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ana library [516 articles]

最近 ana さんのライブラリ .
  • A Universal Framework for Regulatory Element Discovery across All Genomes and Data Types.
    Mol Cell, Vol. 28, No. 2. (26 October 2007), pp. 337-350.
    by O Elemento, N Slonim, S Tavazoie
    posted to no-tag by ana on 2007-11-20 02:02:46 as ** along with 12 people and 2 groups brant cwbrown aswin cjeans zwang cabbagezs nklee maximilianh idonaldson sb_journal_club kristen barwil EisenLab Motif Discovery
  • Common aging pathways in worms, flies, mice and humans
    J Exp Biol, Vol. 210, No. 9. (1 May 2007), pp. 1607-1612.
    by Stuart K Kim
    posted to no-tag by ana on 2007-11-20 01:58:51 as **
  • MORPH: Probabilistic Alignment Combined with Hidden Markov Models of cis-Regulatory Modules
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e216.
    by Saurabh Sinha, Xin He
    posted to no-tag by ana on 2007-11-20 01:58:32 as ** along with 7 people and 2 groups dpollard cjeans zwang maximilianh hpaces Ema uwe EisenLab cis-regulatory-evolution
  • The challenge of protein structure determination lessons from structural genomics
    Protein Sci, Vol. 16, No. 11. (1 November 2007), pp. 2472-2482.
    by Lukasz Slabinski, Lukasz Jaroszewski, Ana P Rodrigues, Leszek Rychlewski, Ian A Wilson, Scott A Lesley, Adam Godzik
    posted to jcsg structural_genomics target_selection by ana on 2007-11-05 18:39:24 as read along with 2 people jwm rph
  • Profile-based string kernels for remote homology detection and motif extraction.
    J Bioinform Comput Biol, Vol. 3, No. 3. (June 2005), pp. 527-550.
    by R Kuang, E Ie, K Wang, K Wang, M Siddiqi, Y Freund, C Leslie
    posted to new by ana on 2007-08-02 23:32:02 as ** along with 3 people and 2 groups barry chrn craigtalbert structural_bioinformatics Bioinformatics
  • Activity of a C. elegans GATA transcription factor, ELT-1, expressed in yeast.
    J Mol Biol, Vol. 253, No. 5. (10 November 1995), pp. 665-676.
    by YH Shim, JJ Bonner, T Blumenthal
    posted to new by ana on 2007-07-31 19:23:38 as ** along with 2 groups structural_bioinformatics Bioinformatics
  • The evolutionary duplication and probable demise of an endodermal GATA factor in Caenorhabditis elegans.
    Genetics, Vol. 165, No. 2. (October 2003), pp. 575-588.
    by T Fukushige, B Goszczynski, H Tian, JD McGhee
    posted to new by ana on 2007-07-31 19:22:05 as ** along with 2 groups structural_bioinformatics Bioinformatics
  • Vector analysis as a fast and easy method to compare gene expression responses between different experimental backgrounds
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by Rainer Breitling, Patrick Armengaud, Anna Amtmann
    posted to new by ana on 2007-07-23 04:33:08 as ** along with 1 person and 2 groups 0004573p structural_bioinformatics Bioinformatics
  • Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster.
    Proc Natl Acad Sci U S A (31 July 2006)
    by Celine Moorman, Ling V V Sun, Junbai Wang, Elzo de Wit, Wendy Talhout, Lucas D D Ward, Frauke Greil, Xiang-Jun J Lu, Kevin P P White, Harmen J J Bussemaker, Bas van Steensel
    posted to new by ana on 2007-07-17 03:27:57 as ** along with 4 people and 4 groups indigoviolet xwbcn johncumbers wrowell structural_bioinformatics Bioinformatics EisenLab Cline_lab
  • Combined experimental and computational approaches to study the regulatory elements in eukaryotic genes.
