folding by bilab on 2006-05-01 12:34:46 as ** along with 2 people choonpeng hmk
  • The present view of the mechanism of protein folding.
    Nat Rev Mol Cell Biol, Vol. 4, No. 6. (June 2003), pp. 497-502.
    by V Daggett, A Fersht
    posted to folding by bilab on 2006-05-01 12:33:18 as ** along with 3 people and 2 groups ana okarsligil mirzazadeh structural_bioinformatics Bioinformatics
  • Kinetic Definition of Protein Folding Transition State Ensembles and Reaction Coordinates.
    Biophys J (14 April 2006)
    by Christopher D D Snow, Young Min M Rhee, Vijay S S Pande
    posted to folding by bilab on 2006-05-01 12:29:36 as ** along with 1 person allmensch
  • Folding-based molecular simulations reveal mechanisms of the rotary motor F1-ATPase.
    Proc Natl Acad Sci U S A, Vol. 103, No. 14. (4 April 2006), pp. 5367-5372.
    by N Koga, S Takada
    posted to folding by bilab on 2006-05-01 12:26:34 as ** along with 1 person choonpeng
  • Molecular mechanism for stabilizing a short helical peptide studied by generalized-ensemble simulations with explicit solvent.
    Biophys J, Vol. 88, No. 5. (May 2005), pp. 3180-3190.
    by Y Sugita, Y Okamoto
    posted to folding by bilab on 2006-05-01 12:24:08 as ** along with 2 people jvf666 rulix
  • Protonation of the acidic residues in the transmembrane cation-binding sites of the ca(2+) pump.
    J Am Chem Soc, Vol. 127, No. 17. (4 May 2005), pp. 6150-6151.
    by Y Sugita, N Miyashita, M Ikeguchi, A Kidera, C Toyoshima
    posted to function by bilab on 2006-05-01 12:22:36 as **
  • Atomically detailed description of the unfolding of alpha-lactalbumin by the combined use of experiments and simulations.
    J Mol Biol, Vol. 354, No. 1. (18 November 2005), pp. 164-172.
    by T Oroguchi, M Ikeguchi, K Saeki, K Kamagata, Y Sawano, M Tanokura, A Kidera, K Kuwajima
    posted to folding by bilab on 2006-05-01 12:20:37 as ** along with 1 person choonpeng
  • Native protein sequences are designed to destabilize folding intermediates.
    Biochemistry, Vol. 45, No. 8. (28 February 2006), pp. 2488-2492.
    by Y Isogai
    posted to design by bilab on 2006-05-01 12:18:31 as ** along with 1 person and 1 group nknii TCR_Signaling
  • GASH: an improved algorithm for maximizing the number of equivalent residues between two protein structures.
    BMC Bioinformatics, Vol. 6 (2005)
    by DM Standley, H Toh, H Nakamura
    posted to algorithm by bilab on 2006-05-01 12:15:23 as ** along with 1 person and 1 group caporaso biomedical-nlp
  • The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships.
    Bioinformatics, Vol. 21, No. 17. (1 September 2005), pp. 3482-3489.
    by T Sato, Y Yamanishi, M Kanehisa, H Toh
    posted to evolution by bilab on 2006-05-01 12:14:27 as ** along with 2 people bioinfo cjeans
  • The 3D profile method for identifying fibril-forming segments of proteins.
    Proc Natl Acad Sci U S A, Vol. 103, No. 11. (14 March 2006), pp. 4074-4078.
    by MJ Thompson, SA Sievers, J Karanicolas, MI Ivanova, D Baker, D Eisenberg
    posted to algorithm by bilab on 2006-05-01 12:13:52 as **
  • Atomic-level description of amyloid beta-dimer formation.
    J Am Chem Soc, Vol. 128, No. 7. (22 February 2006), pp. 2158-2159.
    by S Gnanakaran, R Nussinov, AE García
    posted to folding by bilab on 2006-05-01 12:11:11 as **
  • Simulating movement of tRNA into the ribosome during decoding.
    Proc Natl Acad Sci U S A, Vol. 102, No. 44. (1 November 2005), pp. 15854-15859.
    by KY Sanbonmatsu, S Joseph, CS Tung
    posted to function by bilab on 2006-05-01 12:09:47 as ** along with 2 people perrywoo ffranca
  • Physically realistic homology models built with ROSETTA can be more accurate than their templates.
    Proc Natl Acad Sci U S A, Vol. 103, No. 14. (4 April 2006), pp. 5361-5366.
    by KM Misura, D Chivian, CA Rohl, DE Kim, D Baker
    posted to prediction structure by bilab on 2006-05-01 12:08:50 as ** along with 4 people jwm balajis dgront BioNica
  • Generation of native-like protein structures from limited NMR data, modern force fields and advanced conformational sampling
    Journal of Biomolecular NMR, Vol. 31, No. 1. (January 2005), pp. 59-64.
    by Jianhan Chen, Hyung-Sik Won, Wonpil Im, H Dyson, Charles Brooks
    posted to refinement by bilab on 2006-05-01 12:05:55 as ** along with 1 person and 2 groups barry structural_bioinformatics Bioinformatics
  • Refinement of NMR structures using implicit solvent and advanced sampling techniques.
    J Am Chem Soc, Vol. 126, No. 49. (15 December 2004), pp. 16038-16047.
    by J Chen, W Im, CL Brooks
    posted to refinement by bilab on 2006-05-01 12:04:57 as ** along with 1 person baaden
  • GROMACS: fast, flexible, and free.
