Spike sorting based upon machine learning algorithms (SOMA)

@article{citeulike:2801439, abstract = {We have developed a spike sorting method, using a combination of various machine learning algorithms, to analyse electrophysiological data and automatically determine the number of sampled neurons from an individual electrode, and discriminate their activities. We discuss extensions to a standard unsupervised learning algorithm (Kohonen), as using a simple application of this technique would only identify a known number of clusters. Our extra techniques automatically identify the number of clusters within the dataset, and their sizes, thereby reducing the chance of misclassification. We also discuss a new pre-processing technique, which transforms the data into a higher dimensional feature space revealing separable clusters. Using principal component analysis (PCA) alone may not achieve this. Our new approach appends the features acquired using PCA with features describing the geometric shapes that constitute a spike waveform. To validate our new spike sorting approach, we have applied it to multi-electrode array datasets acquired from the rat olfactory bulb, and from the sheep infero-temporal cortex, and using simulated data. The SOMA sofware is available at http://www.sussex.ac.uk/Users/pmh20/spikes.}, author = {Horton, P. M. and Nicol, A. U. and Kendrick, K. M. and Feng, J. F. }, citeulike-article-id = {2801439}, doi = {10.1016/j.jneumeth.2006.08.013}, journal = {Journal of Neuroscience Methods}, keywords = {som, spikesorting}, month = {February}, number = {1}, pages = {52--68}, posted-at = {2008-05-15 13:14:44}, priority = {2}, title = {Spike sorting based upon machine learning algorithms (SOMA)}, url = {http://dx.doi.org/10.1016/j.jneumeth.2006.08.013}, volume = {160}, year = {2007} }

TY - JOUR ID - citeulike:2801439 L3 - citeulike-article-id:2801439 TI - Spike sorting based upon machine learning algorithms (SOMA) JF - Journal of Neuroscience Methods VL - 160 IS - 1 SP - 52 EP - 68 N2 - We have developed a spike sorting method, using a combination of various machine learning algorithms, to analyse electrophysiological data and automatically determine the number of sampled neurons from an individual electrode, and discriminate their activities. We discuss extensions to a standard unsupervised learning algorithm (Kohonen), as using a simple application of this technique would only identify a known number of clusters. Our extra techniques automatically identify the number of clusters within the dataset, and their sizes, thereby reducing the chance of misclassification. We also discuss a new pre-processing technique, which transforms the data into a higher dimensional feature space revealing separable clusters. Using principal component analysis (PCA) alone may not achieve this. Our new approach appends the features acquired using PCA with features describing the geometric shapes that constitute a spike waveform. To validate our new spike sorting approach, we have applied it to multi-electrode array datasets acquired from the rat olfactory bulb, and from the sheep infero-temporal cortex, and using simulated data. The SOMA sofware is available at http://www.sussex.ac.uk/Users/pmh20/spikes. KW - som KW - spikesorting AU - Horton, PM AU - Nicol, AU AU - Kendrick, KM AU - Feng, JF PY - 2007/02/15/ UR - http://dx.doi.org/10.1016/j.jneumeth.2006.08.013 ER -