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Hosna library [155 articles]

最近 Hosna さんのライブラリ .
  • An Interactive Framework for RNA Secondary Structure Prediction with a Dynamical Treatment of Constraints
    Journal of Molecular Biology, Vol. 254, No. 2. (24 November 1995), pp. 163-174.
    by Christine Gaspin, Eric Westhof
    posted to dynamic_constraint rna_folding by Hosna on 2008-06-19 00:16:52 as ** along with 1 person eckart_bindewald
  • Ab initio RNA folding by discrete molecular dynamics: From structure prediction to folding mechanisms
    RNA, Vol. 14, No. 6. (1 June 2008), pp. 1164-1173.
    by Feng Ding, Shantanu Sharma, Poornima Chalasani, Vadim V Demidov, Natalia E Broude, Nikolay V Dokholyan
    posted to 3d_structure non_hierarchical_folding by Hosna on 2008-06-19 00:13:28 as **** along with 2 people carmaus physics
  • Novel and efficient RNA secondary structure prediction using hierarchical folding.
    J Comput Biol, Vol. 15, No. 2. (March 2008), pp. 139-163.
    by H Jabbari, A Condon, S Zhao
    posted to hfold hierarchical_folding kissing_hairpins mfe pseudoknot_prediction rna_folding secondary_structure_prediction by Hosna on 2008-06-18 23:00:40 as read along with 2 people physics eskay
  • In vivo determination of RNA Structure-Function relationships: analysis of the 790 loop in ribosomal RNA
    Journal of Molecular Biology, Vol. 269, No. 5. (27 July 1997), pp. 732-743.
    by Kangseok Lee, Shikha Varma, John Santalucia, Philip R Cunningham
    posted to structure-function by Hosna on 2008-06-18 00:56:30 as **
  • The aptamer core of SAM-IV riboswitches mimics the ligand-binding site of SAM-I riboswitches.
    RNA (New York, N.Y.) (27 March 2008)
    by Zasha Weinberg, Elizabeth E E Regulski, Ming C C Hammond, Jeffrey E E Barrick, Zizhen Yao, Walter L L Ruzzo, Ronald R R Breaker
    posted to pseudoknots by Hosna on 2008-04-22 22:19:40 as ***
  • From knotted to nested RNA structures: A variety of computational methods for pseudoknot removal
    RNA, Vol. 14, No. 3. (1 March 2008), pp. 410-416.
    by Sandra Smit, Kristian Rother, Jaap Heringa, Rob Knight
    posted to independent_set pseudoknot-removal by Hosna on 2008-04-18 20:17:41 as *****
  • New clique and independent set algorithms for circle graphs
    Discrete Applied Mathematics, Vol. 36, No. 1. (30 March 1992), pp. 1-24.
    by Alberto Apostolico, Mikhail J Atallah, Susanne E Hambrusch
    posted to independent_set by Hosna on 2008-04-18 20:05:17 as *****
  • A New Simple Algorithm for the Maximum-Weight Independent Set Problem on Circle Graphs
    Algorithms and Computation (2003), pp. 129-137.
    by Gabriel Valiente
    posted to independent_set by Hosna on 2008-04-11 22:27:36 as **** along with 1 person ima
  • KnotSeeker: Heuristic pseudoknot detection in long RNA sequences
    RNA, Vol. 14, No. 4. (1 April 2008), pp. 630-640.
    by Jana Sperschneider, Amitava Datta
    posted to heuristic pseudoknot_prediction by Hosna on 2008-03-26 22:26:08 as **** along with 2 people condon physics
  • Efficient parameter estimation for RNA secondary structure prediction.
    Bioinformatics, Vol. 23, No. 13. (1 July 2007)
    by Mirela Andronescu, Anne Condon, Holger H H Hoos, David H H Mathews, Kevin P P Murphy
    posted to estimation parameter by Hosna on 2007-12-19 19:44:23 as *** along with 2 groups Bioinformatics beta
  • Variations on RNA folding and alignment: lessons from Benasque
    Journal of Mathematical Biology, Vol. 56, No. 1. (24 January 2008), pp. 129-144.
    by Athanasius Bompfünewerer, Rolf Backofen, Stephan Bernhart, Jana Hertel, Ivo Hofacker, Peter Stadler, Sebastian Will
    posted to rna-rna by Hosna on 2007-12-13 23:27:53 as ****
  • The computer simulation of RNA folding pathways using a genetic algorithm.
