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aconesa library [51 articles]

最近 aconesa ordered by to_read.
  • International genome project launched
    Nature News
    by Erika C Hayden
    posted to genome human snps by aconesa on 2008-01-23 07:18:16 as ****
  • High-confidence prediction of global interactomes based on genome-wide coevolutionary networks
    Proceedings of the National Academy of Sciences (16 January 2008), 0709671105.
    by David Juan, Florencio Pazos, Alfonso Valencia
    posted to interactome network by aconesa on 2008-01-17 07:51:09 as **** along with 13 people and 1 group marti tmmurali brant balicea sebastien_vigneau bluto cjeans Katje roys friendpine huali mdstobbe paolomarcatili microbiology_nijmegen
  • Bio-ontologies: current trends and future directions.
    Brief Bioinform, Vol. 7, No. 3. (September 2006), pp. 256-274.
    by O Bodenreider, R Stevens
    posted to ontologies by aconesa on 2007-04-19 09:50:19 as **** along with 7 people and 1 group yas dullhunk ebrahim_bagheri sgoetz BIBLIOma alanrw dansullivanblk T_lab
  • notes Reconstruction of genetic association networks from microarray data: A partial least squares approach.
    Bioinformatics (18 January 2008)
    by Vasyl Pihur, Somnath Datta, Susmita Datta
    posted to network by aconesa on 2008-04-02 08:01:28 as *** along with 6 people jyuh cannin jfr shigepong sotacam winterschlaefer
  • Genome-wide transcriptional analysis of the human cell cycle identifies genes differentially regulated in normal and cancer cells
    Proceedings of the National Academy of Sciences (14 January 2008), 0704723105.
    by Ziv Bar-Joseph, Zahava Siegfried, Michael Brandeis, Benedikt Brors, Yong Lu, Roland Eils, Brian D Dynlacht, Itamar Simon
    posted to cell cycle series time by aconesa on 2008-01-17 08:02:24 as *** along with 5 people jyuh cjeans renatomilani mclarenv gracio
  • Gene Set Enrichment Analysis using Linear Models and Diagnostics
    Bioinformatics (11 September 2008), btn465.
    by Assaf P Oron, Zhen Jiang, Robert Gentleman
    posted to no-tag by aconesa on 2008-09-17 08:03:50 as **
  • OmicsViz: Cytoscape plug-in for visualizing Omics data across species.
    Bioinformatics (Oxford, England) (8 September 2008)
    by Tian Xia, Julie A A Dickerson
    posted to no-tag by aconesa on 2008-09-17 07:31:43 as ** along with 1 person sjcockell
  • Poly A- transcripts expressed in HeLa cells.
    PLoS ONE, Vol. 3, No. 7. (2008)
    by Q Wu, YC Kim, J Lu, Z Xuan, J Chen, Y Zheng, T Zhou, MQ Zhang, CI Wu, SM Wang
    posted to no-tag by aconesa on 2008-09-01 14:04:41 as **
  • A semiparametric test to detect associations between quantitative traits and candidate genes in structured populations
    Bioinformatics (27 August 2008), btn455.
    by Meijuan Li, Cavan Reilly, Timothy Hanson
    posted to no-tag by aconesa on 2008-09-01 07:25:35 as ** along with 1 person GeeSharpMinor
  • PathCase: Pathways Database System
    Bioinformatics (26 August 2008), btn459.
    by B Elliott, M Kirac, A Cakmak, G Yavas, S Mayes, E Cheng, Y Wang, C Gupta, G Ozsoyoglu, ZM Ozsoyoglu
    posted to no-tag by aconesa on 2008-09-01 07:23:23 as ** along with 3 people jyuh renatomilani thomaskelder
  • GOfetcher: A Database with Complex Searching Facility for Gene Ontology
    Bioinformatics (26 August 2008), btn441.
    by Mehdi Pirooznia, Tanwir Habib, Edward J Perkins, Youping Deng
    posted to no-tag by aconesa on 2008-09-01 07:21:56 as ** along with 3 people ientb jyuh dullhunk
  • Supervised Principal Component Analysis for Gene Set Enrichment of Microarray Data with Continuous or Survival Outcomes
    Bioinformatics (27 August 2008), btn458.