    J Comput Chem, Vol. 26, No. 16. (December 2005), pp. 1701-1718.
    by D Van Der Spoel, E Lindahl, B Hess, G Groenhof, AE Mark, HJ Berendsen
    posted to software by bilab on 2006-05-01 12:03:19 as ** along with 8 people and 2 groups dimka jwm ttjoseph rabio Dinler tji softsimu ashaytan Radiation_Damage Stressosome
  • Molecular dynamics studies of the archaeal translocon.
    Biophys J (13 January 2006)
    by James C C Gumbart, Klaus Schulten
    posted to function by bilab on 2006-05-01 12:02:32 as ** along with 1 person ruudvanleeuwen
  • Scalable molecular dynamics with NAMD.
    J Comput Chem, Vol. 26, No. 16. (December 2005), pp. 1781-1802.
    by JC Phillips, R Braun, W Wang, J Gumbart, E Tajkhorshid, E Villa, C Chipot, RD Skeel, L Kalé, K Schulten
    posted to software by bilab on 2006-05-01 12:01:18 as ** along with 7 people and 5 groups dimka jwm ttjoseph sangeetha yoel_rf wilsoros sobolevnrm Radiation_Damage Stressosome Bioinformatics insilicodrug baker-group
  • Folding Cooperativity in a Three-stranded beta-Sheet Model.
    J Mol Biol, Vol. 352, No. 2. (16 September 2005), pp. 370-381.
    by DR Roe, V Hornak, C Simmerling
    posted to folding by bilab on 2006-05-01 11:59:29 as ** along with 1 person fjc1
  • A multistep approach to structure-based drug design: studying ligand binding at the human neutrophil elastase.
    J Med Chem, Vol. 49, No. 6. (23 March 2006), pp. 1837-1844.
    by T Steinbrecher, DA Case, A Labahn
    posted to function by bilab on 2006-05-01 11:58:50 as **
  • All-atom structure prediction and folding simulations of a stable protein.
    J Am Chem Soc, Vol. 124, No. 38. (25 September 2002), pp. 11258-11259.
    by C Simmerling, B Strockbine, AE Roitberg
    posted to folding by bilab on 2006-05-01 11:56:09 as ** along with 2 people fjc1 allmensch
  • The Amber biomolecular simulation programs.
    J Comput Chem, Vol. 26, No. 16. (December 2005), pp. 1668-1688.
    by DA Case, TE Cheatham, T Darden, H Gohlke, R Luo, KM Merz, A Onufriev, C Simmerling, B Wang, RJ Woods
    posted to software by bilab on 2006-05-01 11:54:55 as ** along with 7 people and 3 groups lna jwm simone ttjoseph xdeupi tovrstra RamuAnandakrishnan Radiation_Damage Stressosome LabCompMed
  • Effective function annotation through catalytic residue conservation.
    Proc Natl Acad Sci U S A (21 July 2005)
    by Richard A A George, Ruth V V Spriggs, Gail J J Bartlett, Alex Gutteridge, Malcolm W W Macarthur, Craig T T Porter, Bissan Al-Lazikani, Janet M M Thornton, Mark B B Swindells
    posted to evolution by bilab on 2006-05-01 11:54:03 as ** along with 5 people and 1 group chrn Einat alexg gbart tny structural_bioinformatics
  • An Analysis of Intron Positions in Relation to Nucleotides, Amino Acids, and Protein Secondary Structure.
    J Mol Biol (29 March 2006)
    by Gordon S S Whamond, Janet M M Thornton
    posted to evolution by bilab on 2006-05-01 11:52:55 as **
  • Ab initio molecular dynamics with discrete variable representation basis sets: techniques and application to liquid water.
    J Phys Chem A Mol Spectrosc Kinet Environ Gen Theory, Vol. 110, No. 16. (27 April 2006), pp. 5549-5560.
    by HS Lee, ME Tuckerman
    posted to algorithm by bilab on 2006-05-01 11:51:27 as **
  • Potentials of mean force for acetylcholine unbinding from the alpha7 nicotinic acetylcholine receptor ligand-binding domain [j. Am. Chem. Soc. 2006, 128, 3019-3026].
    J Am Chem Soc, Vol. 128, No. 13. (5 April 2006)
    by D Zhang, J Gillingsrud, JA McCammon
    posted to function by bilab on 2006-05-01 11:50:37 as **
  • Coupling hydrophobicity, dispersion, and electrostatics in continuum solvent models.
    Phys Rev Lett, Vol. 96, No. 8. (3 March 2006)
    by J Dzubiella, JM Swanson, JA McCammon
    posted to algorithm by bilab on 2006-05-01 11:49:51 as **
  • Electrostatic properties of cowpea chlorotic mottle virus and cucumber mosaic virus capsids.
    Biopolymers, Vol. 82, No. 2. (June 2006), pp. 106-120.
    by R Konecny, J Trylska, F Tama, D Zhang, NA Baker, CL Brooks, JA McCammon
    posted to function by bilab on 2006-05-01 11:48:59 as **
  • Balancing solvation and intramolecular interactions: toward a consistent generalized Born force field.
    J Am Chem Soc, Vol. 128, No. 11. (22 March 2006), pp. 3728-3736.
    by J Chen, W Im, CL Brooks
    posted to algorithm by bilab on 2006-05-01 11:48:15 as **
    • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/user/bilab

    Result page: 1 2 Next RIS BibTeX RSS
    CiteULike organises scholarly (or academic) papers or literature and provides bibliographic (which means it makes bibliographies) for universities and higher education establishments. It helps undergraduates and postgraduates. People studying for PhDs or in postdoctoral (postdoc) positions. The service is similar in scope to EndNote or RefWorks or any other reference manager like BibTeX, but it is a social bookmarking service for scientists and humanities researchers.