    J Mol Biol, Vol. 250, No. 1. (30 June 1995), pp. 37-51.
    by AP Gultyaev, FH van Batenburg, CW Pleij
    posted to parameter secondary_structure_prediction by Hosna on 2007-11-21 21:04:49 as **** along with 2 people and 1 group condon guxiyou beta
  • Single-molecule mechanical unfolding and folding of a pseudoknot in human telomerase RNA
    RNA (24 October 2007), rna.676707.
    by Gang Chen, Jin-Der Wen, Ignacio Tinoco
    posted to rna_folding_path by Hosna on 2007-11-15 22:40:04 as *****
  • Tree adjoining grammars for RNA structure prediction
    Theoretical Computer Science, Vol. 210, No. 2. (17 January 1999), pp. 277-303.
    by Yasuo Uemura, Aki Hasegawa, Satoshi Kobayashi, Takashi Yokomori
    posted to review secondary_structure_prediction by Hosna on 2007-11-06 23:14:19 as ** along with 3 people and 1 group condon Kiarostami guxiyou beta
  • Sfold web server for statistical folding and rational design of nucleic acids.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by Y Ding, CY Chan, CE Lawrence
    posted to review by Hosna on 2007-11-05 21:31:12 as ** along with 4 people jyuh eckart_bindewald mtagaya j_rodriguez
  • Thermodynamics of RNARNA binding
    Bioinformatics, Vol. 22, No. 10. (15 May 2006), pp. 1177-1182.
    by Ulrike Muckstein, Hakim Tafer, Jorg Hackermuller, Stephan H Bernhart, Peter F Stadler, Ivo L Hofacker
    posted to review rna-rna by Hosna on 2007-11-05 21:19:27 as ** along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • Secondary Structure Prediction of Interacting RNA Molecules
    Journal of Molecular Biology, Vol. 345, No. 5., pp. 987-1001.
    by Mirela Andronescu, Zhi C Zhang, Anne Condon
    posted to review by Hosna on 2007-11-05 21:06:36 as ** along with 4 people and 2 groups marcius eckart_bindewald cthachuk physics BioinfoCIPF SGU-CIPF
  • Fast Algorithm for Predicting the Secondary Structure of Single-Stranded RNA
    PNAS, Vol. 77, No. 11. (1 November 1980), pp. 6309-6313.
    by Ruth Nussinov, Ann B Jacobson
    posted to review by Hosna on 2007-11-05 20:30:04 as ** along with 2 people and 1 group arcticrasta condon beta
  • Comparative sequence analysis as a tool for studying the secondary structure of mRNAs.
    Nucleic Acids Res, Vol. 13, No. 23. (9 December 1985), pp. 8645-8660.
    by MF Browner, CB Lawrence
    posted to review by Hosna on 2007-11-05 20:24:10 as **
  • From The Cover: Triggered amplification by hybridization chain reaction
    PNAS, Vol. 101, No. 43. (26 October 2004), pp. 15275-15278.
    by Robert M Dirks, Niles A Pierce
    posted to dna review rnai by Hosna on 2007-11-05 20:21:21 as ** along with 2 people stsaft cthachuk
  • Directed evolution of nucleic acid enzymes.
    Annu Rev Biochem, Vol. 73 (2004), pp. 791-836.
    by GF Joyce
    posted to review rnai by Hosna on 2007-11-05 20:06:30 as ** along with 3 people and 3 groups rklancer marcius condon beta BioinfoCIPF SGU-CIPF
  • Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline
    Nucl. Acids Res. (9 July 2007), gkm487.
    by Zasha Weinberg, Jeffrey E Barrick, Zizhen Yao, Adam Roth, Jane N Kim, Jeremy Gore, Joy X Wang, Elaine R Lee, Kirsten F Block, Narasimhan Sudarsan, Shane Neph, Martin Tompa, Walter L Ruzzo, Ronald R Breaker
    posted to review rnai by Hosna on 2007-11-05 19:40:01 as ** along with 2 people ceciklein elfar
  • REGULATION OF BACTERIAL GENE EXPRESSION BY RIBOSWITCHES.
    Annu Rev Microbiol, Vol. 59 (13 October 2005), pp. 487-517.
    by Wade C C Winkler, Ronald R R Breaker
    posted to review rnai by Hosna on 2007-11-05 19:19:48 as ** along with 1 person sglandt
  • The chemical repertoire of natural ribozymes.
    Nature, Vol. 418, No. 6894. (11 July 2002), pp. 222-228.
    by JA Doudna, TR Cech
    posted to review rnai by Hosna on 2007-11-05 19:16:43 as ** along with 2 people and 2 groups dayjm marcius BioinfoCIPF SGU-CIPF
  • BREAKTHROUGH OF THE YEAR: Small RNAs Make Big Splash
    Science, Vol. 298, No. 5602. (20 December 2002), pp. 2296-2297.
    by Jennifer Couzin
    posted to review rnai by Hosna on 2007-11-05 19:14:19 as **
  • Antisense RNAs everywhere?
