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Retchless library [74 articles]

最近 Retchless さんのライブラリ .
  • Survival of the sparsest: robust gene networks are parsimonious
    Mol Syst Biol, Vol. 4 (2008)
    by Robert D Leclerc
    posted to no-tag by Retchless on 2008-08-07 22:07:33 as ** along with 6 people sg45653 Borelli bootsy maralena bpcusack reyez
  • Parasites lead to evolution of robustness against gene loss in host signaling networks
    Mol Syst Biol, Vol. 4 (15 July 2008)
    by Marcel Salathe, Orkun S Soyer
    posted to no-tag by Retchless on 2008-08-07 22:06:20 as ** along with 5 people beete grahamc zwang jjray renatomilani
  • On the nature of fur evolution: a phylogenetic approach in Actinobacteria
    BMC Evolutionary Biology, Vol. 8 (25 June 2008), 185.
    by Catarina L Santos, Joao Vieira, Fernando Tavares, David R Benson, Louis S Tisa, Alison M Berry, Pedro Moradas-Ferreira, Philippe Normand
    posted to no-tag by Retchless on 2008-07-24 21:14:58 as ** along with 1 person fhsantanna
  • Modularity of stress response evolution
    Proceedings of the National Academy of Sciences, Vol. 105, No. 21. (27 May 2008), pp. 7500-7505.
    by Amoolya H Singh, Denise M Wolf, Peggy Wang, Adam P Arkin
    posted to no-tag by Retchless on 2008-06-02 16:48:57 as ** along with 1 person deanmalmgren
  • PLoS Computational Biology: Dynamic Analysis of Integrated Signaling, Metabolic, and Regulatory Networks
    posted to no-tag by Retchless on 2008-05-26 16:28:45 as **
  • The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing
    Science (1 May 2008), 1158441.
    by Ugrappa Nagalakshmi, Zhong Wang, Karl Waern, Chong Shou, Debasish Raha, Mark Gerstein, Michael Snyder
    posted to no-tag by Retchless on 2008-05-15 14:12:26 as ** along with 14 people and 1 group djkt urgi chad_davis stajich semrich caseybrown gjuggler biomcgary GeeSharpMinor mapplab faion bpcusack jyuh shurjo Berkeley Mycology
  • Protein abundance profiling of the Escherichia coli cytosol
    BMC Genomics, Vol. 9 (27 February 2008), 102.
    by Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, Ulrich F Hartl, Michael J Kerner, Dmitrij Frishman
    posted to no-tag by Retchless on 2008-04-01 18:22:23 as ** along with 2 people osilander brianb
  • Winners don/'t punish
    Nature, Vol. 452, No. 7185. (20 March 2008), pp. 348-351.
    by Anna Dreber, David G Rand, Drew Fudenberg, Martin A Nowak
    posted to no-tag by Retchless on 2008-03-20 17:18:44 as ** along with 12 people and 1 group dullhunk gennaro Koh cam_webb shivakmr sen_cheng eegilbert yuhc cwmccabe hardin niallhaslam mits VisionLab
  • Bet-hedging and epigenetic inheritance in bacterial cell development
    Proceedings of the National Academy of Sciences (6 March 2008), 0700463105.
    by Jan-Willem Veening, Eric J Stewart, Thomas W Berngruber, Francois Taddei, Oscar P Kuipers, Leendert W Hamoen
    posted to no-tag by Retchless on 2008-03-20 17:14:24 as ** along with 1 person madhadron
  • Evolutionary Dynamics of Prokaryotic Transcriptional Regulatory Networks
    Journal of Molecular Biology, Vol. 358, No. 2. (28 April 2006), pp. 614-633.
    by Madan, Sarah A Teichmann, L Aravind
    posted to bacteria regulation systems by Retchless on 2007-12-18 20:38:40 as ** along with 4 people tny tvdbulck timflutre cjeans
  • The Evolution of Two-Component Systems in Bacteria Reveals Different Strategies for Niche Adaptation
    PLoS Computational Biology, Vol. 2, No. 11. (1 November 2006), e143.
    by Eric Alm, Katherine Huang, Adam Arkin
    posted to bacteria evolution regulation by Retchless on 2007-12-18 20:25:54 as ** along with 1 person treangen
  • Long-Range Periodic Patterns in Microbial Genomes Indicate Significant Multi-Scale Chromosomal Organization
    PLoS Computational Biology, Vol. 2, No. 1. (1 January 2006), e2.
