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benwei blast [15 articles]

最近 benwei さんのライブラリに追加された論文の中から タグ blast. You can also see everyone's blast.
  • BLAST Benchmarks (PowerPoint presentation)
    NCBI FTP (ftp://ftp.ncbi.nih.gov/blast/demo/benchmark) (2005)
    by George Coulouris
    posted to blast bioinformatics benchmarks by benwei on 2008-06-13 10:14:31 as **
  • Parallel genomic sequence-search on a massively parallel system
    (2007), pp. 59-68.
    by Oystein Thorsen, Brian Smith, Carlos P Sosa, Karl Jiang, Heshan Lin, Amanda Peters, Wu-Chun Feng
    posted to parallelcomputing blast bioinformatics by benwei on 2008-06-13 09:47:20 as **
  • Mitrion-C Open Bio Project
    http://mitc-openbio.sourceforge.net/
    by Mitrionics
    posted to mitrionics fpga blast bioinformatics by benwei on 2008-06-13 09:40:43 as read
  • Single Pass, BLAST-Like, Approximate String Matching on FPGAs
    Field-Programmable Custom Computing Machines, 2006. FCCM '06. 14th Annual IEEE Symposium on (2006), pp. 217-226.
    by Martin C Herbordt, Josh Model, Yongfeng Gu, Bharat Sukhwani, Tom Vancourt
    posted to fpga blast bioinformatics by benwei on 2008-06-13 09:27:34 as read
  • A General Reconfigurable Architecture for the BLAST Algorithm
    The Journal of VLSI Signal Processing, Vol. 48, No. 3. (2007), pp. 189-208.
    by Euripides Sotiriades, Apostolos Dollas
    posted to fpga blast bioinformatics by benwei on 2008-06-13 09:22:09 as read
  • Rapid Phototyping of a System-on-a-Chip for the BLAST Algorithm Implementation
    Rapid System Prototyping, 2006. Seventeenth IEEE International Workshop on (2006), pp. 223-229.
    by E Sotiriades, C Kozanitis, G Chrysos, A Dollas
    posted to blast bioinformatics by benwei on 2008-06-08 00:59:39 as **
  • A greedy algorithm for aligning DNA sequences.
    J Comput Biol, Vol. 7, No. 1-2. (r 2000), pp. 203-214.
    by Z Zhang, S Schwartz, L Wagner, W Miller
    posted to blast bioinformatics by benwei on 2008-06-08 00:08:23 as ** along with 4 people bozdagd AaronDarling azazello sujaikumar
  • The Design, Implementation, and Evaluation of mpiBLAST
    by Aaron E Darling, Lucas Carey, Wu C Feng
    posted to parallelcomputing mpiblast cse blast bioinformatics by benwei on 2008-06-07 08:22:38 as **
  • Cuckoo Hashing
    Lecture Notes in Computer Science, Vol. 2161 (2001), pp. 121-??.
    by Rasmus Pagh, Flemming F Rodler
    posted to hashing cuckoohashing blast by benwei on 2008-06-05 08:17:32 as *** along with 1 person xsolomon
  • Mercury BLASTN: Faster DNA Sequence Comparison Using a Streaming Hardware Architecture
    (July 2007)
    by Jeremy D Buhler, Joseph M Lancaster, Arpith C Jacob, Roger D Chamberlain
    posted to parallelcomputing mercury fpga cse blast bioinformatics by benwei on 2008-05-30 08:53:59 as read
  • Basic local alignment search tool.
    J Mol Biol, Vol. 215, No. 3. (5 October 1990), pp. 403-410.
    by SF Altschul, W Gish, W Miller, EW Myers, DJ Lipman
    posted to cse blast bioinformatics by benwei on 2008-05-25 05:05:38 as ** along with 41 people and 5 groups granujilla ashaytan camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel Thaverkamp shung marti hervelequere dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology
  • Biosequence similarity search on the mercury system
    (2004)
    by P Krishnamurthy, J Buhler, R Chamberlain, M Franklin, K Gyang, J Lancaster
    posted to bioinformatics blast fpga mercury by benwei on 2008-02-14 08:37:22 as read
  • Improved BLAST searches using longer words for protein seeding
    Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2949-2951.
    by Sergey A Shiryev, Jason S Papadopoulos, Alejandro A Schaffer, Richa Agarwala
    posted to bioinformatics blast by benwei on 2008-01-17 08:55:14 as *** along with 2 people ardalby jyuh
  • FPGA-accelerated seed generation in Mercury BLASTP
    Field-Programmable Custom Computing Machines, 2007. FCCM 2007. 15th Annual IEEE Symposium on (2007), pp. 95-106.
    by Arpith Jacob, Joseph Lancaster, Jeremy Buhler, Roger D Chamberlain
    posted to bioinformatics blast fpga by benwei on 2008-01-17 08:48:12 as **** along with 1 person reactgary
  • RC-BLAST: towards a portable, cost-effective open source hardware implementation
    Parallel and Distributed Processing Symposium, 2005. Proceedings. 19th IEEE International (2005), 8 pp..
    by K Muriki, KD Underwood, R Sass
    posted to bioinformatics blast fpga parallelcomputing by benwei on 2008-01-17 08:47:13 as *** along with 2 people vivekv80 smithmc
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