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aswin library [167 articles]

最近 aswin さんのライブラリ .
  • Dynamics and interplay of nuclear architecture, genome organization, and gene expression.
    Genes Dev, Vol. 21, No. 23. (1 December 2007), pp. 3027-3043.
    by R Schneider, R Grosschedl
    posted to gene_expression genome_organization nuclear_architecture transcription by aswin on 2007-12-10 16:47:29 as ***** along with 2 people inesdesantiago sebastien_vigneau
  • An overview of image-processing methods for Affymetrix GeneChips.
    Brief Bioinform (5 December 2007)
    by Jose M M Arteaga-Salas, Harry Zuzan, William B B Langdon, Graham J G J Upton, Andrew P P Harrison
    posted to array image_processing methods by aswin on 2007-12-10 16:43:29 as ***** along with 2 people jfr yevishere
  • Distinct physiological states of Plasmodium falciparum in malaria-infected patients
    Nature (28 November 2007)
    by JP Daily, D Scanfeld, N Pochet, K Le Roch, D Plouffe, M Kamal, O Sarr, S Mboup, O Ndir, D Wypij, K Levasseur, E Thomas, P Tamayo, C Dong, Y Zhou, ES Lander, D Ndiaye, D Wirth, EA Winzeler, JP Mesirov, A Regev
    posted to malaria parasite plasmodium transcription by aswin on 2007-12-04 10:18:03 as ***** along with 2 people shuzhens tmmurali
  • The structural basis of cyclic diguanylate signal transduction by PilZ domains
    The EMBO Journal, Vol. aop, No. current. (22 November 2007)
    by Jordi Benach, Swarup S Swaminathan, Rita Tamayo, Samuel K Handelman, Ewa Folta-Stogniew, John E Ramos, Farhad Forouhar, Helen Neely, Jayaraman Seetharaman, Andrew Camilli, John F Hunt
    posted to cdigmp by aswin on 2007-11-26 11:39:30 as **
  • Optimization of probe length and the number of probes per gene for optimal microarray analysis of gene expression
    Nucl. Acids Res., Vol. 32, No. 12. (8 July 2004), e99.
    by Cheng-Chung Chou, Chun-Houh Chen, Te-Tsui Lee, Konan Peck
    posted to probe by aswin on 2007-11-21 14:09:49 as ***** along with 2 people bertelsen stsaft
  • Exploring Expression Data: Identification and Analysis of Coexpressed Genes
    Genome Res., Vol. 9, No. 11. (1 November 1999), pp. 1106-1115.
    by Laurie J Heyer, Semyon Kruglyak, Shibu Yooseph
    posted to no-tag by aswin on 2007-11-13 17:05:56 as ****
  • Bacterial morphology: why have different shapes?
    Curr Opin Microbiol (1 November 2007)
    by Kevin D D Young
    posted to bacteria shape size by aswin on 2007-11-08 16:45:50 as ***** along with 1 person and 1 group friveroll APCM
  • Functional Specificity among Ribosomal Proteins Regulates Gene Expression.
    Cell, Vol. 131, No. 3. (2 November 2007), pp. 557-571.
    by S Komili, NG Farny, FP Roth, PA Silver
    posted to duplication ribosom yeast by aswin on 2007-11-08 16:44:33 as ***** along with 2 people stajich cjeans
  • Legionella pneumophila proteins that regulate Rab1 membrane cycling
    Nature (21 October 2007)
    by Alyssa Ingmundson, Anna Delprato, David G Lambright, Craig R Roy
    posted to host legionella by aswin on 2007-10-31 12:22:08 as ****
  • Engineered bidirectional communication mediates a consensus in a microbial biofilm consortium.
    Proc Natl Acad Sci U S A (24 October 2007)
    by Katie Brenner, David K K Karig, Ron Weiss, Frances H H Arnold
    posted to biofilm community by aswin on 2007-10-31 12:21:55 as ***** along with 1 person austin
  • Genetic basis of proteome variation in yeast
    Nature Genetics, Vol. 39, No. 11. (21 October 2007), pp. 1369-1375.
    by Eric J Foss, Dragan Radulovic, Scott A Shaffer, Douglas M Ruderfer, Antonio Bedalov, David R Goodlett, Leonid Kruglyak
    posted to proteome variation yeast by aswin on 2007-10-31 12:21:41 as ***** along with 5 people balicea lp2 roys caseybrown emptyhb
  • A Universal Framework for Regulatory Element Discovery across All Genomes and Data Types.
    Mol Cell, Vol. 28, No. 2. (26 October 2007), pp. 337-350.
    by O Elemento, N Slonim, S Tavazoie
    posted to motif regulation by aswin on 2007-10-31 12:13:41 as ***** along with 12 people and 2 groups ana brant cwbrown cjeans zwang cabbagezs nklee maximilianh idonaldson sb_journal_club kristen barwil EisenLab Motif Discovery
  • Life in Darwin's dust: intercontinental transport and survival of microbes in the nineteenth century.