    by Timothy E Allen, Nathan D Price, Andrew R Joyce, Bernhard Palsson
    posted to chromosome by Retchless on 2007-12-18 20:24:38 as **
  • Sequence and functional analyses of Haemophilus spp. genomic islands
    Genome Biology, Vol. 8 (08 November 2007), R237.
    by Mario Juhas, Peter M Power, Rosalind M Harding, David JP Ferguson, Ioanna D Dimopoulou, Abdel RE Elamin, Zaini Mohd-Zain, Derek W Hood, Richard Adegbola, Alice Erwin, Arnold Smith, Robert S Munson, Alistair Harrison, Lucielle Mansfield, Stephen Bentley, Derrick W Crook
    posted to bacteria evolution islands by Retchless on 2007-12-18 19:45:12 as **
  • PLoS ONE: Adaptive Response of a Gene Network to Environmental Changes by Fitness-Induced Attractor Selection
    posted to bacteria evolvability expression feedback noise systems by Retchless on 2007-12-06 19:24:46 as **
  • Toward Automatic Reconstruction of a Highly Resolved Tree of Life
    Science, Vol. 311, No. 5765. (3 March 2006), pp. 1283-1287.
    by Francesca D Ciccarelli, Tobias Doerks, Christian von Mering, Christopher J Creevey, Berend Snel, Peer Bork
    posted to tree by Retchless on 2007-11-26 16:29:17 as read along with 14 people and 5 groups dparks knaseanka dpollard tny dchughes nirfriedman cmm azazello wenhan maximilianh cmzmasek lonshy diamantis Ema EisenLab FAB-lab G4ID Genetics-of-Gambling MBLAB
  • Genome clashes in hybrids: insights from gene expression
    Heredity, Vol. aop, No. current.
    by CR Landry, DL Hartl, JM Ranz
    posted to no-tag by Retchless on 2007-11-26 16:10:52 as ** along with 1 person natstreet
  • Identifying dynamical modules from genetic regulatory systems: applications to the segment polarity network
    BMC Bioinformatics, Vol. 8 (25 October 2007), 413.
    by David J Irons, Nicholas AM Monk
    posted to no-tag by Retchless on 2007-11-14 23:35:41 as ** along with 1 person and 1 group tmmurali csb_journal_club_public
  • Programming gene expression with combinatorial promoters
    Mol Syst Biol, Vol. 3 (13 November 2007)
    by Robert S Cox, Michael G Surette, Michael B Elowitz
    posted to systems by Retchless on 2007-11-14 23:34:04 as ** along with 14 people and 2 groups tmmurali austin dpollard balicea kengg dbikard margaritis lusk cjeans zwang discreteonyxorb cabbagezs Ema tresch EisenLab SynBioSys
  • notes Inference and Analysis of the Relative Stability of Bacterial Chromosomes
    Molecular Biology and Evolution, Vol. 23, No. 3. (March 2006), pp. 513-522.
    by Eduardo P Rocha
    posted to dnamas by Retchless on 2007-11-12 23:42:28 as ** along with 3 people operon bjorns hillevi
  • Identification of DNA Motifs Implicated in Maintenance of Bacterial Core Genomes by Predictive Modeling
    PLoS Genetics, Vol. 3, No. 9. (1 September 2007), e153.
    by David Halpern, Hélène Chiapello, Sophie Schbath, Stéphane Robin, Christelle Hennequet-Antier, Alexandra Gruss, El
    posted to no-tag by Retchless on 2007-11-12 23:39:00 as ** along with 2 people cabbagezs Ema
  • Lengths of chromosomal segments conserved since divergence of man and mouse.
    Proc Natl Acad Sci U S A, Vol. 81, No. 3. (February 1984), pp. 814-818.
    by JH Nadeau, BA Taylor
    posted to dnamas by Retchless on 2007-11-12 23:35:11 as ** along with 2 people AaronDarling maximilianh
  • Temporal Fragmentation of Speciation in Bacteria
    Science, Vol. 317, No. 5841. (24 August 2007), pp. 1093-1096.
    by Adam C Retchless, Jeffrey G Lawrence
    posted to no-tag by Retchless on 2007-10-15 17:25:20 as ** along with 1 person operon
  • Effects of body size and lifestyle on evolution of mammal life histories
    Proceedings of the National Academy of Sciences (12 October 2007), 0707725104.