    by Xi Chen, Lily Wang, Jonathan D Smith, Bing Zhang
    posted to no-tag by aconesa on 2008-09-01 07:20:32 as ** along with 1 person paszkows
  • High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi
    Nature Genetics, Vol. 40, No. 8. (27 July 2008), pp. 987-993.
    by Kathryn E Holt, Julian Parkhill, Camila J Mazzoni, Philippe Roumagnac, François-Xavier Weill, Ian Goodhead, Richard Rance, Stephen Baker, Duncan J Maskell, John Wain, Christiane Dolecek, Mark Achtman, Gordon Dougan
    posted to no-tag by aconesa on 2008-08-28 09:53:16 as ** along with 1 person Stew
  • Principal components analysis based methodology to identify differentially expressed genes in time-course microarray data
    BMC Bioinformatics, Vol. 9 (06 June 2008), 267.
    by Sudhakar Jonnalagadda, Rajagopalan Srinivasan
    posted to no-tag by aconesa on 2008-08-28 09:25:49 as ** along with 3 people ddunbar jfr klo
  • Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology
    Nucl. Acids Res. (27 August 2008), gkn502.
    by Richard Cronn, Aaron Liston, Matthew Parks, David S Gernandt, Rongkun Shen, Todd Mockler
    posted to no-tag by aconesa on 2008-08-28 09:07:27 as ** along with 1 person brant
  • Multiway real-time PCR gene expression profiling in yeast Saccharomyces cerevisiae reveals altered transcriptional response of ADH-genes to glucose stimuli
    BMC Genomics, Vol. 9 (16 April 2008), 170.
    by Anders Stahlberg, Karin Elbing, Jose Andrade-Garda, Bjorn Sjogreen, Amin Forootan, Mikael Kubista
    posted to no-tag by aconesa on 2008-07-31 07:49:21 as **
  • Integrating biological data - the Distributed Annotation System
    BMC Bioinformatics, Vol. 9, No. Suppl 8. (2008)
    by Andrew Jenkinson, Mario Albrecht, Ewan Birney, Hagen Blankenburg, Thomas Down, Robert Finn, Henning Hermjakob, Tim Hubbard, Rafael Jimenez, Philip Jones, Andreas Kahari, Eugene Kulesha, Jose Macias, Gabrielle Reeves, Andreas Prlic
    posted to data integration by aconesa on 2008-07-31 07:44:45 as ** along with 3 people jfr jyuh djkt
  • Tissue-specific splicing factor gene expression signatures
    Nucl. Acids Res. (24 July 2008), gkn463.
    by Ana R Grosso, Anita Q Gomes, Nuno L Barbosa-Morais, Sandra Caldeira, Natalie P Thorne, Godfrey Grech, Marieke von Lindern, Maria Carmo-Fonseca
    posted to no-tag by aconesa on 2008-07-25 10:36:59 as ** along with 2 people jfr cajunsushi
  • Trans-natural antisense transcripts including noncoding RNAs in 10 species: implications for expression regulation
    Nucl. Acids Res. (24 July 2008), gkn470.
    by Jiong-Tang Li, Yong Zhang, Lei Kong, Qing-Rong Liu, Liping Wei
    posted to transcriptomics by aconesa on 2008-07-25 10:32:15 as ** along with 2 people GustavoLacerda icq242500260
  • A critical assessment of Mus musculus gene function prediction using integrated genomic evidence
    Genome Biology, Vol. 9, No. Suppl 1. (2008)
    by Lourdes P Castillo, Murat Tasan, Chad Myers, Hyunju Lee, Trupti Joshi, Chao Zhang, Yuanfang Guan, Michele Leone, Andrea Pagnani, Wan Kim, Chase Krumpelman, Weidong Tian, Guillaume Obozinski, Yanjun Qi, Sara Mostafavi, Guan Lin, Gabriel Berriz, Francis Gibbons, Gert Lanckriet, Jian Qiu, Charles Grant, Zafer Barutcuoglu, David Hill, David W Farley, Chris Grouios, Debajyoti Ray, Judith Blake, Minghua Deng, Michael Jordan, William Noble, Quaid Morris, Judith K Seetharaman, Ziv B Joseph, Ting Chen, Fengzhu Sun, Olga Troyanskaya, Edward Marcotte, Dong Xu, Timothy Hughes, Frederick Roth
    posted to function prediction transcriptomics by aconesa on 2008-07-24 07:29:46 as ** along with 1 person jyuh
  • Mapping and quantifying mammalian transcriptomes by RNA-Seq
    Nature methods, Vol. 30 May 2008; | doi:10.1038/nmeth.1226
    by Ali
    posted to transcriptomics by aconesa on 2008-06-06 08:19:02 as **
  • Stem cell transcriptome profiling via massive-scale mRNA sequencing
    Nature methods, Vol. 30 May 2008; | doi:10.1038/nmeth.1223
    by Nicole
    posted to solid transcriptomics by aconesa on 2008-06-06 08:12:26 as ** along with 1 person jyuh
  • Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research.
    Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3674-3676.
    by A Conesa, S Götz, JM García-Gómez, J Terol, M Talón, M Robles
    posted to blast2go by aconesa on 2008-05-15 16:32:53 as ** along with 4 people Garamonfok sgoetz talponer imelda
  • Adaptation of the MapMan ontology to biotic stress responses: application in solanaceous species
    Plant Methods, Vol. 3 (04 September 2007), 10.
    by Ana Rotter, Bjorn Usadel, Spela Baebler, Mark Stitt, Kristina Gruden
    posted to annotation data-mining mapman by aconesa on 2008-05-15 16:29:49 as **
  • PageMan: An interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments
    BMC Bioinformatics, Vol. 7 (18 December 2006), 535.
    by Bjorn Usadel, Axel Nagel, Dirk Steinhauser, Yves Gibon, Oliver E Blasing, Henning Redestig, Nese Sreenivasulu, Leonard Krall, Matthew A Hannah, Fabien Poree, Alisdair R Fernie, Mark Stitt
    posted to annotation data-mining mapman by aconesa on 2008-05-15 16:27:48 as ** along with 2 people jyuh jfr
  • Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of corresponding genes, and comparison with known responses.
    Plant Physiol, Vol. 138, No. 3. (July 2005), pp. 1195-1204.
    by B Usadel, A Nagel, O Thimm, H Redestig, OE Blaesing, N Palacios-Rojas, J Selbig, J Hannemann, MC Piques, D Steinhauser, WR Scheible, Y Gibon, R Morcuende, D Weicht, S Meyer, M Stitt
    posted to annotation data-mining mapman by aconesa on 2008-05-15 16:27:21 as ** along with 1 person LeightonP
  • Extending MapMan: application to legume genome arrays
    Bioinformatics, Vol. 22, No. 23. (1 December 2006), pp. 2958-2959.
    by Goffard, Nicolas, Weiller, Georg
    posted to annotation data-mining mapman ontologies by aconesa on 2008-05-15 16:19:43 as **
  • The art and practice of systems biology in medicine: mapping patterns of relationships.
    J Proteome Res, Vol. 6, No. 4. (April 2007), pp. 1540-1559.
    by J van der Greef, S Martin, P Juhasz, A Adourian, T Plasterer, ER Verheij, RN McBurney
    posted to multivariate network by aconesa on 2008-05-12 10:07:35 as ** along with 1 person jyuh
  • Identifying the future needs for long-term USDA efforts in agricultural animal genomics.
    Int J Biol Sci, Vol. 3, No. 3. (2007), pp. 185-191.
    by RD Green, MA Qureshi, JA Long, PJ Burfening, DL Hamernik
    posted to no-tag by aconesa on 2008-05-12 10:00:03 as ** along with 1 person wenhan
  • MetaNetwork: a computational protocol for the genetic study of metabolic networks.
    Nat Protoc, Vol. 2, No. 3. (2007), pp. 685-694.
    by J Fu, MA Swertz, JJ Keurentjes, RC Jansen
    posted to multivariate network omics by aconesa on 2008-05-12 09:58:37 as ** along with 1 person jyuh
  • Correlation network analysis for data integration and biomarker selection.
