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arcticrasta library [136 articles]

最近 arcticrasta さんのライブラリ .
  • Identification and Classification of Conserved RNA Secondary Structures in the Human Genome.
    PLoS Comput Biol, Vol. 2, No. 4. (21 April 2006)
    by Jakob S Pedersen, Gill Bejerano, Adam Siepel, Kate Rosenbloom, Kerstin Lindblad-Toh, Eric SS Lander, Jim Kent, Webb Miller, David Haussler
    posted to bioinformatics gene rna search by arcticrasta on 2006-06-22 18:40:38 as ** along with 11 people and 2 groups hpaces marcius eckart_bindewald tardigrade tabu mtagaya Eonwe ilh djkt raylim tale BioinfoCIPF SGU-CIPF
  • Consensus folding of aligned sequences as a new measure for the detection of functional RNAs by comparative genomics.
    J Mol Biol, Vol. 342, No. 1. (3 September 2004), pp. 19-30.
    by S Washietl, IL Hofacker
    posted to bioinformatics gene rna search by arcticrasta on 2006-06-22 17:48:15 as ** along with 4 people dayjm Eonwe ilh elfar
  • HyPaLib: a database of RNAs and RNA structural elements defined by hybrid patterns
    Nucl. Acids Res., Vol. 29, No. 1. (1 January 2001), pp. 196-198.
    by Stefan Graf, Dirk Strothmann, Stefan Kurtz, Gerhard Steger
    posted to bioinformatics pattern rna search by arcticrasta on 2006-06-22 10:11:16 as ** along with 1 person Eonwe
  • GUUGle: a utility for fast exact matching under RNA complementary rules including G-U base pairing.
    Bioinformatics, Vol. 22, No. 6. (15 March 2006), pp. 762-764.
    by W Gerlach, R Giegerich
    posted to bioinformatics motif rna search by arcticrasta on 2006-06-21 16:57:29 as ** along with 1 person and 1 group andersbj microRNA
  • Human MicroRNA targets.
    PLoS Biol, Vol. 2, No. 11. (November 2004)
    by B John, AJ Enright, A Aravin, T Tuschl, C Sander, DS Marks
    posted to bioinformatics mirna rna targets by arcticrasta on 2006-06-21 16:26:23 as ** along with 11 people and 2 groups jfr eckart_bindewald tardigrade mortenlindow dsm mtagaya ealloza wulanw heliopais jdiezperezj Alexander_Kanitz microRNA BioinfoCIPF
  • A method for aligning RNA secondary structures and its application to RNA motif detection.
    BMC Bioinformatics, Vol. 6 (2005)
    by J Liu, JT Wang, J Hu, B Tian
    posted to bioinformatics homology rna search by arcticrasta on 2006-06-20 19:25:59 as ** along with 2 people and 1 group vwchan emidio_capriotti beta
  • Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles.
    J Mol Biol, Vol. 313, No. 5. (9 November 2001), pp. 1003-1011.
    by D Gautheret, A Lambert
    posted to bioinformatics homology rna search by arcticrasta on 2006-06-20 18:40:37 as ** along with 1 person evaf
  • Pair hidden Markov models on tree structures.
    Bioinformatics, Vol. 19 Suppl 1 (2003)
    by Y Sakakibara
    posted to bioinformatics homology rna search by arcticrasta on 2006-06-20 17:49:45 as **
  • Sequence-based heuristics for faster annotation of non-coding RNA families.
    Bioinformatics (2 November 2005)
    by Zasha Weinberg, Walter LL Ruzzo
    posted to bioinformatics homology rna search by arcticrasta on 2006-06-20 17:32:57 as ** along with 1 person jwortman
  • Rapid and sensitive sequence comparison with FASTP and FASTA.
    Methods Enzymol, Vol. 183 (1990), pp. 63-98.
    by WR Pearson
    posted to bioinformatics homology search by arcticrasta on 2006-06-17 12:20:05 as ** along with 4 people granujilla jmeppley treangen jlh64
  • Improved tools for biological sequence comparison.
    Proc Natl Acad Sci U S A, Vol. 85, No. 8. (April 1988), pp. 2444-2448.
    by WR Pearson, DJ Lipman
    posted to bioinformatics homology search by arcticrasta on 2006-06-17 10:31:06 as ** along with 8 people and 2 groups Ema ffranca gurkanbebek bsmagic CitoJam lusk cjeans sujaikumar Bioinformatics bioinplant
  • Basic local alignment search tool.