    by Richard M Sibly, James H Brown
    posted to no-tag by Retchless on 2007-10-15 17:24:44 as **
  • PLoS ONE: Predicting Prokaryotic Ecological Niches Using Genome Sequence Analysis
    posted to no-tag by Retchless on 2007-09-10 23:22:04 as ***
  • The Effect of Stochasticity on the Lac Operon: An Evolutionary Perspective
    PLoS Computational Biology, Vol. 3, No. 6. (1 June 2007), e111.
    by Milan van Hoek, Paulien Hogeweg
    posted to expression feedback noise by Retchless on 2007-06-27 18:06:42 as ** along with 3 people madhadron proulx cjeans
  • An empirical test of the concomitantly variable codon hypothesis
    PNAS (19 June 2007), 0701900104.
    by Lauren M Merlo, Mark Lunzer, Antony M Dean
    posted to coadapation codons by Retchless on 2007-06-27 18:01:53 as ** along with 2 people sebastien_vigneau cjeans
  • Genetic evidence for complex speciation of humans and chimpanzees : Article : Nature
    posted to no-tag by Retchless on 2007-05-04 02:26:09 as **
  • ScienceDirect - Current Biology : Evolutionary Biology: How Did the Human Species Form?
    posted to no-tag by Retchless on 2007-05-04 02:25:14 as **
  • Genome-wide transcriptional plasticity underlies cellular adaptation to novel challenge
    Mol Syst Biol, Vol. 3 (24 April 2007)
    by Shay Stern, Tali Dror, Elad Stolovicki, Naama Brenner, Erez Braun
    posted to no-tag by Retchless on 2007-05-03 18:02:34 as ** along with 3 people kynn zwang bpcusack
  • Wagner's canalization model
    Theoretical Population Biology, Vol. 71, No. 2. (March 2007), pp. 121-130.
    by Emilia Huerta-Sanchez, Rick Durrett
    posted to no-tag by Retchless on 2007-04-30 14:32:07 as **
  • Evolution of coadaptation in a two-locus epistatic system.
    Evolution Int J Org Evolution, Vol. 59, No. 11. (November 2005), pp. 2324-2332.
    by KR Takahasi, F Tajima
    posted to no-tag by Retchless on 2007-04-25 16:51:16 as **
  • Constraints to genetic exchange support gene coadaptation in a tripartite RNA virus.
    PLoS Pathog, Vol. 3, No. 1. (January 2007)
    by F Escriu, A Fraile, F García-Arenal
    posted to no-tag by Retchless on 2007-04-25 16:50:12 as **
  • MOLECULAR-FUNCTIONAL STUDIES OF ADAPTIVE GENETIC VARIATION IN PROKARYOTES AND EUKARYOTES - Annual Review of Genetics, 34(1):593 - Abstract
    posted to no-tag by Retchless on 2007-04-25 16:49:06 as **
  • Gene Cluster Analysis Method Identifies Horizontally Transferred Genes with High Reliability and Indicates that They Provide the Main Mechanism of Operon Gain in 8 Species of -Proteobacteria
    Molecular Biology and Evolution, Vol. 24, No. 3. (March 2007), pp. 805-813.
    by Homma, Keiichi, Fukuchi, Satoshi, Nakamura, Yoji, Gojobori, Takashi, Nishikawa, Ken
    posted to no-tag by Retchless on 2007-04-25 16:43:30 as ** along with 1 person operon
  • Protein Interactions Limit the Rate of Evolution of Photosynthetic Genes in Cyanobacteria
    Molecular Biology and Evolution, Vol. 22, No. 11. (November 2005), pp. 2179-2189.
    by Tuo Shi, Thomas S Bibby, Lin Jiang, Andrew J Irwin, Paul G Falkowski
    posted to no-tag by Retchless on 2007-04-25 16:41:42 as ** along with 1 person tuoshi
  • The Transition between Transcriptional Initiation and Elongation in E. coli Is Highly Variable and Often Rate Limiting
    Molecular Cell, Vol. 24, No. 5. (8 December 2006), pp. 747-757.
    by Nikos B Reppas, Joseph T Wade, George[no-Break Church, Kevin Struhl
    posted to no-tag by Retchless on 2007-04-09 02:01:38 as ** along with 1 person aswin
  • An environmental signature for 323 microbial genomes based on codon adaptation indices
    Genome Biology, Vol. 7 (07 December 2006), R114.
    by Hanni Willenbrock, Carsten Friis, Agnieszka S Juncker, David W Ussery
    posted to no-tag by Retchless on 2007-03-20 03:38:18 as ** along with 3 people gpalidwor aswin marenzelleria
  • Integrating high-throughput and computational data elucidates bacterial networks.
