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barry domain_motions [15 articles]

最近 barry さんのライブラリに追加された論文の中から タグ domain_motions. You can also see everyone's domain_motions.
  • notes Combining Elastic Network Analysis and Molecular Dynamics Simulations by Hamiltonian Replica Exchange
    J. Chem. Theory Comput., Vol. 4, No. 3. (11 March 2008), pp. 477-487.
    by M Zacharias
    posted to coarse-grained domain_motions md_simulation nma by barry on 2008-03-20 01:18:55 as ** along with 1 person and 1 group sobolevnrm baker-group
  • Analysis of Domain Movements in Glutamine-Binding Protein with Simple Models
    Biophys. J., Vol. 92, No. 4. (15 February 2007), pp. 1326-1335.
    by Ji G Su, Xiong Jiao, Ting G Sun, Chun H Li, Wei Z Chen, Cun X Wang
    posted to domain_motions nma by barry on 2007-09-13 18:57:46 as * along with 2 groups structural_bioinformatics Bioinformatics
  • Multivariate Analysis of Conserved Sequence-Structure Relationships in Kinesins: Coupling of the Active Site and a Tubulin-binding Sub-domain
    Journal of Molecular Biology, Vol. 368, No. 5. (18 May 2007), pp. 1231-1248.
    by Barry J Grant, Andrew J Mccammon, Leo S Caves, Robert A Cross
    posted to bioinf_methods clustering core_structure correlated_motions domain_motions kinesin mine molecular_motors ntpases p-loop pca protein_dynamics protein_sequence protein_structure r sca structural_bioinformatics swi-swii torsion_angles by barry on 2007-04-27 17:41:06 as read along with 3 people and 2 groups choonpeng cactus insectopalo structural_bioinformatics Bioinformatics
  • Protein flexibility acclimatizes photosynthetic energy conversion to the ambient temperature
    Nature, Vol. 442, No. 7104. (23 July 2006), pp. 827-830.
    by Oksana Shlyk-Kerner, Ilan Samish, David Kaftan, Neta Holland, Maruthi PS Sai, Hadar Kless, Avigdor Scherz
    posted to domain_motions protein_design protein_dynamics protein_structure by barry on 2006-08-16 21:45:51 as ***** along with 2 groups structural_bioinformatics Bioinformatics
  • Normal modes for predicting protein motions: a comprehensive database assessment and associated Web tool.
    Protein Sci, Vol. 14, No. 3. (March 2005), pp. 633-643.
    by V Alexandrov, U Lehnert, N Echols, D Milburn, D Engelman, M Gerstein
    posted to domain_motions nma protein_dynamics by barry on 2006-08-15 19:48:27 as read along with 2 people and 2 groups ana aqeel structural_bioinformatics Bioinformatics
  • notes Dynamic domains: A simple method of analysing structural movements in proteins
    Molecular Engineering, Vol. 5, No. 1-3. (1996)
    by Krystyna Zakrzewska
    posted to domain_motions protein_structure by barry on 2006-08-15 19:40:31 as ** along with 2 groups structural_bioinformatics Bioinformatics
  • Systematic analysis of domain motions in proteins from conformational change: New results on citrate synthase and T4 lysozyme
    Proteins: Structure, Function, and Genetics, Vol. 30, No. 2. (1998), pp. 144-154.
    by Steven Hayward, Herman JC Berendsen
    posted to domain_motions protein_dynamics protein_sequence by barry on 2006-08-15 19:31:25 as ** along with 1 person and 2 groups nigham structural_bioinformatics Bioinformatics
  • Identification of dynamical correlations within the myosin motor domain by the normal mode analysis of an elastic network model.
    J Mol Biol, Vol. 346, No. 3. (25 February 2005), pp. 745-759.
    by W Zheng, B Brooks
    posted to domain_motions kinesin molecular_motors myosin protein_dynamics by barry on 2006-08-15 19:19:43 as ** along with 2 people and 2 groups lna aqeel structural_bioinformatics Bioinformatics
  • Domain identification by iterative analysis of error-scaled difference distance matrices
    Acta Crystallographica Section D: Biological Crystallography, Vol. 60, No. 1. (01 December 2004), pp. 2269-2275.
    by Schneider,
    posted to bioinf_methods core_structure distance_matrices domain_motions by barry on 2006-02-23 02:01:05 as ** along with 2 groups structural_bioinformatics Bioinformatics
  • Topological Determinants of Protein Domain Swapping
    Structure, Vol. 14, No. 1. (January 2006), pp. 5-14.
    by Feng Ding, Kirk C Prutzman, Sharon L Campbell, Nikolay V Dokholyan
    posted to contacts core_structure domain_motions domain_swapping networks protein_dynamics protein_folding protein_structure by barry on 2006-01-16 20:12:22 as **** along with 2 groups structural_bioinformatics Bioinformatics
  • Systematic analysis of domain motions in proteins from conformational change: new results on citrate synthase and T4 lysozyme.
    Proteins, Vol. 30, No. 2. (1 February 1998), pp. 144-154.
    by S Hayward, HJ Berendsen
    posted to bioinf_methods domain_motions protein_design protein_dynamics protein_structure by barry on 2005-10-09 08:22:02 as read along with 2 groups structural_bioinformatics Bioinformatics
  • Hierarchical clustering of the correlation patterns: New method of domain identification in proteins.
    Biophys Chem (24 August 2005)
    by S O O Yesylevskyy, V N N Kharkyanen, A P P Demchenko
    posted to domain_motions nma pca protein_dynamics by barry on 2005-10-08 00:55:14 as ** along with 2 people and 3 groups yongzhao choonpeng structural_bioinformatics Bioinformatics TSRI_MGL
  • Normal mode analysis of macromolecular motions in a database framework: developing mode concentration as a useful classifying statistic.
    Proteins, Vol. 48, No. 4. (1 September 2002), pp. 682-695.
    by WG Krebs, V Alexandrov, CA Wilson, N Echols, H Yu, M Gerstein
    posted to domain_motions nma protein_dynamics by barry on 2005-10-08 00:54:31 as ** along with 5 people and 3 groups apaydin ana aqeel yongzhao martainn structural_bioinformatics Bioinformatics TSRI_MGL
  • Analysis of domain motions in large proteins
    Proteins: Structure, Function, and Genetics, Vol. 34, No. 3., pp. 369-382.
    by Konrad Hinsen, Aline Thomas, Martin J Field
    posted to domain_motions nma by barry on 2005-10-08 00:53:28 as ** along with 2 people and 3 groups shadowman yongzhao structural_bioinformatics Bioinformatics TSRI_MGL
  • Analysis of domain motions by approximate normal mode calculations
    Proteins: Structure, Function, and Genetics, Vol. 33, No. 3. (9 March 1999), pp. 417-429.
    by Konrad Hinsen
    posted to domain_motions nma by barry on 2005-10-08 00:53:06 as ** along with 4 people and 3 groups BragilMassoud shadowman aqeel yongzhao structural_bioinformatics Bioinformatics TSRI_MGL
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