    J Mol Biol, Vol. 215, No. 3. (5 October 1990), pp. 403-410.
    by SF Altschul, W Gish, W Miller, EW Myers, DJ Lipman
    posted to bioinformatics homology search by arcticrasta on 2006-06-17 09:07:50 as ** along with 41 people and 5 groups granujilla benwei ashaytan camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea yas balajis alexg indigoviolet moborg dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel Thaverkamp shung marti hervelequere dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology
  • An algorithm for detecting homologues of known structured RNAs in genomes.
    Proc IEEE Comput Syst Bioinform Conf (2004), pp. 300-310.
    by SY Le, JV Maizel, K Zhang
    posted to bioinformatics homology rna search by arcticrasta on 2006-06-16 16:33:03 as ** along with 2 people and 4 groups marcius bsmagic Bioinformatics BioinfoCIPF bioinplant SGU-CIPF
  • Revolutions in RNA Secondary Structure Prediction
    Journal of Molecular Biology, Vol. 359, No. 3. (9 June 2006), pp. 526-532.
    by David H Mathews
    posted to bioinformatics prediction rna secondary structure by arcticrasta on 2006-06-15 19:13:09 as ** along with 9 people and 2 groups austin winterschlaefer marcius penka Eonwe cthachuk emidio_capriotti physics maralena BioinfoCIPF SGU-CIPF
  • Vienna RNA secondary structure server.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3429-3431.
    by IL Hofacker
    posted to bioinformatics prediction rna secondary structure by arcticrasta on 2006-06-15 16:06:11 as ** along with 10 people reyez evaf dayjm eckart_bindewald balicea mtagaya dquest ilh onufriev maralena
  • Prediction of RNA secondary structure based on helical regions distribution
    Bioinformatics, Vol. 14, No. 8. (1 September 1998), pp. 700-706.
    by L Wuju, W Jiajin
    posted to bioinformatics rna secondary statistical structure by arcticrasta on 2006-06-15 14:26:35 as **
  • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
    Nucleic Acids Res, Vol. 22, No. 22. (11 November 1994), pp. 4673-4680.
    by JD Thompson, DG Higgins, TJ Gibson
    posted to alignment sequence by arcticrasta on 2006-06-12 19:02:01 as ** along with 22 people and 1 group newton1234 jmw greger_halltorp jshapiro mercaptan evaf caldavis miguel onlyrey bjorns aprasad RMGraze moborg dullhunk caporaso ahanora Haggan BioNica leelarcombe timflutre adijr xingxu biomedical-nlp
  • RAGA: RNA sequence alignment by genetic algorithm
    Nucl. Acids Res., Vol. 25, No. 22. (15 November 1997), pp. 4570-4580.
    by C Notredame, Ea O'Brien, Dg Higgins
    posted to bioinformatics comparative prediction rna secondary structure by arcticrasta on 2006-06-07 15:31:15 as **
  • Edit distance between two RNA structures
    (2001), pp. 211-220.
    by Guo H Lin, Bin Ma, Kaizhong Zhang
    posted to bioinformatics comparative prediction rna secondary structure by arcticrasta on 2006-06-07 15:10:55 as **
  • MARNA: multiple alignment and consensus structure prediction of RNAs based on sequence structure comparisons.
    Bioinformatics, Vol. 21, No. 16. (15 August 2005), pp. 3352-3359.
    by S Siebert, R Backofen
    posted to bioinformatics comparative prediction rna secondary structure by arcticrasta on 2006-06-07 14:54:26 as ** along with 2 people and 2 groups marcius ilh BioinfoCIPF SGU-CIPF
  • Local similarity in RNA secondary structures.
    Proc IEEE Comput Soc Bioinform Conf, Vol. 2 (2003), pp. 159-168.
    by M Höchsmann, T Töller, R Giegerich, S Kurtz
    posted to bioinformatics comparative prediction rna secondary structure by arcticrasta on 2006-06-07 14:39:30 as **
  • A graph theoretical approach for predicting common RNA secondary structure motifs including pseudoknots in unaligned sequences.
    Bioinformatics, Vol. 20, No. 10. (10 July 2004), pp. 1591-1602.
    by Y Ji, X Xu, GD Stormo
    posted to bioinformatics comparative prediction rna secondary structure by arcticrasta on 2006-06-06 20:10:10 as **
  • Discovering common stem-loop motifs in unaligned RNA sequences.
    Nucleic Acids Res, Vol. 29, No. 10. (15 May 2001), pp. 2135-2144.
    by J Gorodkin, SL Stricklin, GD Stormo
    posted to bioinformatics comparative prediction rna secondary structure by arcticrasta on 2006-06-06 19:57:58 as ** along with 1 person evaf
  • The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by JH Havgaard, RB Lyngsø, J Gorodkin
    posted to bioinformatics comparative prediction rna secondary structure by arcticrasta on 2006-06-06 19:00:59 as ** along with 1 person and 1 group condon beta
  • Finding the most significant common sequence and structure motifs in a set of RNA sequences.