    Molecular bioSystems, Vol. 4, No. 3. (March 2008), pp. 249-259.
    by A Adourian, E Jennings, R Balasubramanian, WM Hines, D Damian, TN Plasterer, CB Clish, P Stroobant, R McBurney, ER Verheij, I Bobeldijk, J van der Greef, J Lindberg, K Kenne, U Andersson, H Hellmold, K Nilsson, H Salter, I Schuppe-Koistinen
    posted to multivariate network omics by aconesa on 2008-05-12 09:56:03 as ** along with 1 person jyuh
  • Systematic interpretation of microarray data using experiment annotations
    BMC Genomics, Vol. 7 (20 December 2006), 319.
    by Kurt Fellenberg, Christian H Busold, Olaf Witt, Andrea Bauer, Boris Beckmann, Nicole C Hauser, Marcus Frohme, Stefan Winter, Jurgen Dippon, Jorg D Hoheisel
    posted to ontologies by aconesa on 2008-04-29 18:19:22 as ** along with 1 person jfr
  • Genome-wide association studies for complex traits: consensus, uncertainty and challenges
    Nature Reviews Genetics, Vol. 9, No. 5., pp. 356-369.
    by Mark I Mccarthy, Gonçalo R Abecasis, Lon R Cardon, David B Goldstein, Julian Little, John PA Ioannidis, Joel N Hirschhorn
    posted to association study by aconesa on 2008-04-29 16:03:31 as ** along with 7 people psique jyuh xingxu vplagnol echinotrix ptrobajo srp33
  • Protein interactions in human genetic diseases
    Genome Biology, Vol. 9, No. 1. (2008)
    by Benjamin S Bockler, Alex Bateman
    posted to interactome by aconesa on 2008-04-11 07:55:27 as ** along with 10 people and 2 groups barry balicea frohike neils grahamc biomcgary barriot mingzhi mclarenv jyuh Bioinformatics McCammon
  • Post hoc pattern matching: assigning significance to statistically defined expression patterns in single channel microarray data
    BMC Bioinformatics, Vol. 8 (05 July 2007), 240.
    by Randall Hulshizer, Eric M Blalock
    posted to data mining by aconesa on 2008-04-11 07:50:50 as ** along with 2 people jfr GeeSharpMinor
  • Germ-line mutations, DNA damage, and global hypermethylation in mice exposed to particulate air pollution in an urban/industrial location
    Proceedings of the National Academy of Sciences (14 January 2008), 0705896105.
    by Carole Yauk, Aris Polyzos, Andrea Rowan-Carroll, Christopher M Somers, Roger W Godschalk, Frederik J Schooten, Lynn M Berndt, Igor P Pogribny, Igor Koturbash, Andrew Williams, George R Douglas, Olga Kovalchuk
    posted to damage dna methylation by aconesa on 2008-01-17 08:11:12 as ** along with 3 people and 1 group Lini misonneh epigenetics Roswell Cancer Crosstalk
  • Ultrafast DNA sequencing on a microchip by a hybrid separation mechanism that gives 600 bases in 6.5 minutes
    Proceedings of the National Academy of Sciences, Vol. 105, No. 2. (15 January 2008), pp. 476-481.
    by Christopher P Fredlake, Daniel G Hert, Cheuk-Wai Kan, Thomas N Chiesl, Brian E Root, Ryan E Forster, Annelise E Barron
    posted to sequencing by aconesa on 2008-01-17 08:06:54 as ** along with 2 people jyuh dchughes
  • Atherosclerosis and liver inflammation induced by increased dietary cholesterol intake: a combined transcriptomics and metabolomics analysis
    Genome Biology, Vol. 8, No. 9. (2007)
    by Robert Kleemann, Lars Verschuren, Marjan van Erk, Yuri Nikolsky, Nicole Cnubben, Elwin Verheij, Age Smilde, Henk Hendriks, Susanne Zadelaar, Graham Smith, Valery Kaznacheev, Tatiana Nikolskaya, Anton Melnikov, Eva H Camejo, Jan van der Greef, Ben van Ommen, Teake Kooistra
    posted to omics by aconesa on 2007-11-20 09:02:48 as ** along with 2 people and 1 group vinithepooh shikin GeneGo
  • Using ontologies to describe mouse phenotypes.
    Genome Biol, Vol. 6, No. 1. (2005)
    by GV Gkoutos, EC Green, AM Mallon, JM Hancock, D Davidson
    posted to ontologies by aconesa on 2007-04-26 09:11:21 as ** along with 2 people fisherp sgoetz
  • Phenogo: assigning phenotypic context to gene ontology annotations with natural language processing.
