新規登録 | ログイン | FAQ      [?] 
Recent | Unread | Search | Authors | Tags | Export

bicko library [416 articles]

最近 bicko さんのライブラリ .
  • Comparative Analysis of Protein Structure Alignments
    BMC Structural Biology, Vol. 7 (26 July 2007), 50.
    by Gabriele Mayr, Francisco S Domingues, Peter Lackner
    posted to structure-comparison by bicko on 2008-06-12 11:07:43 as ** along with 2 people and 1 group barry chad_davis structural_bioinformatics
  • Alignment of non-covalent interactions at protein-protein interfaces.
    PLoS ONE, Vol. 3, No. 4. (2008)
    by H Zhu, I Sommer, T Lengauer, FS Domingues
    posted to ppi-clustering by bicko on 2008-06-12 11:06:33 as ** along with 2 people chad_davis marck
  • Coevolution at protein complex interfaces can be detected by the complementarity trace with important impact for predictive docking.
    Proceedings of the National Academy of Sciences of the United States of America (29 May 2008)
    by Hocine Madaoui, Raphaël Guerois
    posted to docking-scoring-function co-evolution by bicko on 2008-06-12 10:37:57 as ** along with 3 people chad_davis phoenixzxl cabbagesofdoom
  • Scoring residue conservation.
    Proteins, Vol. 48, No. 2. (1 August 2002), pp. 227-241.
    by WS Valdar
    posted to sequence-alignment by bicko on 2008-04-04 13:33:49 as ** along with 7 people and 2 groups chad_davis marti barry pansapiens sriram_s cjeans sobolevnrm structural_bioinformatics Bioinformatics
  • Characterization of protein-protein interfaces.
    The protein journal, Vol. 27, No. 1. (January 2008), pp. 59-70.
    by C Yan, F Wu, RL Jernigan, D Dobbs, V Honavar
    posted to interface-properties ppi-evolution by bicko on 2008-04-04 13:29:40 as ** along with 1 person wonaya
  • NCI: A server to identify non-canonical interactions in protein structures.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3345-3348.
    by MM Babu
    posted to interface-properties by bicko on 2008-03-10 16:36:40 as **
  • RESTRICTED MOBILITY OF CONSERVED RESIDUES IN PROTEIN-PROTEIN INTERFACES IN MOLECULAR SIMULATIONS.
    Biophys J (28 January 2008)
    by S Bora B Erdemli, O Nuri N Yogurtcu, Metin Turkay, Ruth Nussinov, Ozlem Keskin
    posted to hot-spots interface-properties by bicko on 2008-02-06 16:31:58 as ** along with 4 people higueruelo chad_davis jlh64 marti
  • Mutual information without the influence of phylogeny or entropy dramatically improves residue contact prediction
    Bioinformatics, Vol. 24, No. 3. (1 February 2008), pp. 333-340.
    by SD Dunn, LM Wahl, GB Gloor
    posted to co-evolution by bicko on 2008-02-06 16:14:54 as ** along with 3 people and 1 group marck zwang sobolevnrm baker-group
  • NOXclass: prediction of protein-protein interaction types.
    BMC Bioinformatics, Vol. 7 (2006)
    by H Zhu, FS Domingues, I Sommer, T Lengauer
    posted to obligate-transient by bicko on 2008-01-17 14:24:46 as ** along with 3 people marti chad_davis conkymacro
  • SHARP2: protein-protein interaction predictions using patch analysis
    Bioinformatics, Vol. 22, No. 14. (15 July 2006), pp. 1794-1795.
    by Yoichi Murakami, Susan Jones
    posted to interaction-site-prediction by bicko on 2008-01-17 14:00:06 as ** along with 1 person ameetsoni
  • Docking of protein molecular surfaces with evolutionary trace analysis
    Proteins: Structure, Function, and Bioinformatics, Vol. 69, No. 4. (2007), pp. 832-838.
    by Eiji Kanamori, Yoichi Murakami, Yuko Tsuchiya, Daron M Standley, Haruki Nakamura, Kengo Kinoshita
    posted to docking-scoring-function evolutionary-trace modelling-interactions by bicko on 2008-01-16 14:10:56 as **
  • Structural Modeling of Protein Interactions by Analogy: Application to PSD-95
    PLoS Computational Biology, Vol. preprint, No. 2006. (1 October 2006)
    by Dmitry Korkin, Fred P Davis, Frank Alber, Tinh Luong, Min-Yi Shen, Vladan Lucic, Mary B Kennedy, Andrej Sali
    posted to modelling-interactions by bicko on 2008-01-16 14:04:47 as ** along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • Correlated substitution analysis and the prediction of amino acid structural contacts.