    Trends in Genetics, Vol. 18, No. 5. (1 May 2002), pp. 223-226.
    by Wagner, Klas Flardh
    posted to rnai by Hosna on 2007-10-26 20:54:40 as *****
  • The role of site accessibility in microRNA target recognition
    Nat Genet, Vol. 39, No. 10. (October 2007), pp. 1278-1284.
    by Michael Kertesz, Nicola Iovino, Ulrich Unnerstall, Ulrike Gaul, Eran Segal
    posted to rnai by Hosna on 2007-10-24 00:10:41 as ***** along with 13 people and 1 group mtagaya rdiaz djkt Garamonfok physics bootsy epigenetics lp2 cabbagezs heliopais uwe yavanna maralena microRNA
  • Fast and effective prediction of microRNA/target duplexes.
    RNA, Vol. 10, No. 10. (October 2004), pp. 1507-1517.
    by M Rehmsmeier, P Steffen, M Hochsmann, R Giegerich
    posted to rnai by Hosna on 2007-10-21 22:39:33 as ***** along with 4 people and 1 group eckart_bindewald mortenlindow mtagaya maralena microRNA
  • Impact of RNA interference on gene networks.
    Metab Eng (4 August 2006)
    by Laetitia Malphettes, Martin Fussenegger
    posted to rnai by Hosna on 2007-10-16 01:34:29 as **** along with 3 people and 2 groups bala tardigrade andersbj microRNA DictyosteliumGroup
  • Genomic approaches to drug discovery
    Current Opinion in Chemical Biology, Vol. 10, No. 4. (August 2006), pp. 303-308.
    by Darrell O Ricke, Shaowen Wang, Richard Cai, Dalia Cohen
    posted to rnai by Hosna on 2007-10-16 01:31:32 as **** along with 1 person tardigrade
  • RNAi in moderation
    Nature Biotechnology, Vol. 24, No. 7., pp. 796-797.
    by Sailen Barik
    posted to rnai by Hosna on 2007-10-16 01:28:55 as ** along with 1 person tardigrade
  • Beyond Mfold: Recent advances in RNA bioinformatics.
    J Biotechnol (9 March 2006)
    by Jens Reeder, Matthias Höchsmann, Marc Rehmsmeier, Björn Voss, Robert Giegerich
    posted to rnai by Hosna on 2007-10-16 01:26:03 as **** along with 12 people and 4 groups marcius eckart_bindewald tardigrade andersbj arcticrasta mtagaya condon Eonwe cthachuk stajich physics reyez microRNA beta BioinfoCIPF SGU-CIPF
  • RNAi and microRNAs: from animal models to disease therapy.
    Birth Defects Res C Embryo Today, Vol. 78, No. 2. (June 2006), pp. 150-171.
    by A Fjose, O Drivenes
    posted to rnai by Hosna on 2007-10-16 01:14:57 as **** along with 1 person tardigrade
  • Running Interference: Prospects and Obstacles to Using Small Interfering RNAs as Small Molecule Drugs.
    Annu Rev Biomed Eng (29 June 2005)
    by Derek M M Dykxhoorn, Judy Lieberman
    posted to rnai by Hosna on 2007-10-16 01:11:18 as **** along with 2 people eckart_bindewald tardigrade
  • RNA interference as a gene-specific approach for molecular medicine.
    Curr Med Chem, Vol. 12, No. 26. (2005), pp. 3143-3161.
    by A Grünweller, RK Hartmann
    posted to rnai by Hosna on 2007-10-16 01:08:40 as **** along with 2 people tardigrade tabu
  • Cell microarrays and RNA interference chip away at gene function.
    Nat Genet, Vol. 37 Suppl (June 2005)
    by DB Wheeler, AE Carpenter, DM Sabatini
    posted to rnai by Hosna on 2007-10-16 01:03:19 as **** along with 2 people jyuh textoris
  • A brief history of RNAi: the silence of the genes.
    FASEB J, Vol. 20, No. 9. (July 2006), pp. 1293-1299.
    by GL Sen, HM Blau
    posted to rnai by Hosna on 2007-10-16 01:02:15 as **** along with 8 people and 2 groups bala tkershaw tardigrade mgantier Fritz adalb_decode srfairclough epigenetics neurolit DictyosteliumGroup
  • Perspective: machines for RNAi
    Genes Dev., Vol. 19, No. 5. (1 March 2005), pp. 517-529.
    by Yukihide Tomari, Phillip D Zamore
    posted to rnai by Hosna on 2007-10-16 01:00:04 as **** along with 2 people ttjoseph shuzhens
  • RNAi: the nuts and bolts of the RISC machine.
