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balajis no-tag [196 articles]

最近 balajis さんのライブラリに追加された論文の中から タグ no-tag. You can also see everyone's no-tag.
  • Base-calling of automated sequencer traces using phred. II. Error probabilities.
    Genome Res, Vol. 8, No. 3. (March 1998), pp. 186-194.
    by B Ewing, P Green
    posted to no-tag by balajis on 2007-05-21 06:32:17 as ** along with 3 people and 2 groups indigoviolet giovanni bozdagd Bioinformatics EisenLab
  • Base-calling of automated sequencer traces using phred. I. Accuracy assessment.
    Genome Res, Vol. 8, No. 3. (March 1998), pp. 175-185.
    by B Ewing, L Hillier, MC Wendl, P Green
    posted to no-tag by balajis on 2007-05-21 06:32:08 as ** along with 3 people and 1 group giovanni werwiesel bozdagd Bioinformatics
  • Least Angle Regression
    (30 Jun 2004)
    by Bradley Efron, Trevor Hastie, Iain Johnstone, Robert Tibshirani
    posted to no-tag by balajis on 2007-05-21 06:01:52 as **
  • cisRED: a database system for genome-scale computational discovery of regulatory elements.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by G Robertson, M Bilenky, K Lin, A He, W Yuen, M Dagpinar, R Varhol, K Teague, OL Griffith, X Zhang, Y Pan, M Hassel, MC Sleumer, W Pan, ED Pleasance, M Chuang, H Hao, YY Li, N Robertson, C Fjell, B Li, SB Montgomery, T Astakhova, J Zhou, J Sander, AS Siddiqui, SJ Jones
    posted to no-tag by balajis on 2007-05-21 05:40:30 as **
  • NONCODE: an integrated knowledge database of non-coding RNAs.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by C Liu, B Bai, G Skogerbø, L Cai, W Deng, Y Zhang, D Bu, Y Zhao, R Chen
    posted to no-tag by balajis on 2007-05-21 05:39:16 as ** along with 1 person mtagaya
  • RNAdb 2.0--an expanded database of mammalian non-coding RNAs.
    Nucleic Acids Res (1 December 2006)
    by Ken C C Pang, Stuart Stephen, Marcel E E Dinger, Pär G G Engström, Boris Lenhard, John S S Mattick
    posted to no-tag by balajis on 2007-05-21 05:39:05 as ** along with 4 people and 1 group jfr alexg andersbj mtagaya microRNA
  • fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by T Kin, K Yamada, G Terai, H Okida, Y Yoshinari, Y Ono, A Kojima, Y Kimura, T Komori, K Asai
    posted to no-tag by balajis on 2007-05-21 05:38:57 as ** along with 2 people and 1 group cdawson maralena GIG
  • National Center for Biomedical Ontology: advancing biomedicine through structured organization of scientific knowledge.
    OMICS, Vol. 10, No. 2. (2006), pp. 185-198.
    by DL Rubin, SE Lewis, CJ Mungall, S Misra, M Westerfield, M Ashburner, I Sim, CG Chute, H Solbrig, MA Storey, B Smith, J Day-Richter, NF Noy, MA Musen
    posted to no-tag by balajis on 2007-05-21 05:20:08 as ** along with 5 people and 3 groups irenas yas dullhunk RockHI sobolevnrm dbk-lab T_lab baker-group
  • The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data.
    Nat Biotechnol, Vol. 22, No. 2. (February 2004), pp. 177-183.
    by H Hermjakob, L Montecchi-Palazzi, G Bader, J Wojcik, L Salwinski, A Ceol, S Moore, S Orchard, U Sarkans, C von Mering, B Roechert, S Poux, E Jung, H Mersch, P Kersey, M Lappe, Y Li, R Zeng, D Rana, M Nikolski, H Husi, C Brun, K Shanker, SG Grant, C Sander, P Bork, W Zhu, A Pandey, A Brazma, B Jacq, M Vidal, D Sherman, P Legrain, G Cesareni, I Xenarios, D Eisenberg, B Steipe, C Hogue, R Apweiler
    posted to no-tag by balajis on 2007-05-21 05:18:13 as ** along with 5 people and 1 group irenas grahamc jmuhlich lpfernandes lenov dbk-lab
  • Further steps in standardisation. Report of the second annual Proteomics Standards Initiative Spring Workshop (Siena, Italy 17-20th April 2005).