    Brief Bioinform, Vol. 9, No. 1. (January 2008), pp. 46-56.
    by DS Horner, W Pirovano, G Pesole
    posted to pairwise-substitution-matrices by bicko on 2008-01-15 14:08:43 as **
  • SCOWLP classification: Structural comparison and analysis of protein binding regions
    BMC Bioinformatics, Vol. 9 (08 January 2008), 9.
    by Joan Teyra, Maciej Paszkowski-Rogacz, Gerd Anders, Teresa M Pisabarro
    posted to interface-properties ppi-clustering ppi-database by bicko on 2008-01-10 16:35:07 as ** along with 5 people paszkows carlk jteyra dimka chad_davis
  • Host pathogen protein interactions predicted by comparative modeling.
    Protein Sci, Vol. 16, No. 12. (December 2007), pp. 2585-2596.
    by FP Davis, DT Barkan, N Eswar, JH McKerrow, A Sali
    posted to modelling-interactions by bicko on 2008-01-09 19:48:59 as ** along with 1 person tmmurali
  • D<FONT SIZE='-2'>OCKGROUND</FONT> system of databases for protein recognition studies: Unbound structures for docking
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Ying Gao, Dominique Douguet, Andrey Tovchigrechko, Ilya A Vakser
    posted to ppi-database by bicko on 2008-01-09 19:40:14 as ** along with 3 people timg chad_davis RamuAnandakrishnan
  • Protein structure similarities.
    Curr Opin Struct Biol, Vol. 11, No. 3. (June 2001), pp. 348-353.
    by P Koehl
    posted to structure-comparison by bicko on 2008-01-09 18:29:45 as ** along with 2 people nigham chad_davis
  • PiQSi: protein quaternary structure investigation.
    Structure, Vol. 15, No. 11. (November 2007), pp. 1364-1367.
    by ED Levy
    posted to ppi-database quaternary-structure by bicko on 2008-01-09 18:28:00 as **
  • Vorolign--fast structural alignment using Voronoi contacts.
    Bioinformatics, Vol. 23, No. 2. (15 January 2007)
    by F Birzele, JE Gewehr, G Csaba, R Zimmer
    posted to structure-comparison voronoi by bicko on 2008-01-09 18:22:21 as ** along with 3 people chad_davis aengisch siebertm
  • Identification of transient hub proteins and the possible structural basis for their multiple interactions
    Protein Sci, Vol. 17, No. 1. (1 January 2008), pp. 72-78.
    by Miho Higurashi, Takashi Ishida, Kengo Kinoshita
    posted to promiscuous-ppis protein-flexibility protein-networks by bicko on 2008-01-09 18:07:50 as ** along with 4 people allmensch marti chad_davis balicea
  • Background frequencies for residue variability estimates: BLOSUM revisited
    BMC Bioinformatics, Vol. 8 (27 December 2007), 488.
    by I Mihalek, I Res, O Lichtarge
    posted to evolution evolutionary-trace substitution-matrices by bicko on 2008-01-09 17:57:21 as ** along with 5 people and 1 group chad_davis gokhan rabio laughcry biehl structural_bioinformatics
  • The Modular Organization of Domain Structures: Insights into Protein–Protein Binding
    PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e239.
    by Del, Pablo Carbonell
    posted to interface-properties proteins-as-graphs by bicko on 2008-01-09 17:52:00 as ** along with 9 people carlk chad_davis choonpeng grahamc cjeans zwang niallhaslam biehl marti
  • Predicting protein interaction interfaces from protein sequences: Case studies of subtilisin and phycocyanin
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Bin-Bin Xie, Xiu-Lan Chen, Xi-Ying Zhang, Hai-Lun He, Yu-Zhong Zhang, Bai-Cheng Zhou
    posted to interaction-site-prediction by bicko on 2008-01-09 17:46:53 as **
  • InterProSurf: a web server for predicting interacting sites on protein surfaces.
    Bioinformatics (12 October 2007)
    by Surendra S S Negi, Catherine H H Schein, Numan Oezguen, Trevor D D Power, Werner Braun
    posted to interaction-site-prediction by bicko on 2008-01-09 17:45:34 as ** along with 2 people Ema grahamc
  • meta-PPISP: a meta web server for protein-protein interaction site prediction.
