NCI: A server to identify non-canonical interactions in protein structures.

@article{citeulike:2502223, abstract = {NCI is a server for the identification of non-canonical interactions in protein structures. These interactions, which include N-H...pi, C(alpha)-H...pi, C(alpha)-H...O=C and variants of them, were first observed in small molecules and subsequently in high-resolution protein structures. Such interactions have been subjected to extensive structural analysis to elucidate the different geometric criteria required to identify them. These interactions have also recently been shown to be important for the stability of protein structures. In this work, I describe a server called NCI, which allows the user to either upload protein/peptide coordinates in Protein Data Bank (PDB) format or enter a Structural Classification of Proteins database (SCOP)/PDB identifier for which NCI identifies the different non-canonical interactions, based purely on geometric criteria. Results are presented as an HTML table, as a parseable text file and as a color-coded interaction matrix. In addition, the user can view the RasMol image highlighting the interactions in the protein structure and download the RasMol script. The NCI server is available at: http://www.mrc-lmb.cam.ac.uk/genomes/nci/.}, address = {MRC Laboratory of Molecular Biology, Hills Road, Cambridge CB2 2QH, UK. madanm@mrc-lmb.cam.ac.uk}, author = {Babu, M. M. }, citeulike-article-id = {2502223}, issn = {1362-4962}, journal = {Nucleic Acids Res}, keywords = {interface-properties}, month = {July}, number = {13}, pages = {3345--3348}, posted-at = {2008-03-10 16:36:40}, priority = {2}, title = {NCI: A server to identify non-canonical interactions in protein structures.}, url = {http://view.ncbi.nlm.nih.gov/pubmed/12824323}, volume = {31}, year = {2003} }

TY - JOUR ID - citeulike:2502223 L3 - citeulike-article-id:2502223 TI - NCI: A server to identify non-canonical interactions in protein structures. JF - Nucleic Acids Res VL - 31 IS - 13 SP - 3345 EP - 3348 AD - MRC Laboratory of Molecular Biology, Hills Road, Cambridge CB2 2QH, UK. madanm@mrc-lmb.cam.ac.uk SN - 1362-4962 N2 - NCI is a server for the identification of non-canonical interactions in protein structures. These interactions, which include N-H...pi, C(alpha)-H...pi, C(alpha)-H...O=C and variants of them, were first observed in small molecules and subsequently in high-resolution protein structures. Such interactions have been subjected to extensive structural analysis to elucidate the different geometric criteria required to identify them. These interactions have also recently been shown to be important for the stability of protein structures. In this work, I describe a server called NCI, which allows the user to either upload protein/peptide coordinates in Protein Data Bank (PDB) format or enter a Structural Classification of Proteins database (SCOP)/PDB identifier for which NCI identifies the different non-canonical interactions, based purely on geometric criteria. Results are presented as an HTML table, as a parseable text file and as a color-coded interaction matrix. In addition, the user can view the RasMol image highlighting the interactions in the protein structure and download the RasMol script. The NCI server is available at: http://www.mrc-lmb.cam.ac.uk/genomes/nci/. KW - interface-properties AU - Babu, MM PY - 2003/07/01/ UR - http://view.ncbi.nlm.nih.gov/pubmed/12824323 ER -