    Proteomics, Vol. 5, No. 14. (September 2005), pp. 3552-3555.
    by S Orchard, H Hermjakob, CF Taylor, F Potthast, P Jones, W Zhu, RK Julian, R Apweiler
    posted to no-tag by balajis on 2007-05-21 05:17:39 as **
  • Representations of molecular pathways: an evaluation of SBML, PSI MI and BioPAX
    Bioinformatics, Vol. 21, No. 24. (15 December 2005), pp. 4401-4407.
    by Lena Stromback, Patrick Lambrix
    posted to no-tag by balajis on 2007-05-21 05:17:18 as ** along with 3 people and 2 groups kuhn wnpx dagmar dIEMoSIRIS compneur
  • Representing, storing and accessing molecular interaction data: a review of models and tools.
    Brief Bioinform, Vol. 7, No. 4. (December 2006), pp. 331-338.
    by L Strömbäck, V Jakoniene, H Tan, P Lambrix
    posted to no-tag by balajis on 2007-05-21 05:17:09 as ** along with 4 people and 1 group yas cjeans bootsy annacarina07 801
  • PAX of mind for pathway researchers.
    Drug Discov Today, Vol. 10, No. 13. (1 July 2005), pp. 937-942.
    by JS Luciano
    posted to no-tag by balajis on 2007-05-21 05:16:38 as ** along with 3 people wnpx dullhunk lenov
  • The evolution of CellML.
    Conf Proc IEEE Eng Med Biol Soc, Vol. 7 (2004), pp. 5411-5414.
    by P Nielsen, M Halstead
    posted to no-tag by balajis on 2007-05-21 05:16:11 as **
  • New developments in the InterPro database.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by NJ Mulder, R Apweiler, TK Attwood, A Bairoch, A Bateman, D Binns, P Bork, V Buillard, L Cerutti, R Copley, E Courcelle, U Das, L Daugherty, M Dibley, R Finn, W Fleischmann, J Gough, D Haft, N Hulo, S Hunter, D Kahn, A Kanapin, A Kejariwal, A Labarga, PS Langendijk-Genevaux, D Lonsdale, R Lopez, I Letunic, M Madera, J Maslen, C McAnulla, J McDowall, J Mistry, A Mitchell, AN Nikolskaya, S Orchard, C Orengo, R Petryszak, JD Selengut, CJ Sigrist, PD Thomas, F Valentin, D Wilson, CH Wu, C Yeats
    posted to no-tag by balajis on 2007-05-21 05:14:35 as ** along with 4 people jyuh sgoetz siebertm pablomendes
  • LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA.
    Genome Res, Vol. 13, No. 4. (April 2003), pp. 721-731.
    by M Brudno, CB Do, GM Cooper, MF Kim, E Davydov, ED Green, A Sidow, S Batzoglou,
    posted to no-tag by balajis on 2007-05-21 05:12:11 as ** along with 13 people and 1 group operon dpollard xwbcn dquest adepace hdopazo lusk Garamonfok adijr natstreet nklee Neeperando kcrawlik EisenLab
  • The thermodynamics of DNA structural motifs.
    Annu Rev Biophys Biomol Struct, Vol. 33 (2004), pp. 415-440.
    by J SantaLucia, D Hicks
    posted to no-tag by balajis on 2007-05-21 05:11:32 as ** along with 1 person stsaft
  • Human Genome Variation 2006: emerging views on structural variation and large-scale SNP analysis
    Nat Genet, Vol. 39, No. 2. (February 2007), pp. 153-155.
    by Goncalo Abecasis, Paul K Tam, Carlos D Bustamante, Elaine A Ostrander, Stephen W Scherer, Stephen J Chanock, Pui-Yan Kwok, Anthony J Brookes
    posted to no-tag by balajis on 2007-05-21 05:09:59 as ** along with 1 person and 3 groups dchughes Bioinformatics G4ID Genetics-of-Gambling
  • Genomic patterns of DNA methylation: targets and function of an epigenetic mark.