    Brief Bioinform (12 July 2007)
    by Nikolay A A Kolchanov, Tatyana I I Merkulova, Elena V V Ignatieva, Elena A A Ananko, Dmitry Yu Y Oshchepkov, Viktor G G Levitsky, Gennady V V Vasiliev, Nataly V V Klimova, Vasily M M Merkulov, T Charles C Hodgman
    posted to new by ana on 2007-07-16 21:26:56 as ** along with 3 people and 2 groups GustavoLacerda cabbagezs xili03 structural_bioinformatics Bioinformatics
  • The Evolution of Transcriptional Regulation in Eukaryotes
    Mol Biol Evol, Vol. 20, No. 9. (1 September 2003), pp. 1377-1419.
    by Gregory A Wray, Matthew W Hahn, Ehab Abouheif, James P Balhoff, Margaret Pizer, Matthew V Rockman, Laura A Romano
    posted to new by ana on 2007-07-16 21:25:14 as ** along with 7 people and 5 groups emptyhb dpollard adepace nickluscombe anatiferous mimulus_99 cisevol structural_bioinformatics Bioinformatics EisenLab EBI-regulation cis-regulatory-evolution
  • Orchestrated response: a symphony of transcription factors for gene control.
    Genes Dev, Vol. 14, No. 20. (15 October 2000), pp. 2551-2569.
    by B Lemon, R Tjian
    posted to new by ana on 2007-07-16 21:25:09 as ** along with 2 people and 3 groups nickluscombe lusk structural_bioinformatics Bioinformatics EBI-regulation
  • Analysis of computational approaches for motif discovery
    Algorithms for Molecular Biology, Vol. 1, No. 1. (19 May 2006), 8.
    by Nan Li, Martin Tompa
    posted to new by ana on 2007-07-07 19:41:31 as **** along with 9 people and 2 groups barry tuck chad_davis dquest lusk nklee maximilianh xi03 csdhwang structural_bioinformatics Bioinformatics
  • Genomic cis-regulatory architecture and trans-acting regulators of a single interneuron-specific gene battery in C. elegans.
    Dev Cell, Vol. 6, No. 6. (June 2004), pp. 757-770.
    by AS Wenick, O Hobert
    posted to new by ana on 2007-07-03 00:28:04 as *** along with 2 people and 2 groups maximilianh blobbybirdman structural_bioinformatics Bioinformatics
  • Predicting gene expression from sequence.
    Cell, Vol. 117, No. 2. (16 April 2004), pp. 185-198.
    by MA Beer, S Tavazoie
    posted to new by ana on 2007-07-03 00:00:13 as **** along with 8 people and 4 groups klo xwbcn adepace nickluscombe noano koller jrest phoenixzxl structural_bioinformatics Bioinformatics EisenLab EBI-regulation
  • FoxA1 binding to the MMTV LTR modulates chromatin structure and transcription.
    Exp Cell Res, Vol. 304, No. 2. (1 April 2005), pp. 593-603.
    by PH Holmqvist, S Belikov, KS Zaret, O Wrange
    posted to new by ana on 2007-07-02 23:36:40 as ** along with 2 groups structural_bioinformatics Bioinformatics
  • Genome-scale analysis of in vivo spatiotemporal promoter activity in Caenorhabditis elegans
    Nature Biotechnology, Vol. 25, No. 6. (07 May 2007), pp. 663-668.
    by Denis Dupuy, Nicolas Bertin, César A Hidalgo, Kavitha Venkatesan, Domena Tu, David Lee, Jennifer Rosenberg, Nenad Svrzikapa, Aurélie Blanc, Alain Carnec, Anne-Ruxandra Carvunis, Rock Pulak, Jane Shingles, John Reece-Hoyes, Rebecca Hunt-Newbury, Ryan Viveiros, William A Mohler, Murat Tasan, Frederick P Roth, Christian Le Peuch, Ian A Hope, Robert Johnsen, Donald G Moerman, Albert-László Barabási, David Baillie, Marc Vidal
    posted to new by ana on 2007-07-02 23:33:08 as *** along with 2 people and 3 groups Doug brant structural_bioinformatics Bioinformatics EisenLab
  • A developmental timing microRNA and its target regulate life span in C. elegans.
