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bertelsen library [192 articles]

最近 bertelsen さんのライブラリ .
  • SimulFold: Simultaneously Inferring RNA Structures Including Pseudoknots, Alignments, and Trees Using a Bayesian MCMC Framework
    PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e149.
    by Irmtraud M Meyer, István Miklós
    posted to structure rna bayesian by bertelsen on 2008-07-03 16:20:36 as ** along with 3 people zwang raylim cabbagezs
  • notes hopach: Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH)
    by Katherine, Mark
    posted to clustering by bertelsen on 2008-07-03 01:33:02 as **
  • Gene Ontology analysis in multiple gene clusters under multiple hypothesis testing framework.
    Artif Intell Med, Vol. 41, No. 2. (October 2007), pp. 105-115.
    by S Zhong, D Xie
    posted to test ontology multiple hypothesis go gene clustering by bertelsen on 2008-07-03 01:24:32 as *** along with 1 person jyuh
  • Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes
    BMC Bioinformatics, Vol. 7 (31 August 2006), 397.
    by Susmita Datta, Somnath Datta
    posted to methods evaluation clustering algorithms by bertelsen on 2008-07-03 01:22:53 as *** along with 4 people and 1 group bobychan jfr aviad_work ealloza BioinfoCIPF
  • Quantitative Trait Associated Microarray Gene Expression Data Analysis
    Mol Biol Evol, Vol. 23, No. 8. (1 August 2006), pp. 1558-1573.
    by Yi Qu, Shizhong Xu
    posted to quantitative microarray gene expression data classification analysis by bertelsen on 2008-07-03 01:21:18 as ** along with 1 person natstreet
  • Bayesian biclustering of gene expression data
    BMC Genomics, Vol. 9, No. Suppl 1. (2008)
    by Jiajun Gu, Jun Liu
    posted to gene expression clustering bayesian by bertelsen on 2008-07-03 01:11:36 as **** along with 4 people dragonrez jfr tvdbulck yangc
  • Gene regulatory networks in lactation: identification of global principles using bioinformatics.
    BMC systems biology, Vol. 1 (2007)
    by DG Lemay, MC Neville, MC Rudolph, KS Pollard, JB German
    posted to regulation networks bioinformatics by bertelsen on 2008-07-03 01:09:04 as **
  • A novel approach for clustering proteomics data using Bayesian fast Fourier transform
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2210-2224.
    by Halima Bensmail, Jennifer Golek, Michelle M Moody, John O Semmes, Abdelali Haoudi
    posted to transformation proteomics clustering bayesian by bertelsen on 2008-07-03 00:41:50 as **
  • notes R: A Language and Environment for Statistical Computing
    (2007)
    by R Development Core Team
    posted to r manual by bertelsen on 2008-07-01 22:41:08 as ** along with 1 person akastrin
  • ROCR: visualizing classifier performance in R.
    Bioinformatics (11 August 2005)
    by Tobias Sing, Oliver Sander, Niko Beerenwinkel, Thomas Lengauer
    posted to visualization r performance classification by bertelsen on 2008-07-01 22:26:18 as ** along with 9 people and 4 groups BragilMassoud ana barry Ayest lyongu marcius schlauchi gokhan za structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • Bayesian Computation with R
    (31 July 2007)
    by Jim Albert
    posted to r programming computation bayesian by bertelsen on 2008-07-01 22:19:50 as ** along with 1 person mjm
  • GGtools: analysis of genetics of gene expression in bioconductor
    Bioinformatics, Vol. 23, No. 4. (15 February 2007), pp. 522-523.
    by Carey, J Vincent, Morgan, Martin, Falcon, Seth, Lazarus, Ross, Gentleman, Robert
    posted to genetcis gene expression bioconductor analysis by bertelsen on 2008-07-01 18:33:04 as **
  • Biopython: Python tools for computational biology
    SIGBIO Newsl., Vol. 20, No. 2. (August 2000), pp. 15-19.
    by Brad Chapman, Jeffrey Chang
    posted to tool python computational biopython biology by bertelsen on 2008-07-01 18:23:24 as ** along with 1 person edvin
  • The Bio* toolkits--a brief overview.
    Briefings in Bioinformatics, Vol. 3, No. 3. (September 2002), pp. 296-302.
    by H Mangalam
    posted to tool overview bioinformatics by bertelsen on 2008-07-01 18:22:10 as ** along with 4 people chad_davis moborg dullhunk noby
  • Bioconductor: open software development for computational biology and bioinformatics.