    Curr Opin Cell Biol (25 April 2007)
    by Michael Weber, Dirk Schübeler
    posted to no-tag by balajis on 2007-05-21 05:09:01 as ** along with 1 person Pezda
  • Chromosomes Through Space and Time
    Science, Vol. 301, No. 5634. (8 August 2003), 779.
    by Guy Riddihough
    posted to no-tag by balajis on 2007-05-21 05:08:33 as **
  • DNA topoisomerases: structure, function, and mechanism.
    Annu Rev Biochem, Vol. 70 (2001), pp. 369-413.
    by JJ Champoux
    posted to no-tag by balajis on 2007-05-21 05:07:32 as ** along with 2 people moonycinzia A_Coletta_Thesis
  • Genetics and Analysis of Quantitative Traits
    (19 January 1998)
    by Michael Lynch, Bruce Walsh
    posted to no-tag by balajis on 2007-05-21 05:02:51 as ** along with 3 people brant joepickrell tkdoerksen
  • The Genetic Basis of Thermal Reaction Norm Evolution in Lab and Natural Phage Populations
    PLoS Biology, Vol. 4, No. 7. (1 July 2006)
    by Jennifer L Knies, Rima Izem, Katie L Supler, Joel G Kingsolver, Christina L Burch
    posted to no-tag by balajis on 2007-05-21 05:02:21 as ** along with 2 people and 1 group stevanspringer cmm FAB-lab
  • iHOP web services.
    Nucleic Acids Res (7 May 2007)
    by José M M Fernández, Robert Hoffmann, Alfonso Valencia
    posted to no-tag by balajis on 2007-05-21 04:58:34 as ** along with 7 people and 1 group jyuh austin moborg dullhunk fisherp mroos alanrw AID
  • pSTIING: a 'systems' approach towards integrating signalling pathways, interaction and transcriptional regulatory networks in inflammation and cancer.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by A Ng, B Bursteinas, Q Gao, E Mollison, M Zvelebil
    posted to no-tag by balajis on 2007-05-21 04:56:51 as ** along with 1 person ptrobajo
  • A literature network of human genes for high-throughput analysis of gene expression.
    Nat Genet, Vol. 28, No. 1. (May 2001), pp. 21-28.
    by TK Jenssen, A Laegreid, J Komorowski, E Hovig
    posted to no-tag by balajis on 2007-05-21 04:55:51 as ** along with 9 people and 4 groups irenas miguel okarsligil lfriedl yas benny dullhunk adoms TheresaNiederberger dbk-lab kdl Bioinformatics T_lab
  • Gene trees and species trees are not the same.
    Trends Ecol Evol, Vol. 16, No. 7. (1 July 2001), pp. 358-364.
    by R Nichols
    posted to no-tag by balajis on 2007-05-21 04:14:37 as **
  • Relationships between gene trees and species trees.
    Mol Biol Evol, Vol. 5, No. 5. (September 1988), pp. 568-583.
    by P Pamilo, M Nei
    posted to no-tag by balajis on 2007-05-21 04:14:25 as **
  • Discordance of species trees with their most likely gene trees.
    PLoS Genet, Vol. 2, No. 5. (May 2006)
    by JH Degnan, NA Rosenberg
    posted to no-tag by balajis on 2007-05-21 04:13:48 as ** along with 2 people druvus shoshin
  • Comparison of protein interaction networks reveals species conservation and divergence.
    BMC Bioinformatics, Vol. 7 (17 October 2006), 457.
    by Zhi Liang, Meng Xu, Maikun Teng, Liwen Niu
    posted to no-tag by balajis on 2007-05-21 04:10:05 as ** along with 4 people and 1 group tharris biehl cerca carlk C. elegans / WormBase
  • Exploring genetic interactions and networks with yeast
    Nature Reviews Genetics, Vol. 8, No. 6., pp. 437-449.
    by Charles Boone, Howard Bussey, Brenda J Andrews
    posted to no-tag by balajis on 2007-05-21 04:08:27 as ** along with 5 people zwang carlk jyuh marck hryk
  • Evolution at the system level: the natural history of protein interaction networks.