    Science, Vol. 310, No. 5756. (23 December 2005), pp. 1954-1957.
    by M Boehm, F Slack
    posted to new by ana on 2007-07-02 23:32:46 as *** along with 2 people and 2 groups eckart_bindewald tardigrade structural_bioinformatics Bioinformatics
  • Comparative genomics of nematodes.
    Trends Genet, Vol. 21, No. 10. (October 2005), pp. 573-581.
    by M Mitreva, ML Blaxter, DM Bird, JP McCarter
    posted to new by ana on 2007-07-02 23:09:12 as ** along with 2 groups structural_bioinformatics Bioinformatics
  • Regulation of Organogenesis by the Caenorhabditis elegans FoxA Protein PHA-4
    Science, Vol. 295, No. 5556. (1 February 2002), pp. 821-825.
    by J Gaudet, SE Mango
    posted to new by ana on 2007-06-25 20:28:47 as **** along with 4 people and 3 groups Auger tardigrade postrational maximilianh Dead 60's structural_bioinformatics Bioinformatics
  • Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 787-797.
    by Zhengdong D Zhang, Alberto Paccanaro, Yutao Fu, Sherman Weissman, Zhiping Weng, Joseph Chang, Michael Snyder, Mark B Gerstein
    posted to new by ana on 2007-06-14 18:55:20 as *** along with 7 people and 4 groups inesdesantiago jasonflannick Borelli kengg ghattem epigenetics blobbybirdman structural_bioinformatics Bioinformatics Plantandetc UH - Computational Biology
  • A global analysis of Caenorhabditis elegans operons
    Nature, Vol. 417, No. 6891. (20 June 2002), pp. 851-854.
    by Thomas Blumenthal, Donald Evans, Christopher D Link, Alessandro Guffanti, Daniel Lawson, Jean Thierry-Mieg, Danielle Thierry-Mieg, Wei L Chiu, Kyle Duke, Moni Kiraly, Stuart K Kim
    posted to new by ana on 2007-06-12 23:44:04 as ** along with 2 groups structural_bioinformatics Bioinformatics
  • Genome organization: Teamed up for transcription
    Nature, Vol. 417, No. 6891. (20 June 2002), pp. 797-798.
    by Christian von Mering, Peer Bork
    posted to new by ana on 2007-06-12 23:41:46 as ** along with 2 groups structural_bioinformatics Bioinformatics
  • Insulin/IGF Signaling and HNF-3/forkhead Proteins
    Science, Vol. 279, No. 5352. (6 February 1998), 783e.
    by Terry G Unterman;, Kui Lin, Cynthia Kenyon
    posted to new by ana on 2007-06-09 03:28:06 as **** along with 2 groups structural_bioinformatics Bioinformatics
  • daf-16: An HNF-3/forkhead family member that can function to double the life-span of Caenorhabditis elegans.
    Science, Vol. 278, No. 5341. (14 November 1997), pp. 1319-1322.
    by K Lin, JB Dorman, A Rodan, C Kenyon
    posted to new by ana on 2007-06-09 03:22:09 as **** along with 2 groups structural_bioinformatics Bioinformatics
  • Transcription factors: structural families and principles of DNA recognition.
    Annu Rev Biochem, Vol. 61 (1992), pp. 1053-1095.
    by CO Pabo, RT Sauer
    posted to new by ana on 2007-06-08 02:56:43 as ** along with 3 people and 2 groups barry medic0747 uz_labu_laimi structural_bioinformatics Bioinformatics
  • Co-crystal structure of the HNF-3/fork head DNA-recognition motif resembles histone H5.