    Bioinformatics, Vol. 23, No. 24. (15 December 2007), pp. 3386-3387.
    by S Qin, HX Zhou
    posted to interaction-site-prediction by bicko on 2008-01-09 17:44:01 as ** along with 2 people marti grahamc
  • Detecting high-order interactions of single nucleotide polymorphisms using genetic programming
    Bioinformatics, Vol. 23, No. 24. (15 December 2007), pp. 3280-3288.
    by Robin Nunkesser, Thorsten Bernholt, Holger Schwender, Katja Ickstadt, Ingo Wegener
    posted to snps by bicko on 2008-01-09 17:43:13 as ** along with 4 people jyuh brant balicea djkt
  • A simple and fuzzy method to align and compare druggable ligand-binding sites
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Claire Schalon, Jean-Sébastien Surgand, Esther Kellenberger, Didier Rognan
    posted to ligand-binding by bicko on 2008-01-09 17:22:38 as ** along with 2 people tjimenez willpitt
  • Identification of heme as the ligand for the orphan nuclear receptors REV-ERBα and REV-ERBβ
    Nature Structural & Molecular Biology, Vol. 14, No. 12. (25 November 2007), pp. 1207-1213.
    by Srilatha Raghuram, Keith R Stayrook, Pengxiang Huang, Pamela M Rogers, Amanda K Nosie, Don B Mcclure, Lorri L Burris, Sepideh Khorasanizadeh, Thomas P Burris, Fraydoon Rastinejad
    posted to nuclear-receptors by bicko on 2008-01-09 17:09:43 as **
  • PPIDD: An extraction and visualisation method of biological protein-protein interfaces.
    Biochimie (28 November 2007)
    by Vincent Benoit, Marie-Hélène H Mucchielli-Giorgi, Benoît Dumont, Patrice Durosay, Nancie Reymond, Hervé Delacroix
    posted to ppi-database by bicko on 2008-01-09 16:49:40 as **
  • Localization of protein-binding sites within families of proteins.
    Protein Sci, Vol. 14, No. 9. (September 2005), pp. 2350-2360.
    by D Korkin, FP Davis, A Sali
    posted to interaction-site-prediction ppi-evolution structure-comparison by bicko on 2008-01-09 16:16:30 as ** along with 5 people and 4 groups wilbur barry tjimenez chad_davis marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • Characterization of Protein Hubs by Inferring Interacting Motifs from Protein Interactions
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e178.
    by Ramon Aragues, Andrej Sali, Jaume Bonet, Marc A Marti-Renom, Baldo Oliva
    posted to motif-discovery protein-networks by bicko on 2008-01-09 16:11:45 as ** along with 1 person zwang
  • Structure-Templated Predictions of Novel Protein Interactions from Sequence Information
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e182.
    by Doron Betel, Kevin E Breitkreuz, Ruth Isserlin, Danielle Dewar-Darch, Mike Tyers, Christopher W Hogue
    posted to interaction-partner-prediction by bicko on 2008-01-09 16:09:03 as ** along with 3 people chad_davis dquest zwang
  • Interaction cutoff effect on ruggedness of protein-protein energy landscape
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Anatoly M Ruvinsky, Ilya A Vakser
    posted to energy-landscapes by bicko on 2008-01-09 16:03:20 as ** along with 1 person RamuAnandakrishnan
  • Docking and scoring protein complexes: CAPRI 3rd Edition
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Marc F Lensink, Raúl Méndez, Shoshana J Wodak
    posted to docking-algorithm docking-benchmark by bicko on 2008-01-09 15:57:49 as ** along with 7 people timg chad_davis ruvido cjeans carlescorbi yalexeev middledomain
  • A novel approach to local similarity of protein binding sites substantially improves computational drug design results.
    Proteins (10 July 2007)
    by Vasily Ramensky, Alexandr Sobol, Natalia Zaitseva, Anatoly Rubinov, Victor Zosimov
    posted to drug-discovery ligand-binding by bicko on 2008-01-09 15:52:13 as ** along with 2 people operon ramensky
  • Ideal amino acid exchange forms for approximating substitution matrices
    Proteins: Structure, Function, and Bioinformatics, Vol. 69, No. 2. (2007), pp. 379-393.
    by Piotr Pokarowski, Andrzej Kloczkowski, Szymon Nowakowski, Maria Pokarowska, Robert L Jernigan, Andrzej Kolinski
    posted to substitution-matrices by bicko on 2008-01-09 15:50:54 as ** along with 1 person chad_davis
  • Benchmarking template selection and model quality assessment for high-resolution comparative modeling
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by MI Sadowski, DT Jones
    posted to structure-prediction by bicko on 2008-01-09 15:48:53 as ** along with 2 people chad_davis massivemayhem
  • A large data set comparison of protein structures determined by crystallography and NMR: Statistical test for structural differences and the effect of crystal packing
    Proteins: Structure, Function, and Bioinformatics, Vol. 69, No. 3. (2007), pp. 449-465.
    by Michael Andrec, David A Snyder, Zhiyong Zhou, Jasmine Young, Gaetano T Montelione, Ronald M Levy
    posted to crystal-contacts protein-flexibility by bicko on 2008-01-09 15:47:21 as ** along with 1 person choonpeng
  • The 2.0 A crystal structure of the ERalpha ligand-binding domain complexed with lasofoxifene
    Protein Sci, Vol. 16, No. 5. (1 May 2007), pp. 897-905.
    by Felix F Vajdos, Lise R Hoth, Kieran F Geoghegan, Samuel P Simons, Peter K Lemotte, Dennis E Danley, Mark J Ammirati, Jayvardhan Pandit
    posted to nuclear-receptors by bicko on 2008-01-09 15:28:38 as **
  • A simple way to compute protein dynamics without a mechanical model.