    Nucleic Acids Res, Vol. 25, No. 18. (15 September 1997), pp. 3724-3732.
    by J Gorodkin, LJ Heyer, GD Stormo
    posted to bioinformatics comparative prediction rna secondary structure by arcticrasta on 2006-06-06 18:55:32 as ** along with 1 person evaf
  • Predicting a set of minimal free energy RNA secondary structures common to two sequences.
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2246-2253.
    by DH Mathews
    posted to bioinformatics comparative prediction rna secondary structure by arcticrasta on 2006-06-06 16:10:58 as ** along with 3 people and 2 groups austin marcius eckart_bindewald BioinfoCIPF SGU-CIPF
  • Dynalign: an algorithm for finding the secondary structure common to two RNA sequences.
    J Mol Biol, Vol. 317, No. 2. (22 March 2002), pp. 191-203.
    by DH Mathews, DH Turner
    posted to bioinformatics comparative prediction rna secondary structure by arcticrasta on 2006-06-06 16:08:13 as ** along with 1 person evaf
  • Accelerated probabilistic inference of RNA structure evolution.
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by I Holmes
    posted to bioinformatics comparative prediction rna secondary structure by arcticrasta on 2006-06-06 16:04:20 as **
  • Alignment of RNA base pairing probability matrices.
    Bioinformatics, Vol. 20, No. 14. (22 September 2004), pp. 2222-2227.
    by IL Hofacker, SH Bernhart, PF Stadler
    posted to bioinformatics comparative prediction rna secondary structure by arcticrasta on 2006-06-06 15:59:22 as ** along with 2 people reyez ilh
  • CARNAC: folding families of related RNAs.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by H Touzet, O Perriquet
    posted to bioinformatics comparative prediction rna secondary structure by arcticrasta on 2006-06-06 15:55:41 as **
  • CMfinder--a covariance model based RNA motif finding algorithm.
    Bioinformatics, Vol. 22, No. 4. (15 February 2006), pp. 445-452.
    by Z Yao, Z Weinberg, WL Ruzzo
    posted to bioinformatics comparative prediction rna secondary structure by arcticrasta on 2006-06-06 15:51:42 as ** along with 1 person and 2 groups bsmagic Bioinformatics bioinplant
  • An RNA folding method capable of identifying pseudoknots and base triples
    Bioinformatics, Vol. 14, No. 8. (1 September 1998), pp. 691-699.
    by Je Tabaska, Rb Cary, Hn Gabow, Gd Stormo
    posted to bioinformatics comparative prediction pseudoknots rna secondary structure by arcticrasta on 2006-06-06 09:33:51 as ** along with 1 person guxiyou
  • Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
    Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2611-2617.
    by H Matsui, K Sato, Y Sakakibara
    posted to bioinformatics comparative prediction pseudoknot rna secondary structure by arcticrasta on 2006-06-05 19:21:10 as **
  • Predicting RNA structure using mutual information.
    Appl Bioinformatics, Vol. 4, No. 1. (2005), pp. 53-59.
    by E Freyhult, V Moulton, P Gardner
    posted to bioinformatics comparative prediction rna secondary structure by arcticrasta on 2006-06-05 19:16:34 as ** along with 4 people and 2 groups evaf marcius eckart_bindewald eweaver BioinfoCIPF SGU-CIPF
  • BayesFold: rational 2 degrees folds that combine thermodynamic, covariation, and chemical data for aligned RNA sequences.
    RNA, Vol. 10, No. 9. (September 2004), pp. 1323-1336.
    by R Knight, A Birmingham, M Yarus
    posted to bioinformatics comparative prediction rna secondary structure by arcticrasta on 2006-06-05 18:06:35 as **
  • RNA secondary structure prediction based on free energy and phylogenetic analysis.
    J Mol Biol, Vol. 289, No. 4. (18 June 1999), pp. 935-947.
    by V Juan, C Wilson
    posted to bioinformatics comparative prediction rna secondary structure by arcticrasta on 2006-06-05 18:04:09 as ** along with 1 person eckart_bindewald
  • Prediction of common secondary structures of RNAs: a genetic algorithm approach
    Nucl. Acids Res., Vol. 28, No. 4. (15 February 2000), pp. 991-999.
    by Jih-H Chen, Shu-Yun Le, Jacob V Maizel
    posted to bioinformatics comparative genetic_algorithm prediction rna secondary structure by arcticrasta on 2006-06-05 15:12:47 as **
  • ConStruct: a tool for thermodynamic controlled prediction of conserved secondary structure.