    Nature, Vol. 429, No. 6987. (6 May 2004), pp. 92-96.
    by MW Covert, EM Knight, JL Reed, MJ Herrgard, BO Palsson
    posted to no-tag by Retchless on 2007-03-20 03:32:00 as ** along with 6 people and 2 groups lfriedl RMGraze alexg raiyar JeremyZucker srp33 kdl steinmetzlab
  • Codon adaptation index as a measure of dominating codon bias
    Bioinformatics, Vol. 19, No. 16. (1 November 2003), pp. 2005-2015.
    by A Carbone, A Zinovyev, F Kepes
    posted to no-tag by Retchless on 2007-03-20 03:31:48 as ** along with 3 people operon marenzelleria aaronsmith
  • Error minimization explains the codon usage of highly expressed genes in Escherichia coli.
    Gene, Vol. 387, No. 1-2. (31 January 2007), pp. 150-155.
    by HS Najafabadi, J Lehmann, M Omidi
    posted to no-tag by Retchless on 2007-03-20 02:11:06 as **
  • Prediction of highly expressed genes in microbes based on chromatin accessibility
    BMC Molecular Biology, Vol. 8 (13 February 2007), 11.
    by Hanni Willenbrock, David W Ussery
    posted to no-tag by Retchless on 2007-03-20 02:10:38 as **
  • Coevolution of codon usage and transfer RNA abundance.
    Nature, Vol. 325, No. 6106. (5 1987), pp. 728-730.
    by M Bulmer
    posted to no-tag by Retchless on 2007-03-20 02:08:00 as ** along with 1 person operon
  • Codon bias and gene expression
    FEBS Letters, Vol. 285, No. 2. (July 1991), pp. 165-169.
    by CG Kurland
    posted to no-tag by Retchless on 2007-03-20 01:56:09 as **
  • Increasing NADH oxidation reduces overflow metabolism in Saccharomyces cerevisiae
    PNAS, Vol. 104, No. 7. (13 February 2007), pp. 2402-2407.
    by GN Vemuri, MA Eiteman, JE Mcewen, L Olsson, J Nielsen
    posted to no-tag by Retchless on 2007-02-14 20:37:11 as **
  • Nearly Identical Paralogs: Implications for Maize (Zea mays L.) Genome Evolution
    Genetics, Vol. 175, No. 1. (1 January 2007), pp. 429-439.
    by Scott J Emrich, Li Li, Tsui-Jung Wen, Marna D Yandeau-Nelson, Yan Fu, Ling Guo, Hui-Hsien Chou, Srinivas Aluru, Daniel A Ashlock, Patrick S Schnable
    posted to no-tag by Retchless on 2007-02-14 20:31:20 as ** along with 1 person semrich
  • Control of the endonuclease activity of type I restriction-modification systems is required to maintain chromosome integrity following homologous recombination
    Molecular Microbiology, Vol. 60, No. 4. (May 2006), pp. 883-893.
    by Garry W Blakely, Noreen E Murray
    posted to restruction by Retchless on 2007-01-28 01:14:52 as **
  • Four new type I restriction enzymes identified in Escherichia coli clinical isolates.
    Nucleic Acids Res, Vol. 33, No. 13. (2005)
    by JK Kasarjian, Y Kodama, M Iida, K Matsuda, J Ryu
    posted to restriction by Retchless on 2007-01-28 01:14:45 as **
  • Sau1: a novel lineage-specific type I restriction-modification system that blocks horizontal gene transfer into Staphylococcus aureus and between S. aureus isolates of different lineages.
    J Bacteriol, Vol. 188, No. 15. (August 2006), pp. 5578-5585.
    by DE Waldron, JA Lindsay
    posted to restriction by Retchless on 2007-01-28 01:11:46 as ** along with 2 people CharlesM gwenknight
  • The diversity of alleles at the hsd locus in natural populations of Escherichia coli.
    Genetics, Vol. 140, No. 4. (August 1995), pp. 1187-1197.
    by VA Barcus, AJ Titheradge, NE Murray
    posted to restriction enzymes by Retchless on 2007-01-28 00:47:13 as **
  • Quinone sensing by the circadian input kinase of the cyanobacterial circadian clock
    PNAS, Vol. 103, No. 46. (14 November 2006), pp. 17468-17473.
    by Natalia B Ivleva, Tiyu Gao, Andy C Liwang, Susan S Golden
    posted to no-tag by Retchless on 2006-11-15 18:23:03 as **
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