    Pac Symp Biocomput (2006), pp. 64-75.
    by Y Lussier, T Borlawsky, D Rappaport, Y Liu, C Friedman
    posted to ontologies by aconesa on 2007-04-20 14:52:42 as ** along with 3 people and 1 group fisherp helliontroy sgoetz biomedical-nlp
  • The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information.
    Genome Biol, Vol. 6, No. 1. (2005)
    by CL Smith, CA Goldsmith, JT Eppig
    posted to ontologies by aconesa on 2007-04-20 14:30:22 as ** along with 3 people jandot leechuck sgoetz
  • A graph-theoretic approach to testing associations between disparate sources of functional genomics data.
    Bioinformatics, Vol. 20, No. 18. (12 December 2004), pp. 3353-3362.
    by R Balasubramanian, T LaFramboise, D Scholtens, R Gentleman
    posted to grafos by aconesa on 2007-04-19 10:03:08 as ** along with 1 person and 1 group lfriedl kdl
  • CRAVE: a database, middleware and visualization system for phenotype ontologies.
    Bioinformatics, Vol. 21, No. 7. (1 April 2005), pp. 1257-1262.
    by GV Gkoutos, EC Green, S Greenaway, A Blake, AM Mallon, JM Hancock
    posted to ontologies by aconesa on 2007-04-19 10:01:56 as ** along with 1 person sgoetz
  • A multivariate approach for integrating genome-wide expression data and biological knowledge
    Bioinformatics, Vol. 22, No. 19. (1 October 2006), pp. 2373-2380.
    by Sek W Kong, William T Pu, Peter J Park
    posted to multivariate by aconesa on 2007-04-19 09:51:27 as ** along with 2 people and 1 group jfr ealloza BioinfoCIPF
  • The mouse genome database (MGD): new features facilitating a model system.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by JT Eppig, JA Blake, CJ Bult, JA Kadin, JE Richardson,
    posted to ontologies by aconesa on 2007-04-19 09:42:49 as ** along with 2 people jeremymiller jyuh
  • The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant.
    Plant Physiol, Vol. 143, No. 2. (February 2007), pp. 587-599.
    by K Ilic, EA Kellogg, P Jaiswal, F Zapata, PF Stevens, LP Vincent, S Avraham, L Reiser, A Pujar, MM Sachs, NT Whitman, SR McCouch, ML Schaeffer, DH Ware, LD Stein, SY Rhee
    posted to ontologies by aconesa on 2007-04-19 09:41:09 as ** along with 1 person natstreet
  • The Rat Genome Database, update 2007--easing the path from disease to data and back again.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by SN Twigger, M Shimoyama, S Bromberg, AE Kwitek, HJ Jacob,
    posted to ontologies by aconesa on 2007-04-19 09:40:13 as ** along with 3 people leechuck jyuh sgoetz
  • A majority of cotton genes are expressed in single-celled fiber
    Planta, Vol. 227, No. 2. (3 January 2008), pp. 319-329.
    by Ran Hovav, Joshua Udall, Einat Hovav, Ryan Rapp, Lex Flagel, Jonathan Wendel
    posted to blast2go by aconesa on 2008-04-03 21:44:02 as *
  • Whole-genome analysis reveals molecular innovations and evolutionary transitions in chromalveolate species.
    Proc Natl Acad Sci U S A (25 February 2008)
    by Cindy Martens, Klaas Vandepoele, Yves Van de Peer
    posted to blast2go by aconesa on 2008-04-03 21:42:06 as * along with 2 people and 2 groups vaulot cmzmasek Microbial-Ecology Papers recommended by the Roscoff Plankton Group
  • Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
    Nat Genet, Vol. 25, No. 1. (May 2000), pp. 25-29.
    by M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
    posted to ontologies by aconesa on 2007-04-26 08:50:03 as * along with 37 people and 7 groups verdicchio raistrick vertikalist aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck sgoetz javamint bootsy PunkRock natstreet naegele CitoJam pablomendes carlk marck dgront roys rvosa fongenae BTS-PT-AS-CS kdl Bioinformatics EisenLab T_lab biomedical-nlp FAB-lab
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