    Nucleic Acids Res, Vol. 27, No. 21. (1 November 1999), pp. 4208-4217.
    by R Lück, S Gräf, G Steger
    posted to bioinformatics comparative prediction rna secondary structure by arcticrasta on 2006-06-05 14:17:37 as **
  • A comparative method for finding and folding RNA secondary structures within protein-coding regions.
    Nucleic Acids Res, Vol. 32, No. 16. (2004), pp. 4925-4936.
    by JS Pedersen, IM Meyer, R Forsberg, P Simmonds, J Hein
    posted to comparative prediction rna secondary structure by arcticrasta on 2006-06-05 14:02:55 as ** along with 1 person eckart_bindewald
  • Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction.
    BMC Bioinformatics, Vol. 5 (5 August 2004)
    by KJ Doshi, JJ Cannone, CW Cobaugh, RR Gutell
    posted to bioinformatics evaluation mfold rna secondary structure by arcticrasta on 2006-05-18 13:06:43 as ** along with 1 person eckart_bindewald
  • RNA secondary structure: physical and computational aspects.
    Q Rev Biophys, Vol. 33, No. 3. (August 2000), pp. 199-253.
    by PG Higgs
    posted to bioinformatics rna secondary structure by arcticrasta on 2006-05-15 15:05:17 as ** along with 2 people and 2 groups marcius penka BioinfoCIPF SGU-CIPF
  • A complex adaptive systems approach to the kinetic folding of RNA.
    Biosystems, Vol. 82, No. 3. (December 2005), pp. 257-265.
    by W Ndifon
    posted to bioinformatics kinetics rna secondary structure by arcticrasta on 2006-05-10 14:43:47 as ** along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • The equilibrium partition function and base pair binding probabilities for RNA secondary structure.
    Biopolymers, Vol. 29, No. 6-7. (n 1990), pp. 1105-1119.
    by JS Mccaskill
    posted to bioinformatics function partition rna secondary structure by arcticrasta on 2006-05-10 10:08:47 as ** along with 5 people and 3 groups evaf marcius condon Hosna Kiarostami beta BioinfoCIPF SGU-CIPF
  • RNA folding at elementary step resolution.
    RNA, Vol. 6, No. 3. (March 2000), pp. 325-338.
    by C Flamm, W Fontana, IL Hofacker, P Schuster
    posted to bioinformatics folding kinetic rna secondary structure by arcticrasta on 2006-05-10 09:56:54 as ** along with 4 people austin ilh mtw Kiarostami
  • RDfolder: a web server for prediction of RNA secondary structure.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by X Ying, H Luo, J Luo, W Li
    posted to bioinformatics rna secondary structure by arcticrasta on 2006-05-09 18:45:13 as ** along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • A bayesian statistical algorithm for RNA secondary structure prediction.
    Comput Chem, Vol. 23, No. 3-4. (15 June 1999), pp. 387-400.
    by Y Ding, CE Lawrence
    posted to bayesian bioinformatics function partition rna secondary structure by arcticrasta on 2006-05-06 19:28:21 as ** along with 3 people and 3 groups marcius eckart_bindewald condon beta BioinfoCIPF SGU-CIPF
  • An algorithm for computing nucleic acid base-pairing probabilities including pseudoknots.
    J Comput Chem, Vol. 25, No. 10. (30 July 2004), pp. 1295-1304.
    by RM Dirks, NA Pierce
    posted to bioinformatics function partition rna secondary structure by arcticrasta on 2006-05-06 19:17:04 as ** along with 2 people evaf miyake
  • Kinetics of an RNA conformational switch.
    Proc Natl Acad Sci U S A, Vol. 91, No. 8. (12 April 1994), pp. 3373-3377.
    by KA Lecuyer, DM Crothers
    posted to conformational kinetics rna secondary structure switch by arcticrasta on 2006-05-05 18:49:57 as ** along with 1 person physics
  • RNALOSS: a web server for RNA locally optimal secondary structures.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by P Clote
    posted to bioinformatics prediction rna secondary structure webserver by arcticrasta on 2006-05-04 20:34:40 as ** along with 2 people and 3 groups marcius condon beta BioinfoCIPF SGU-CIPF
  • RNAshapes: an integrated RNA analysis package based on abstract shapes.
    Bioinformatics, Vol. 22, No. 4. (15 February 2006), pp. 500-503.
    by P Steffen, B Voss, M Rehmsmeier, J Reeder, R Giegerich
    posted to bioinformatics rna secondary structure by arcticrasta on 2006-05-04 20:03:04 as **
    • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/user/arcticrasta

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