    Genome Biol, Vol. 5, No. 10. (2004)
    by RC Gentleman, VJ Carey, DM Bates, B Bolstad, M Dettling, S Dudoit, B Ellis, L Gautier, Y Ge, J Gentry, K Hornik, T Hothorn, W Huber, S Iacus, R Irizarry, F Leisch, C Li, M Maechler, AJ Rossini, G Sawitzki, C Smith, G Smyth, L Tierney, JY Yang, J Zhang
    posted to r bioinformatics bioconductor by bertelsen on 2008-07-01 18:08:29 as **** along with 13 people and 1 group bakakaj zhouyu gupton Dax42 pcahan1 balajis dullhunk giovanni incovoma talponer medha1 wirawan joule GeschwindLab
  • Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package annotationTools
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Alexandre Kuhn, Ruth L Carter, Mauro Delorenzi
    posted to r microarray cross-platform bioconductor annotation analysis by bertelsen on 2008-07-01 18:05:44 as *** along with 9 people ablejec zhouyu jyuh jfr balicea dullhunk ghattem RamuAnandakrishnan heliopais
  • GEOquery: a bridge between the Gene Expression Omnibus (GEO) and BioConductor.
    Bioinformatics (12 May 2007)
    by Sean Davis, Paul S S Meltzer
    posted to microarray gene expression bioconductor analysis by bertelsen on 2008-07-01 18:02:32 as **** along with 6 people ablejec zhouyu giovenko jyuh jfr ugengma
  • Regulation of alternative polyadenylation by genomic imprinting.
    Genes & development, Vol. 22, No. 9. (1 May 2008), pp. 1141-1146.
    by Andrew J J Wood, Reiner Schulz, Kathryn Woodfine, Katarzyna Koltowska, Colin V V Beechey, Jo Peters, Deborah Bourc'his, Rebecca J J Oakey
    posted to regulation polyadenylation imprinting genomics alternative by bertelsen on 2008-06-25 19:24:52 as *** along with 3 people and 1 group sebastien_vigneau stefanjanusz rschulz Imprinting
  • Biological pathway kinetic rate constants are scale-invariant
    Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 741-743.
    by Scott Grandison, Richard J Morris
    posted to pathway networks kinetic biology by bertelsen on 2008-06-25 17:09:59 as ** along with 1 person Ema
  • A machine-learning approach to combined evidence validation of genome assemblies
    Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 744-750.
    by Jeong-Hyeon Choi, Sun Kim, Haixu Tang, Justen Andrews, Don G Gilbert, John K Colbourne
    posted to machine-learning genome by bertelsen on 2008-06-25 17:08:07 as ** along with 4 people ttuechler tharris Neeperando GustavoLacerda
  • AceView: a comprehensive cDNA-supported gene and transcripts annotation.
    Genome Biol, Vol. 7 Suppl 1 (2006)
    by D Thierry-Mieg, J Thierry-Mieg
    posted to transcripts database cdna annotation by bertelsen on 2008-06-25 17:04:42 as ** along with 3 people and 1 group jyuh wenhan jandot Bioinformatics
  • Microarray data normalization and transformation.
    Nat Genet, Vol. 32 Suppl (December 2002), pp. 496-501.
    by J Quackenbush
    posted to transformation review normalization microarray by bertelsen on 2008-06-25 16:11:32 as *** along with 6 people frohike textoris alokm chad_davis schuylrp heliopais
  • The Vmatch large scale sequence analysis software
    (11 October 2007)
    by Stefan Kurtz
    posted to software sequence analysis by bertelsen on 2008-06-25 00:00:52 as **
  • GENERIC FEATURE FORMAT VERSION 3
    The Sequence Ontology Project (23 May 2007)
    by Lincoln Stein
    posted to format by bertelsen on 2008-06-24 21:21:14 as read
  • Alternative Splicing and Transcript Diversity 1.1
    EBI Databases - ASTD Home (12 February 2008)
    by ASTD Team, EMBL Outstation
    posted to transcripts polyadenylation database alternative by bertelsen on 2008-06-24 21:14:26 as read
  • Differential analysis for high density tiling microarray data
    BMC Bioinformatics, Vol. 8 (24 September 2007), 359.
    by Srinka Ghosh, Heather A Hirsch, Edward A Sekinger, Philipp Kapranov, Kevin Struhl, Thomas R Gingeras
    posted to tiling statistics microarray encode differential analysis by bertelsen on 2008-06-13 21:04:57 as *** along with 1 person jfr
  • Effect of 5'UTR introns on gene expression in Arabidopsis thaliana.
    BMC Genomics, Vol. 7 (2006)
    by BY Chung, C Simons, AE Firth, CM Brown, RP Hellens
    posted to plant introns expression 5-utr by bertelsen on 2008-06-13 01:16:29 as ** along with 1 person byy
  • Mechanisms of translational control by the 3' UTR in development and differentiation.