    Proteins (13 April 2007)
    by Chien-Hua H Shih, Shao-Wei W Huang, Shih-Chung C Yen, Yan-Long L Lai, Sung-Huan H Yu, Jenn-Kang K Hwang
    posted to protein-flexibility by bicko on 2008-01-09 15:17:59 as ** along with 3 people BragilMassoud cactus jlh64
  • Predicting 3D structures of transient protein-protein complexes by homology.
    Biochim Biophys Acta, Vol. 1764, No. 9. (September 2006), pp. 1498-1511.
    by PJ Kundrotas, E Alexov
    posted to interaction-partner-prediction modelling-interactions by bicko on 2008-01-09 14:50:37 as ** along with 1 person chad_davis
  • PROTCOM: searchable database of protein complexes enhanced with domain-domain structures.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by PJ Kundrotas, E Alexov
    posted to ppi-database by bicko on 2008-01-09 14:49:21 as ** along with 1 person chad_davis
  • Structural templates predict novel protein interactions and targets from pancreas tumour gene expression data.
    Bioinformatics, Vol. 23, No. 13. (1 July 2007)
    by G Dawelbait, C Winter, Y Zhang, C Pilarsky, R Grützmann, JC Heinrich, M Schroeder
    posted to interaction-partner-prediction modelling-interactions by bicko on 2008-01-09 14:46:22 as ** along with 2 people winterschlaefer chad_davis
  • Uncovering the structural basis of protein interactions with efficient clustering of 3-D interaction interfaces.
    Comput Syst Bioinformatics Conf, Vol. 6 (2007), pp. 287-297.
    by Z Aung, SH Tan, SK Ng, KL Tan
    posted to ppi-clustering by bicko on 2008-01-09 12:52:50 as ** along with 2 people chad_davis ladab
  • HotSprint: database of computational hot spots in protein interfaces.
    Nucleic Acids Res (24 October 2007)
    by Emre Guney, Nurcan Tuncbag, Ozlem Keskin, Attila Gursoy
    posted to hot-spots ppi-database by bicko on 2008-01-09 12:35:03 as ** along with 1 person chad_davis
  • IPPRED: server for proteins interactions inference.
    Bioinformatics, Vol. 19, No. 7. (1 May 2003), pp. 903-904.
    by N Goffard, V Garcia, F Iragne, A Groppi, A de Daruvar
    posted to interaction-partner-prediction by bicko on 2008-01-09 12:32:20 as ** along with 1 person chad_davis
  • Finding coevolving amino acid residues using row and column weighting of mutual information and multi-dimensional amino acid representation
    Algorithms for Molecular Biology, Vol. 2 (03 October 2007), 12.
    by Rodrigo Gouveia-Oliveira, Anders G Pedersen
    posted to co-evolution evolution by bicko on 2007-10-22 23:29:31 as ** along with 3 people ca3295 nklee IrinaMoreira
  • Electrostatic rate enhancement and transient complex of protein-protein association.
    Proteins (11 October 2007)
    by Ramzi Alsallaq, Huan-Xiang X Zhou
    posted to energy-landscapes interface-properties by bicko on 2007-10-22 23:23:54 as ** along with 1 person and 1 group sobolevnrm baker-group
  • Protein-protein binding is often associated with changes in protonation state
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Aaron C Mason, Jan H Jensen
    posted to interface-properties ion-pairs by bicko on 2007-10-22 23:20:14 as ** along with 4 people and 3 groups barry chad_davis sobolevnrm RamuAnandakrishnan McCammon structural_bioinformatics baker-group
  • Large-scale characteristics of the energy landscape in protein-protein interactions.
    Proteins (11 October 2007)
    by Nicholas O'toole, Ilya A A Vakser
    posted to energy-landscapes by bicko on 2007-10-22 23:18:16 as ** along with 2 people hmk paulschlesinger
    • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/user/bicko

    Result page: 1 2 3 4 5 6 7 8 9 Next RIS BibTeX RSS
    CiteULike organises scholarly (or academic) papers or literature and provides bibliographic (which means it makes bibliographies) for universities and higher education establishments. It helps undergraduates and postgraduates. People studying for PhDs or in postdoctoral (postdoc) positions. The service is similar in scope to EndNote or RefWorks or any other reference manager like BibTeX, but it is a social bookmarking service for scientists and humanities researchers.