    Environ Microbiol (23 October 2007)
    by Anna A A Gorbushina, Renate Kort, Anette Schulte, David Lazarus, Bernhard Schnetger, Hans-Jürgen J Brumsack, William J J Broughton, Jocelyne Favet
    posted to bacteria survival by aswin on 2007-10-31 12:08:37 as ****
  • The evolution of genetic networks by non-adaptive processes
    Nature Reviews Genetics, Vol. 8, No. 10., pp. 803-813.
    by Michael Lynch
    posted to evolution network transcription by aswin on 2007-10-16 21:36:40 as ***** along with 10 people and 2 groups lusk brant balicea dchughes stajich margaritis zwang nosada17 Stew lilith G4ID Genetics-of-Gambling
  • Chemosensory pathways, motility and development in Myxococcus xanthus.
    Nat Rev Microbiol (8 October 2007)
    by David R R Zusman, Ansley E E Scott, Zhaomin Yang, John R R Kirby
    posted to motility myxococcus by aswin on 2007-10-16 21:35:34 as *** along with 1 person RebeccaHamer
  • Type VII secretion - mycobacteria show the way.
    Nat Rev Microbiol (8 October 2007)
    by Abdallah M M Abdallah, Nicolaas C C Gey van Pittius, Patricia A A Digiuseppe Champion, Jeffery Cox, Joen Luirink, Christina M J E M Vandenbroucke-Grauls, Ben J J Appelmelk, Wilbert Bitter
    posted to mycobacteria secretion by aswin on 2007-10-16 21:35:15 as ***** along with 1 person xingxu
  • Cyclic diguanylate is a ubiquitous signaling molecule in bacteria: insights into biochemistry of the GGDEF protein domain.
    J Bacteriol, Vol. 187, No. 5. (March 2005), pp. 1792-1798.
    by DA Ryjenkov, M Tarutina, OV Moskvin, M Gomelsky
    posted to cdigmp by aswin on 2007-10-08 16:24:42 as *****
  • Cyclic-diGMP signal transduction systems in Vibrio cholerae: modulation of rugosity and biofilm formation
    Molecular Microbiology, Vol. 60, No. 2. (April 2006), pp. 331-348.
    by Bentley Lim, Sinem Beyhan, James Meir, Fitnat H Yildiz
    posted to cdigmp by aswin on 2007-10-08 16:23:57 as ***** along with 1 person CareyNadell
  • Structural classification of bacterial response regulators: diversity of output domains and domain combinations.
    J Bacteriol, Vol. 188, No. 12. (June 2006), pp. 4169-4182.
    by MY Galperin
    posted to cdigmp by aswin on 2007-10-08 16:23:10 as *****
  • The HD domain defines a new superfamily of metal-dependent phosphohydrolases
    Trends in Biochemical Sciences, Vol. 23, No. 12. (1 December 1998), pp. 469-472.
    by L Aravind, Eugene V Koonin
    posted to cdigmp by aswin on 2007-10-08 16:22:47 as *****
  • The protein network of bacterial motility
    Mol Syst Biol, Vol. 3 (31 July 2007)
    by Seesandra V Rajagopala, Bjorn Titz, Johannes Goll, Jodi R Parrish, Katrin Wohlbold, Matthew T Mckevitt, Timothy Palzkill, Hirotada Mori, Russell L Finley, Peter Uetz
    posted to bacteria motility protein_network by aswin on 2007-08-08 12:40:16 as ***** along with 6 people and 4 groups cerca carlk grahamc jmrivort zwang Pao-Yang G-quadruplex Supramolecular ParkinsonLab_at_MaRS OPIG
  • A metabolic sensor governing cell size in bacteria.
    Cell, Vol. 130, No. 2. (27 July 2007), pp. 335-347.
    by RB Weart, AH Lee, AC Chien, DP Haeusser, NS Hill, PA Levin
    posted to bacteria nutrient by aswin on 2007-07-31 11:45:56 as ***** along with 2 people jjray margaritis
  • Modelling Transcriptional Interference and DNA Looping in Gene Regulation
    Journal of Molecular Biology, Vol. 369, No. 5. (22 June 2007), pp. 1200-1213.
    by Ian B Dodd, Keith E Shearwin, Kim Sneppen
    posted to looping phage by aswin on 2007-06-05 12:39:30 as ****
  • Distinctive Topologies of Partner-switching Signaling Networks Correlate with their Physiological Roles.