    Semin Cell Dev Biol, Vol. 16, No. 1. (February 2005), pp. 49-58.
    by CH de Moor, H Meijer, S Lissenden
    posted to translation review mechanism differentiation development control 3-utr by bertelsen on 2008-06-12 23:43:47 as **** along with 1 person tardigrade
  • Identification of candidate regulatory sequences in mammalian 3' UTRs by statistical analysis of oligonucleotide distributions
    BMC Bioinformatics, Vol. 8 (24 May 2007), 174.
    by Davide Cora', Ferdinando Di Cunto, Michele Caselle, Paolo Provero
    posted to statistical sequence regulation oligonucleotide mammalian distribution analysis 3-utr by bertelsen on 2008-06-12 23:40:34 as ***** along with 4 people and 2 groups nuin andersbj mtagaya GustavoLacerda Bioinformatics microRNA
  • Hidden layers of human small RNAs
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Hideya Kawaji, Mari Nakamura, Yukari Takahashi, Albin Sandelin, Shintaro Katayama, Shiro Fukuda, Carsten Daub, Chikatoshi Kai, Jun Kawai, Jun Yasuda, Piero Carninci, Yoshihide Hayashizaki
    posted to rna human by bertelsen on 2008-06-12 21:54:01 as **** along with 3 people maralena mtagaya heliopais
  • Comment on mathematical models which describe transcription and calculate the relationship between mRNA and protein expression ratio.
    Biotechnology and bioengineering, Vol. 96, No. 4. (1 March 2007), pp. 815-819.
    by A Kremling
    posted to transcriptionn protein mrna model kinetic expression by bertelsen on 2008-06-10 22:32:22 as **
  • Kinetic modeling and simulation of in vitro transcription by phage T7 RNA polymerase.
    Biotechnology and bioengineering, Vol. 72, No. 5. (5 March 2001), pp. 548-561.
    by S Arnold, M Siemann, K Scharnweber, M Werner, S Baumann, M Reuss
    posted to transcription t7 simulation rna polymerase modeling kinetic invitro by bertelsen on 2008-06-10 22:30:09 as ****
  • Simpleaffy: a BioConductor package for Affymetrix Quality Control and data analysis
    Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3683-3685.
    by Claire L Wilson, Crispin J Miller
    posted to quality microarray degradation data control bioconductor analysis affymetrix affy by bertelsen on 2008-06-10 22:15:48 as ****
  • Three methods for optimization of cross-laboratory and cross-platform microarray expression data.
    Nucleic Acids Res, Vol. 35, No. 10. (2007)
    by P Stafford, M Brun
    posted to optimization microarray cross-platform cross-laboratory by bertelsen on 2008-06-10 21:40:20 as ** along with 2 people jyuh jfr
  • Pre-processing Agilent microarray data
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Marianna Zahurak, Giovanni Parmigiani, Wayne Yu, Robert Scharpf, David Berman, Edward Schaeffer, Shabana Shabbeer, Leslie Cope
    posted to pre-processing microarray expression cdna array agilent by bertelsen on 2008-06-10 21:27:20 as ** along with 3 people jfr jhatrimatri shigepong
  • Topological Adjustments to Genechip Expression Values
    Methods of Microarray Data Analysis III (2004), pp. 93-101.
    by Andrey Ptitsyn
    posted to quality pattern microarray genechip expression affymetrix adjustment by bertelsen on 2008-06-10 21:23:40 as **
  • Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations
    BMC Bioinformatics, Vol. 7 (02 June 2006), 276.
    by Michal J Okoniewski, Crispin J Miller
    posted to probe microarray hybridization annotation by bertelsen on 2008-06-10 21:13:39 as **** along with 4 people jfr dquest medmhw heliopais
  • AffyProbeMiner: a web resource for computing or retrieving accurately redefined Affymetrix probe sets.
    Bioinformatics (27 July 2007)
    by Hongfang Liu, Barry R R Zeeberg, Qu Gang, A Gunes G Koru, Alessandro Ferrucci, Ari Kahn, Michael C C Ryan, Antej Nuhanovic, Peter J J Munson, William C C Reinhold, David W W Kane, John N N Weinstein
    posted to web probe annotation affymetrix affy by bertelsen on 2008-06-10 21:10:04 as ** along with 6 people jyuh jfr ghattem ryanraaum heliopais Montrachet
  • An annotation infrastructure for the analysis and interpretation of Affymetrix exon array data
    Genome Biology, Vol. 8 (11 May 2007), R79.