    Nature, Vol. 364, No. 6436. (29 July 1993), pp. 412-420.
    by KL Clark, ED Halay, E Lai, SK Burley
    posted to new by ana on 2007-06-08 02:55:14 as ** along with 2 groups structural_bioinformatics Bioinformatics
  • The fork head domain: a novel DNA binding motif of eukaryotic transcription factors?
    Cell, Vol. 63, No. 3. (2 November 1990), pp. 455-456.
    by D Weigel, H Jäckle
    posted to new by ana on 2007-06-08 02:53:31 as ** along with 1 person and 2 groups jayster4 structural_bioinformatics Bioinformatics
  • An evolutionary framework for the study of developmental evolution in a set of nematodes related to Caenorhabditis elegans.
    Mol Phylogenet Evol, Vol. 8, No. 2. (October 1997), pp. 249-259.
    by JG Baldwin, LM Frisse, JT Vida, CD Eddleman, WK Thomas
    posted to new by ana on 2007-06-06 01:19:54 as ** along with 2 groups structural_bioinformatics Bioinformatics
  • A molecular evolutionary framework for the phylum Nematoda
    Nature, Vol. 392, No. 6671. (5 March 1998), pp. 71-75.
    by Mark L Blaxter, Paul De Ley, James R Garey, Leo X Liu, Patsy Scheldeman, Andy Vierstraete, Jacques R Vanfleteren, Laura Y Mackey, Mark Dorris, Linda M Frisse, JT Vida, Kelley W Thomas
    posted to new by ana on 2007-06-06 01:16:45 as ** along with 2 groups structural_bioinformatics Bioinformatics
  • Caenorhabditis elegans is a nematode.
    Science, Vol. 282, No. 5396. (11 December 1998), pp. 2041-2046.
    by M Blaxter
    posted to new by ana on 2007-06-06 01:14:35 as ** along with 1 person and 2 groups tardigrade structural_bioinformatics Bioinformatics
  • Conservation, Regulation, Synteny, and Introns in a Large-scale C. briggsae-C. elegans Genomic Alignment
    Genome Res., Vol. 10, No. 8. (1 August 2000), pp. 1115-1125.
    by James W Kent, Alan M Zahler
    posted to new by ana on 2007-06-06 01:08:06 as *** along with 1 person and 2 groups wenhan structural_bioinformatics Bioinformatics
  • From the Cover: Building a dictionary for genomes: Identification of presumptive regulatory sites by statistical analysis
    PNAS, Vol. 97, No. 18. (29 August 2000), pp. 10096-10100.
    by Harmen J Bussemaker, Hao Li, Eric D Siggia
    posted to new by ana on 2007-06-05 01:42:47 as **** along with 3 people and 2 groups ep161302 dquest johncumbers structural_bioinformatics Bioinformatics
  • Identification of the differential distribution patterns of mRNAs and consensus binding sequences for mouse DAF-16 homologues.
    Biochem J, Vol. 349, No. Pt 2. (15 July 2000), pp. 629-634.
    by T Furuyama, T Nakazawa, I Nakano, N Mori
    posted to new by ana on 2007-06-05 00:29:41 as **** along with 1 person and 2 groups johncumbers structural_bioinformatics Bioinformatics
  • DAF-16 target genes that control C. elegans life-span and metabolism.
    Science, Vol. 300, No. 5619. (25 April 2003), pp. 644-647.
    by SS Lee, S Kennedy, AC Tolonen, G Ruvkun
    posted to new by ana on 2007-06-05 00:22:35 as ** along with 1 person and 2 groups johncumbers structural_bioinformatics Bioinformatics
  • Transcriptional outputs of the Caenorhabditis elegans forkhead protein DAF-16
    Aging Cell, Vol. 2, No. 2. (2003), pp. 111-121.
    by Joshua Mcelwee, Kerry Bubb, James H Thomas
    posted to new by ana on 2007-06-05 00:20:05 as ** along with 1 person and 2 groups tardigrade structural_bioinformatics Bioinformatics
  • SMK-1, an Essential Regulator of DAF-16-Mediated Longevity
    Cell, Vol. 124, No. 5. (10 March 2006), pp. 1039-1053.
    by Suzanne Wolff, Hui Ma, Denise Burch, Gustavo A Maciel, Tony Hunter, Andrew Dillin
    posted to new by ana on 2007-06-05 00:16:05 as ** along with 2 groups structural_bioinformatics Bioinformatics
  • Opposing activities protect against age-onset proteotoxicity.