    J Mol Biol, Vol. 369, No. 5. (22 June 2007), pp. 1333-1352.
    by OA Igoshin, MS Brody, CW Price, MA Savageau
    posted to bacillus network by aswin on 2007-06-05 12:23:51 as ***** along with 1 person jjray
  • Genome-Wide Mapping of in Vivo Protein-DNA Interactions
    Science (31 May 2007), 1141319.
    by David S Johnson, Ali Mortazavi, Richard M Myers, Barbara Wold
    posted to chip sequencing by aswin on 2007-06-04 12:09:26 as ***** along with 17 people and 5 groups aalibes balicea andersbj JeremyZucker kengg giovanni cjeans ghattem zwang epigenetics biomcgary george_g cabbagezs Jporci blobbybirdman caseybrown emptyhb Bioinformatics microRNA Marcotte_Lab UH - Computational Biology Myxo group
  • Control of gene expression in trypanosomes
    Microbiol. Rev., Vol. 59, No. 2. (1 June 1995), pp. 223-240.
    by L Vanhamme, E Pays
    posted to trypanosome by aswin on 2007-05-25 15:27:42 as ****
  • Dynamics of intracellular metabolites of glycolysis and TCA cycle during cell-cycle-related oscillation in Saccharomyces cerevisiae.
    Biotechnol Bioeng, Vol. 89, No. 7. (30 March 2005), pp. 839-847.
    by C Wittmann, M Hans, WA van Winden, C Ras, JJ Heijnen
    posted to cell-cycle metabolism yeast by aswin on 2007-05-22 16:39:20 as *****
  • TFmodeller: comparative modelling of protein-DNA complexes.
    Bioinformatics (25 April 2007)
    by Bruno Contreras-Moreira, Pierre-Alain A Branger, Julio Collado-Vides
    posted to protein-dna by aswin on 2007-05-01 13:43:07 as ****
  • High-throughput identification of transcription start sites, conserved promoter motifs and predicted regulons.
    Nat Biotechnol (1 April 2007)
    by Patrick T T McGrath, Honglak Lee, Li Zhang, Antonio A A Iniesta, Alison K K Hottes, Meng How H Tan, Nathan J J Hillson, Ping Hu, Lucy Shapiro, Harley H H McAdams
    posted to caulobacter tiling by aswin on 2007-04-19 17:22:31 as **** along with 1 person zwang
  • DNA replication initiation: mechanisms and regulation in bacteria
    Nature Reviews Microbiology, Vol. 5, No. 5., pp. 343-354.
    by Melissa L Mott, James M Berger
    posted to e_coli replication by aswin on 2007-04-18 17:46:28 as ***** along with 1 person Petersarkies
  • The origin of eukaryotes: a reappraisal.
    Nat Rev Genet (12 April 2007)
    by Christian de Duve
    posted to eukaryotes by aswin on 2007-04-16 11:59:14 as ***** along with 2 people and 2 groups dchughes dandaman G4ID Genetics-of-Gambling
  • Just-in-time transcription program in metabolic pathways.
    Nat Genet, Vol. 36, No. 5. (May 2004), pp. 486-491.
    by A Zaslaver, AE Mayo, R Rosenberg, P Bashkin, H Sberro, M Tsalyuk, MG Surette, U Alon
    posted to jit by aswin on 2007-04-16 10:02:02 as ***** along with 3 people imouthesmp Norlins comb
  • Posttranscriptional Expression Regulation: What Determines Translation Rates?
    PLoS Comput Biol, Vol. 3, No. 3. (23 March 2007)
    by Regina Brockmann, Andreas Beyer, Jürgen J J Heinisch, Thomas Wilhelm
    posted to translation by aswin on 2007-03-29 13:30:59 as ***** along with 3 people and 1 group gpalidwor oelemento roys Bioinformatics
  • The role of small RNAs in quorum sensing.
    Curr Opin Microbiol (24 March 2007)
    by Michal Bejerano-Sagie, Karina Bivar B Xavier
    posted to qs srna by aswin on 2007-03-29 13:21:29 as *****
  • Metabolic modeling of a mutualistic microbial community.
    Mol Syst Biol, Vol. 3 (2007)
    by S Stolyar, S Van Dien, KL Hillesland, N Pinel, TJ Lie, JA Leigh, DA Stahl
    posted to community fba by aswin on 2007-03-20 16:14:32 as ***** along with 4 people and 2 groups athleem JeremyZucker OriginalLurch cjeans MetabolicModeling clab
  • Regulation of metabolic networks by small molecule metabolites
    BMC Bioinformatics, Vol. 8 (13 March 2007), 88.
    by Alex Gutteridge, Minoru Kanehisa, Susumu Goto
    posted to metabolic transcription by aswin on 2007-03-20 12:26:11 as ***** along with 1 person and 1 group shung Bioinformatics
  • Metabolic systems cost-benefit analysis for interpreting network structure and regulation.
