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GustavoLacerda library [155 articles]

最近 GustavoLacerda さんのライブラリ .
  • CompariMotif: quick and easy comparisons of sequence motifs
    Bioinformatics, Vol. 24, No. 10. (15 May 2008), pp. 1307-1309.
    by Richard J Edwards, Norman E Davey, Denis C Shields
    posted to regulation motif by GustavoLacerda on 2008-05-09 13:42:20 as ** along with 2 people jyuh maximilianh
  • EST assembly supported by a draft genome sequence: an analysis of the Chlamydomonas reinhardtii transcriptome.
    Nucleic Acids Res (1 April 2007)
    by Monica Jain, Jeff Shrager, Elizabeth H H Harris, Renee Halbrook, Arthur R R Grossman, Charles Hauser, Olivier Vallon
    posted to est2genome est assembly by GustavoLacerda on 2008-05-07 16:16:13 as ** along with 1 group Bioinformatics
  • Quality scores and SNP detection in sequencing-by-synthesis systems
    Genome Res. (22 January 2008), gr.070227.107.
    by William Brockman, Pablo Alvarez, Sarah Young, Manuel Garber, Georgia Giannoukos, William L Lee, Carsten Russ, Eric S Lander, Chad Nusbaum, David B Jaffe
    posted to assembly 454 by GustavoLacerda on 2008-05-06 18:20:19 as ** along with 3 people caseybrown Neeperando bpb
  • Empirical comparison of ab initio repeat finding programs
    Nucl. Acids Res. (20 February 2008), gkn064.
    by Surya Saha, Susan Bridges, Zenaida V Magbanua, Daniel G Peterson
    posted to repeat by GustavoLacerda on 2008-05-05 18:18:55 as ** along with 4 people Ema operon timflutre wisdom_love
  • Comparative analysis of sequence features involved in the recognition of tandem splice sites
    BMC Genomics, Vol. 9 (30 April 2008), 202.
    by Ralf Bortfeldt, Stefanie Schindler, Karol Szafranski, Stefan Schuster, Dirk Holste
    posted to splicing genefinding by GustavoLacerda on 2008-05-05 17:59:25 as **
  • What is principal component analysis?
    Nature Biotechnology, Vol. 26, No. 3., pp. 303-304.
    by Markus Ringnér
    posted to pca statistics by GustavoLacerda on 2008-04-01 22:00:09 as ** along with 45 people and 3 groups laharrin chrissp100 xingxu dekay23 rvosa i-stevenson dimka dayjm markusd ashko craigwilson06 abbie_riner quianominorleo bibay2004 jfr kristgy pavanghatty rchauhan waghsk hpaces adacier fryanpan sobolevnrm Yanno jyuh operon barry baaic dullhunk Bevan_Weir zeji gareth massivemayhem zwang GeeSharpMinor bmaust zambujo mingzhi starz1010101 maralena wchannels sunhwan jennifermbui kdelavega zhouyu FAB-lab Bioinformatics baker-group
  • RNACompress: Grammar-based compression and informational complexity measurement of RNA secondary structure
    BMC Bioinformatics, Vol. 9 (31 March 2008), 176.
    by Qi Liu, Yu Yang, Chun Chen, Jiajun Bu, Yin Zhang, Xiuzi Ye
    posted to compression by GustavoLacerda on 2008-04-01 20:52:25 as **
  • Rare Structural Variants Disrupt Multiple Genes in Neurodevelopmental Pathways in Schizophrenia
    Science (27 March 2008), 1155174.
    by Tom Walsh, Jon M Mcclellan, Shane E Mccarthy, Anjene M Addington, Sarah B Pierce, Greg M Cooper, Alex S Nord, Mary Kusenda, Dheeraj Malhotra, Abishek Bhandari, Sunday M Stray, Caitlin F Rippey, Patricia Roccanova, Vlad Makarov, B Lakshmi, Robert L Findling, Linmarie Sikich, Thomas Stromberg, Barry Merriman, Nitin Gogtay, Philip Butler, Kristen Eckstrand, Laila Noory, Peter Gochman, Robert Long, Zugen Chen, Sean Davis, Carl Baker, Evan E Eichler, Paul S Meltzer, Stanley F Nelson, Andrew B Singleton, Ming K Lee, Judith L Rapoport, Mary-Claire King, Jonathan Sebat
    posted to schizophrenia by GustavoLacerda on 2008-03-28 13:35:11 as ** along with 7 people and 1 group renatomilani lisa1 djkt giovanni sekulerlab MWagner applebyb VisionLab
  • Origins and evolution of spliceosomal introns.