    Science, Vol. 313, No. 5793. (15 September 2006), pp. 1604-1610.
    by E Cohen, J Bieschke, RM Perciavalle, JW Kelly, A Dillin
    posted to abeta1-42 aging alzheimers daf-16 daf-2 hsf-1 promoter by ana on 2007-06-04 03:30:00 as ***** along with 2 groups structural_bioinformatics Bioinformatics
  • PhyloGibbs: A Gibbs Sampling Motif Finder That Incorporates Phylogeny.
    PLoS Comput Biol, Vol. 1, No. 7. (December 2005)
    by R Siddharthan, ED Siggia, E van Nimwegen
    posted to new by ana on 2007-06-02 04:04:46 as ***** along with 11 people and 3 groups isimpson postrational dquest AaronDarling nickluscombe noano adsmitty lusk lilou idonaldson yevishere structural_bioinformatics Bioinformatics EBI-regulation
  • Applied bioinformatics for the identification of regulatory elements.
    Nat Rev Genet, Vol. 5, No. 4. (April 2004), pp. 276-287.
    by WW Wasserman, A Sandelin
    posted to new by ana on 2007-06-02 04:03:24 as ***** along with 15 people and 8 groups mariakmejia icases chad_davis moborg gpalidwor dchughes nickluscombe johncumbers giovanni xiaobeizhao bertelsen Stew nklee jdiezperezj ArtemPankin structural_bioinformatics Bioinformatics EisenLab G4ID EBI-regulation GeschwindLab TNT Genetics-of-Gambling
  • Structural Evolution of the Protein Kinase-Like Superfamily.
    PLoS Comput Biol, Vol. 1, No. 5. (21 October 2005)
    by Eric D D Scheeff, Philip E E Bourne
    posted to jcsg phylogenetics protein_sequence protein_structure by ana on 2007-06-02 03:59:29 as **** along with 3 people and 2 groups renatomilani BragilMassoud anwazo structural_bioinformatics Bioinformatics
  • Divergent Evolution Within Protein Superfolds Inferred from Profile-based Phylogenetics
    Journal of Molecular Biology, Vol. 354, No. 3. (2 December 2005), pp. 722-737.
    by Douglas L Theobald, Deborah S Wuttke
    posted to jcsg phylogenetics protein_sequence protein_structure by ana on 2007-06-02 03:54:22 as **** along with 3 people and 4 groups barry dlr caporaso McCammon structural_bioinformatics Bioinformatics biomedical-nlp
  • Practical Strategies for Discovering Regulatory DNA Sequence Motifs
    PLoS Computational Biology, Vol. 2, No. 4. (1 April 2006), e36.
    by Kenzie D Macisaac, Ernest Fraenkel
    posted to new by ana on 2007-06-02 03:05:13 as ***** along with 6 people and 2 groups kristallreiner chad_davis balicea hggr GustavoLacerda svdate structural_bioinformatics Bioinformatics
  • Genes that act downstream of DAF-16 to influence the lifespan of Caenorhabditis elegans
    Nature, Vol. 424, No. 6946. (17 July 2003), pp. 277-283.
    by Coleen T Murphy, Steven A Mccarroll, Cornelia I Bargmann, Andrew Fraser, Ravi S Kamath, Julie Ahringer, Hao Li, Cynthia Kenyon
    posted to new by ana on 2007-06-02 03:04:32 as ***** along with 1 person and 2 groups johncumbers structural_bioinformatics Bioinformatics
  • SISYPHUS--structural alignments for proteins with non-trivial relationships.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by A Andreeva, A Prlić, TJ Hubbard, AG Murzin
    posted to protein_structure structure_classification structure_comparison by ana on 2007-05-29 23:18:59 as ***** along with 4 people and 2 groups barry dgront massivemayhem martainn structural_bioinformatics Bioinformatics
  • Protein families and TRIBES in genome sequence space.