    Trends Ecol Evol (30 April 2007)
    by Michael P H P Stumpf, William P P Kelly, Thomas Thorne, Carsten Wiuf
    posted to no-tag by balajis on 2007-05-21 04:07:57 as ** along with 1 person agustinarce
  • Pairwise alignment of protein interaction networks.
    J Comput Biol, Vol. 13, No. 2. (March 2006), pp. 182-199.
    by M Koyutürk, Y Kim, U Topkara, S Subramaniam, W Szpankowski, A Grama
    posted to no-tag by balajis on 2007-05-21 04:07:26 as ** along with 2 people koller carlk
  • Modeling cellular machinery through biological network comparison
    Nature Biotechnology, Vol. 24, No. 4. (06 April 2006), pp. 427-433.
    by Roded Sharan, Trey Ideker
    posted to no-tag by balajis on 2007-05-21 04:07:14 as ** along with 17 people and 2 groups isimpson tmmurali kuhn tuck yas wnpx ma_ko gurkanbebek koller gcalda grahamc massivemayhem karfunkel mingzhi vietanh0 cdeane carlk T_lab ParkinsonLab_at_MaRS
  • Alignment of molecular networks by integer quadratic programming.
    Bioinformatics (27 April 2007)
    by Zhenping Li, Shihua Zhang, Yong Wang, Xiang-Sun S Zhang, Luonan Chen
    posted to no-tag by balajis on 2007-05-21 04:05:31 as **
  • Evolution, Interactions, and Biological Networks
    PLoS Biology, Vol. 5, No. 1. (1 January 2007), e11.
    by Joshua S Weitz, Philip N Benfey, Ned S Wingreen
    posted to no-tag by balajis on 2007-05-21 04:04:37 as ** along with 14 people and 1 group eldan aalibes cmmorel wnpx cerkut jhatrimatri josepe timothee srfairclough hmk bootsy Ema bpcusack skumagai contact-id
  • Biological Sequence Analysis : Probabilistic Models of Proteins and Nucleic Acids
    (01 July 1999)
    by Richard Durbin, Sean R Eddy, Anders Krogh, Graeme Mitchison
    posted to no-tag by balajis on 2007-05-21 04:03:22 as ** along with 11 people and 1 group derek_farn stanley ujh pcahan1 indigoviolet moborg emranmohdtamil dullhunk rabio wenhan xiaobeizhao EisenLab
  • Performance evaluation of amino acid substitution matrices.
    Proteins, Vol. 17, No. 1. (September 1993), pp. 49-61.
    by S Henikoff, JG Henikoff
    posted to no-tag by balajis on 2007-05-21 04:02:15 as **
  • Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions (supplement).
    DNA Res, Vol. 3, No. 3. (30 June 1996), pp. 185-209.
    by T Kaneko, S Sato, H Kotani, A Tanaka, E Asamizu, Y Nakamura, N Miyajima, M Hirosawa, M Sugiura, S Sasamoto, T Kimura, T Hosouchi, A Matsuno, A Muraki, N Nakazaki, K Naruo, S Okumura, S Shimpo, C Takeuchi, T Wada, A Watanabe, M Yamada, M Yasuda, S Tabata
    posted to no-tag by balajis on 2007-05-21 04:00:03 as **
  • Gene prioritization through genomic data fusion
    Nature Biotechnology, Vol. 24, No. 5. (05 May 2006), pp. 537-544.
    by Stein Aerts, Diether Lambrechts, Sunit Maity, Peter Van Loo, Bert Coessens, Frederik De Smet, Leon-Charles Tranchevent, Bart De Moor, Peter Marynen, Bassem Hassan, Peter Carmeliet, Yves Moreau
    posted to no-tag by balajis on 2007-05-21 03:54:04 as ** along with 6 people and 2 groups jfr dchughes frohike winterschlaefer barriot srp33 G4ID Genetics-of-Gambling
  • Iterative Reconstruction of Transcriptional Regulatory Networks: An Algorithmic Approach
    PLoS Computational Biology, Vol. 2, No. 5. (1 May 2006), e52.
    by Christian L Barrett, Bernhard O Palsson
    posted to no-tag by balajis on 2007-05-21 03:53:18 as ** along with 2 people ccots aswin
  • The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures.