    Cell, Vol. 122, No. 1. (15 July 2005), pp. 17-20.
    by W Filipowicz
    posted to rnai by Hosna on 2007-10-16 00:59:03 as ** along with 2 people and 1 group ttjoseph dpollard RockmanLab
  • Enhancing and confirming the specificity of RNAi experiments
    Nature Methods, Vol. 3, No. 9. (23 August 2006), pp. 677-681.
    by Bryan R Cullen
    posted to rnai by Hosna on 2007-10-16 00:57:46 as **** along with 7 people and 3 groups jyuh ecattell tardigrade dchughes Fritz Verena isera G4ID neurolit Genetics-of-Gambling
  • Unlocking the potential of the human genome with RNA interference
    Nature, Vol. 431, No. 7006. (2004), pp. 371-378.
    by Gregory J Hannon, John J Rossi
    posted to rnai by Hosna on 2007-10-16 00:55:51 as **** along with 2 people and 1 group xtizon Fritz neurolit
  • RNA interference: its use as antiviral therapy.
    Handb Exp Pharmacol, No. 173. (2006), pp. 117-150.
    by J Haasnoot, B Berkhout
    posted to rnai by Hosna on 2007-10-16 00:53:45 as **** along with 2 people tardigrade zyb301214
  • Thermodynamic Analysis of Interacting Nucleic Acid Strands
    SIAM Review, Vol. 49, No. 1. (2007), pp. 65-88.
    by Robert M Dirks, Justin S Bois, Joseph M Schaeffer, Erik Winfree, Niles A Pierce
    posted to rnai rna-rna by Hosna on 2007-10-16 00:33:15 as ***** along with 1 person stsaft
  • Space and Time Efficient Algorithms to Discover Endogenous RNAi Patterns in Complete Genome Data
    Bioinformatics Research and Applications (2007), pp. 260-269.
    by Sudha Balla, Sanguthevar Rajasekaran
    posted to rnai by Hosna on 2007-10-09 19:34:05 as *****
  • Integrated siRNA design based on surveying of features associated with high RNAi effectiveness
    BMC Bioinformatics, Vol. 7 (27 November 2006), 516.
    by Wuming Gong, Yongliang Ren, Qiqi Xu, Yejun Wang, Dong Lin, Haiyan Zhou, Tongbin Li
    posted to rnai by Hosna on 2007-10-09 19:32:27 as ***** along with 2 people puranjoy_b tardigrade
  • An economic and efficient method of RNAi vector constructions
    Analytical Biochemistry, Vol. 334, No. 1. (1 November 2004), pp. 199-200.
    by Jinghua T Chang
    posted to rnai by Hosna on 2007-10-09 19:29:50 as **
  • OptiRNAi, an RNAi design tool
    Computer Methods and Programs in Biomedicine, Vol. 75, No. 1. (July 2004), pp. 67-73.
    by Wenwu Cui, Jianchang Ning, Ulhas P Naik, Melinda K Duncan
    posted to rnai by Hosna on 2007-10-09 19:27:34 as *****
  • A DNA vector-based RNAi technology to suppress gene expression in mammalian cells
    Proceedings of the National Academy of Sciences, Vol. 99, No. 8. (16 April 2002), pp. 5515-5520.
    by Guangchao Sui, Christina Soohoo, El B Affar, Frederique Gay, Yujiang Shi, William C Forrester, Yang Shi
    posted to rnai by Hosna on 2007-10-09 19:23:57 as ***** along with 1 person clearbluespring
  • Expression profiling reveals off-target gene regulation by RNAi.
    Nat Biotechnol, Vol. 21, No. 6. (June 2003), pp. 635-637.
    by AL Jackson, SR Bartz, J Schelter, SV Kobayashi, J Burchard, M Mao, B Li, G Cavet, PS Linsley
    posted to rnai rna-rna by Hosna on 2007-10-09 19:19:05 as ** along with 1 person mtagaya
  • Killing the messenger: short RNAs that silence gene expression.
    Nat Rev Mol Cell Biol, Vol. 4, No. 6. (June 2003), pp. 457-467.
    by DM Dykxhoorn, CD Novina, PA Sharp
    posted to rnai rna-rna by Hosna on 2007-10-09 19:16:30 as *****
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