    by Michal J Okoniewski, Tim Yates, Sian Dibben, Crispin J Miller
    posted to microarray exons annotation analysis affymetrix by bertelsen on 2008-06-10 21:08:40 as ** along with 2 people jfr heliopais
  • Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data
    BMC Bioinformatics, Vol. 8 (11 June 2007), 194.
    by Hui Yu, Feng Wang, Kang Tu, Lu Xie, Yuan-Yuan Li, Yi-Xue Li
    posted to transcript probe microarray interpretation annotation by bertelsen on 2008-06-10 21:07:26 as *** along with 3 people jyuh jfr heliopais
  • A sequence-based identification of the genes detected by probesets on the Affymetrix U133 plus 2.0 array
    Nucleic Acids Research, Vol. 33, No. 3. (2005), pp. e31-e31.
    by Jeremy Harbig, Robert Sprinkle, Steven A Enkemann
    posted to sequence probe microarray mapping annotation by bertelsen on 2008-06-10 21:04:28 as **** along with 3 people jfr incovoma heliopais
  • Improved precision and accuracy for microarrays using updated probe set definitions
    BMC Bioinformatics, Vol. 8 (08 February 2007), 48.
    by Rickard Sandberg, Ola Larsson
    posted to probe precision microarray accuracy by bertelsen on 2008-06-10 21:01:56 as *** along with 5 people jfr gpalidwor shigepong ghattem heliopais
  • Unsupervised pattern recognition: An introduction to the whys and wherefores of clustering microarray data.
    Brief Bioinform, Vol. 6, No. 4. (December 2005), pp. 331-343.
    by PC Boutros, AB Okey
    posted to review proteomics microarray co-regulation co-expression clustering biology annotation by bertelsen on 2008-06-10 20:41:00 as **** along with 7 people jfr metamerist tabu samal srfairclough akastrin xili03
  • Propagating uncertainty in microarray data analysis
    Brief Bioinform, Vol. 7, No. 1. (1 March 2006), pp. 37-47.
    by Magnus Rattray, Xuejun Liu, Guido Sanguinetti, Marta Milo, Neil D Lawrence
    posted to microarray bayesian analysis by bertelsen on 2008-06-07 16:31:04 as *****
  • A tractable probabilistic model for Affymetrix probe-level analysis across multiple chips
    Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3637-3644.
    by Xuejun Liu, Marta Milo, Neil D Lawrence, Magnus Rattray
    posted to probe-level model bayesian analysis affymetrix by bertelsen on 2008-06-06 21:09:27 as **** along with 1 person RMGraze
  • BGX: a fully Bayesian integrated approach to the analysis of Affymetrix GeneChip data
    Biostatistics, Vol. 6, No. 3. (July 2005), pp. 349-373.
    by Anne-Mette K Hein
    posted to genechip bayesian analysis affymetrix by bertelsen on 2008-06-06 20:37:31 as *****
  • Serial analysis of gene expression.
    Science, Vol. 270, No. 5235. (20 October 1995), pp. 484-487.
    by VE Velculescu, L Zhang, B Vogelstein, KW Kinzler
    posted to sage by bertelsen on 2008-06-05 23:02:14 as *** along with 5 people and 1 group xiaobeizhao gurkanbebek jeremymiller epigenetics elzodw GeschwindLab
  • The T7-primer is a source of experimental bias and introduces variability between microarray platforms.
    PLoS ONE, Vol. 3, No. 4. (2008)
    by RM Kerkhoven, D Sie, M Nieuwland, M Heimerikx, J De Ronde, W Brugman, A Velds
    posted to t7-primer microarray experiment bias amplification by bertelsen on 2008-06-05 22:24:15 as ****
  • MicroRNA regulation of messenger-like noncoding RNAs: a network of mutual microRNA control
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Yi Zhao, Shunmin He, Changning Liu, Songwei Ru, Haitao Zhao, Zhen Yang, Pengcheng Yang, Xiongyin Yuan, Shiwei Sun, Dongbo Bu, Jiefu Huang, Geir Skogerbø, Runsheng Chen
    posted to regulation noncoding network mirna by bertelsen on 2008-06-05 21:32:15 as **** along with 4 people and 2 groups stajich biozy imtechnology maralena Berkeley Mycology microRNA
  • Large-scale transcriptional activity in chromosomes 21 and 22.
    Science, Vol. 296, No. 5569. (3 May 2002), pp. 916-919.
    by P Kapranov, SE Cawley, J Drenkow, S Bekiranov, RL Strausberg, SP Fodor, TR Gingeras
    posted to microarray encode affymetrix by bertelsen on 2008-06-04 23:08:30 as ** along with 1 person evaf
    • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/user/bertelsen

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