    Nucleic Acids Res (22 April 2007)
    by Andreas R R Gruber, Richard Neuböck, Ivo L L Hofacker, Stefan Washietl
    posted to no-tag by balajis on 2007-05-21 03:50:31 as ** along with 1 person ilh
  • CONTRAfold: RNA secondary structure prediction without physics-based models.
    Bioinformatics, Vol. 22, No. 14. (15 July 2006)
    by CB Do, DA Woods, S Batzoglou
    posted to no-tag by balajis on 2007-05-21 03:49:57 as ** along with 6 people and 3 groups marcius tardigrade penka condon acarbo austin beta BioinfoCIPF SGU-CIPF
  • Improving the Caenorhabditis elegans genome annotation using machine learning.
    PLoS Comput Biol, Vol. 3, No. 2. (23 February 2007)
    by G Rätsch, S Sonnenburg, J Srinivasan, H Witte, KR Müller, RJ Sommer, B Schölkopf
    posted to no-tag by balajis on 2007-05-21 03:48:15 as ** along with 3 people and 1 group tharris alexl wenhan C. elegans / WormBase
  • Integrated Assessment and Prediction of Transcription Factor Binding
    PLoS Computational Biology, Vol. 2, No. 6. (1 June 2006), e70.
    by Andreas Beyer, Christopher Workman, Jens Hollunder, Dörte Radke, Ulrich Möller, Thomas Wilhelm, Trey Ideker
    posted to no-tag by balajis on 2007-05-21 03:44:55 as ** along with 6 people and 1 group jfr wnpx emilyhare samal reidy Ao_Li2007 EisenLab
  • PA-GOSUB: a searchable database of model organism protein sequences with their predicted Gene Ontology molecular function and subcellular localization.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by P Lu, D Szafron, R Greiner, DS Wishart, A Fyshe, B Pearcy, B Poulin, R Eisner, D Ngo, N Lamb
    posted to no-tag by balajis on 2007-05-21 03:43:21 as **
  • Predicting functional family of novel enzymes irrespective of sequence similarity: a statistical learning approach.
    Nucleic Acids Res, Vol. 32, No. 21. (2004), pp. 6437-6444.
    by LY Han, CZ Cai, ZL Ji, ZW Cao, J Cui, YZ Chen
    posted to no-tag by balajis on 2007-05-21 03:41:10 as **
  • Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets
    Nature Genetics, Vol. 38, No. 3. (24 February 2006), pp. 285-293.
    by TKB Gandhi, Jun Zhong, Suresh Mathivanan, L Karthick, KN Chandrika, Sujatha S Mohan, Salil Sharma, Stefan Pinkert, Shilpa Nagaraju, Balamurugan Periaswamy, Goparani Mishra, Kannabiran Nandakumar, Beiyi Shen, Nandan Deshpande, Rashmi Nayak, Malabika Sarker, Jef D Boeke, Giovanni Parmigiani, Jörg Schultz, Joel S Bader, Akhilesh Pandey
    posted to no-tag by balajis on 2007-05-21 03:38:59 as ** along with 12 people and 2 groups aprildh31 indigoviolet tny spavey TheresaNiederberger cjeans alwinpremanand dejori Pao-Yang pmendes carlk cerca EisenLab FAB-lab
  • Evaluation of different biological data and computational classification methods for use in protein interaction prediction
    Proteins: Structure, Function, and Bioinformatics, Vol. 63, No. 3. (2006), pp. 490-500.
    by Yanjun Qi, Ziv Bar-Joseph, Judith Klein-Seetharaman
    posted to no-tag by balajis on 2007-05-21 03:33:58 as ** along with 4 people and 1 group penpen926 lptolik tmmurali lfriedl kdl
  • Apparent dependence of protein evolutionary rate on number of interactions is linked to biases in protein-protein interactions data sets.
    BMC Evol Biol, Vol. 3 (2 October 2003)
    by JD Bloom, C Adami
    posted to no-tag by balajis on 2007-05-21 03:32:02 as ** along with 3 people and 1 group bjorns penka rsantana Nie
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