    Nucleic Acids Res, Vol. 31, No. 15. (1 August 2003), pp. 4632-4638.
    by AJ Enright, V Kunin, CA Ouzounis
    posted to family-size jcsg by ana on 2007-05-22 01:51:20 as ** along with 1 person and 2 groups tmmurali structural_bioinformatics Bioinformatics
  • Scaling law in sizes of protein sequence families: from super-families to orphan genes.
    Proteins, Vol. 51, No. 4. (1 June 2003), pp. 569-576.
    by R Unger, S Uliel, S Havlin
    posted to family-size jcsg by ana on 2007-05-22 01:26:14 as read along with 2 groups structural_bioinformatics Bioinformatics
  • Assessing computational tools for the discovery of transcription factor binding sites
    Nature Biotechnology, Vol. 23, No. 1. (06 January 2005), pp. 137-144.
    by Martin Tompa, Nan Li, Timothy L Bailey, George M Church, Bart D De Moor, Eleazar Eskin, Alexander V Favorov, Martin C Frith, Yutao Fu, James J Kent, Vsevolod J Makeev, Andrei A Mironov, William S Noble, Giulio Pavesi, Graziano Pesole, Mireille Régnier, Nicolas Simonis, Saurabh Sinha, Gert Thijs, Jacques v van Helden, Mathias Vandenbogaert, Zhiping Weng, Christopher Workman, Chun Ye, Zhou Zhu
    posted to promoter_finding transcription_factor by ana on 2007-05-22 01:12:46 as ***** along with 23 people and 6 groups nuin ep161302 icases barry aalibes aprasad jfr tuck chad_davis lyongu tabu dquest neveaire ranb johncumbers noano xiaobeizhao olympos GustavoLacerda nklee mdimon dandaman vietanh0 structural_bioinformatics Biostatistics Computational-Genomics Bioinformatics Neuroscience TNT
  • Comparative genomics in C. elegans, C. briggsae, and other Caenorhabditis species.
    Methods Mol Biol, Vol. 351 (2006), pp. 13-29.
    by A Coghlan, JE Stajich, TW Harris
    posted to celegans comparative_genomics by ana on 2007-05-22 00:47:14 as **** along with 2 groups structural_bioinformatics Bioinformatics
  • The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics
    PLoS Biology, Vol. 1, No. 2. (1 November 2003), e45.
    by Lincoln D Stein, Zhirong Bao, Darin Blasiar, Thomas Blumenthal, Michael R Brent, Nansheng Chen, Asif Chinwalla, Laura Clarke, Chris Clee, Avril Coghlan, Alan Coulson, Peter D'eustachio, David H Fitch, Lucinda A Fulton, Robert E Fulton, Sam Griffiths-Jones, Todd W Harris, Ladeana W Hillier, Ravi Kamath, Patricia E Kuwabara, Elaine R Mardis, Marco A Marra, Tracie L Miner, Patrick Minx, James C Mullikin, Robert W Plumb, Jane Rogers, Jacqueline E Schein, Marc Sohrmann, John Spieth, Jason E Stajich, Chaochun Wei, David Willey, Richard K Wilson, Richard Durbin, Robert H Waterston
    posted to celegans comparative_genomics by ana on 2007-05-22 00:46:54 as **** along with 1 person and 3 groups indigoviolet structural_bioinformatics Bioinformatics EisenLab
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