    Bioinformatics (7 March 2007)
    by Ross P P Carlson
    posted to flux metabolic metabolism by aswin on 2007-03-20 12:24:21 as *****
  • Dose Response Relationship in Anti-Stress Gene Regulatory Networks
    PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e24.
    by Qiang Zhang, Melvin E Andersen
    posted to modelling stress by aswin on 2007-03-07 11:54:20 as ***** along with 2 people dquest margaritis
  • Stationary phase reorganisation of the Escherichia coli transcription machinery by Crl protein, a fine-tuner of [sigma]s activity and levels
    The EMBO Journal, Vol. aop, No. current. (01 March 2007)
    by Athanasios Typas, Claudia Barembruch, Alexandra Possling, Regine Hengge
    posted to crl stationary_phase by aswin on 2007-03-06 16:18:31 as *****
  • Positioning of chemosensory clusters in E. coli and its relation to cell division
    The EMBO Journal, Vol. aop, No. current. (01 March 2007)
    by Sebastian Thiem, David Kentner, Victor Sourjik
    posted to ecoli sensory spatial by aswin on 2007-03-06 16:17:35 as *****
  • The small nucleoid protein Fis is involved in Vibrio cholerae quorum sensing
    Molecular Microbiology, Vol. 63, No. 3. (February 2007), pp. 859-871.
    by Lenz, H Derrick, Bassler, L Bonnie
    posted to no-tag by aswin on 2007-02-21 16:26:36 as ***** along with 1 person CareyNadell
  • The molecular basis of selective promoter activation by the sigma subunit of RNA polymerase.
    Mol Microbiol, Vol. 63, No. 5. (March 2007), pp. 1296-1306.
    by A Typas, G Becker, R Hengge
    posted to no-tag by aswin on 2007-02-21 16:26:31 as ***** along with 1 person shana
  • Cross-talk between type three secretion and flagellar assembly in Pseudomonas aeruginosa.
    J Bacteriol (16 February 2007)
    by Chantal Soscia, Abderrahman Hachani, Alain Bernadac, Alain Filloux, Sophie Bleves
    posted to no-tag by aswin on 2007-02-21 16:26:26 as ***** along with 1 person martainn
  • Repression of intracellular virulence factors in Salmonella by the Hha and YdgT nucleoid-associated proteins.
    J Bacteriol (16 February 2007)
    by Umaporn Silphaduang, Mariola Mascarenhas, Mohamed Karmali, Brian K K Coombes
    posted to no-tag by aswin on 2007-02-21 16:26:22 as *****
  • Signaling pathways activated by microorganisms.
    Curr Opin Cell Biol (13 February 2007)
    by Osamu Takeuchi, Shizuo Akira
    posted to bacteria signaling by aswin on 2007-02-20 17:44:57 as *****
  • Nutrient-regulated gene expression in eukaryotes.
    Biochem Soc Symp, No. 73. (2006), pp. 85-96.
    by RJ Reece, L Beynon, S Holden, AD Hughes, K Rébora, CA Sellick
    posted to metabolism transcription yeast by aswin on 2007-02-13 23:02:37 as **
  • The highly cooperative folding of small naturally occurring proteins is likely the result of natural selection.
    Cell, Vol. 128, No. 3. (9 February 2007), pp. 613-624.
    by AL Watters, P Deka, C Corrent, D Callender, G Varani, T Sosnick, D Baker
    posted to evolution folding by aswin on 2007-02-12 14:03:28 as *** along with 3 people and 1 group aalibes dpollard martainn EisenLab
  • Cross-talk and decision making in MAP kinase pathways.
    Nat Genet (28 January 2007)
    by Megan N N McClean, Areez Mody, James R R Broach, Sharad Ramanathan
    posted to modelling mapk by aswin on 2007-02-09 13:56:06 as ***** along with 3 people and 1 group ccots jjray arne dIEMoSIRIS
  • The performance of the translational apparatus varies with the ecological strategies of bacteria.
    J Bacteriol (2 February 2007)
    by Les Dethlefsen, Thomas M M Schmidt
    posted to translation by aswin on 2007-02-09 13:43:02 as *****
  • Robustness Can Evolve Gradually in Complex Regulatory Gene Networks with Varying Topology
    PLoS Computational Biology, Vol. 3, No. 2. (1 February 2007), e15.
    by Stefano Ciliberti, Olivier C Martin, Andreas Wagner
    posted to robustness network abstract_stuff by aswin on 2007-02-05 12:36:52 as **** along with 14 people and 5 groups eldan ccots indigoviolet emilyhare malcook entropy nickluscombe kengg dolhuis timflutre grahamc shigepong kynn carneiro EisenLab EBI-regulation SNE ParkinsonLab_at_MaRS Plantandetc
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