    Annu Rev Genet, Vol. 40 (2006), pp. 47-76.
    by F Rodríguez-Trelles, R Tarrío, FJ Ayala
    posted to intron by GustavoLacerda on 2008-03-19 18:51:25 as ** along with 1 person timflutre
  • Mitochondrial introns: a critical view
    Trends in Genetics, Vol. 23, No. 3. (March 2007), pp. 119-125.
    by Franz B Lang, Marie-Josee Laforest, Gertraud Burger
    posted to fungi genefinding intron mitochondria by GustavoLacerda on 2008-03-18 19:25:34 as **
  • prot4EST: Translating Expressed Sequence Tags from neglected genomes
    BMC Bioinformatics, Vol. 5, No. 1. (2004)
    by James Wasmuth, Mark Blaxter
    posted to est genefinding by GustavoLacerda on 2008-03-18 17:41:40 as **
  • Sequencing and analysis of the gene-rich space of cowpea
    BMC Genomics, Vol. 9 (27 February 2008), 103.
    by Michael P Timko, Paul J Rushton, Thomas W Laudeman, Marta T Bokoviec, Edmond Chipumuro, Foo Cheung, Christopher D Town, Xianfeng Chen
    posted to cowpea by GustavoLacerda on 2008-03-17 13:40:52 as **
  • Detection and validation of single feature polymorphisms in cowpea (Vigna unguiculata L. Walp) using a soybean genome array
    BMC Genomics, Vol. 9 (28 February 2008), 107.
    by Sayan Das, Prasanna R Bhat, Chinta Sudhakar, Jeffrey D Ehlers, Steve Wanamaker, Philip A Roberts, Xinping Cui, Timothy J Close
    posted to cowpea by GustavoLacerda on 2008-03-17 13:34:23 as **
  • The Genome Assembly Archive: A New Public Resource
    PLoS Biology, Vol. 2, No. 9. (1 September 2004), e285.
    by Steven L Salzberg, Deanna Church, Michael Dicuccio, Eugene Yaschenko, James Ostell
    posted to assembly by GustavoLacerda on 2008-03-14 14:22:09 as ** along with 1 person and 1 group tpreeprem gatech-compgenomics
  • SOAP: short oligonucleotide alignment program.
    Bioinformatics (28 January 2008)
    by Ruiqiang Li, Yingrui Li, Karsten Kristiansen, Jun Wang
    posted to assembly by GustavoLacerda on 2008-03-14 14:21:05 as ** along with 6 people urgi caseybrown jyuh ghattem niallhaslam mdimon
  • Bioinformatics challenges of new sequencing technology
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Mihai Pop, Steven L Salzberg
    posted to 454 assembly by GustavoLacerda on 2008-03-13 20:04:53 as ** along with 8 people mariakmejia jfr Neeperando jmeppley dchughes djkt niallhaslam urgi
  • A machine-learning approach to combined evidence validation of genome assemblies
    Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 744-750.
    by Jeong-Hyeon Choi, Sun Kim, Haixu Tang, Justen Andrews, Don G Gilbert, John K Colbourne
    posted to assembly by GustavoLacerda on 2008-03-13 19:55:37 as ** along with 1 person Neeperando
  • Finding exonic islands in a sea of non-coding sequence: splicing related constraints on protein composition and evolution are common in intron-rich genomes
    Genome Biology, Vol. 9, No. 2. (2008)
    by Tobias Warnecke, Joanna Parmley, Laurence Hurst
    posted to genefinding splicing by GustavoLacerda on 2008-03-04 14:05:49 as ** along with 1 person biomcgary
  • Some aspects of the venom proteome of the Colubridae snake Philodryas olfersii revealed from a Duvernoy's (venom) gland transcriptome
    FEBS Letters, Vol. 580, No. 18. (7 August 2006), pp. 4417-4422.
    by Ana T Ching, Marisa M Rocha, Paes, Daniel C Pimenta, de Fatima, Solange M Serrano, Paulo L Ho, Inacio L Junqueira-De-Azevedo
    posted to snake by GustavoLacerda on 2008-02-25 15:28:05 as **
  • Short read fragment assembly of bacterial genomes
    Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 324-330.
    by Mark J Chaisson, Pavel A Pevzner
    posted to 454 by GustavoLacerda on 2008-02-14 19:30:57 as ** along with 3 people azazello dandaman caseybrown
  • A novel genome-scale repeat finder geared towards transposons
    Bioinformatics, Vol. 24, No. 4. (15 February 2008), pp. 468-476.
    by Xuehui Li, Tamer Kahveci, Mark A Settles
    posted to genomics repeat transposons by GustavoLacerda on 2008-02-14 18:21:02 as ** along with 1 person and 1 group idonaldson BergmanLab
  • Figaro: a novel statistical method for vector sequence removal
    Bioinformatics, Vol. 24, No. 4. (15 February 2008), pp. 462-467.
    by James R White, Michael Roberts, James A Yorke, Mihai Pop
    posted to genomics screening by GustavoLacerda on 2008-02-14 18:20:35 as ** along with 1 person jyuh
  • OSLay: optimal syntenic layout of unfinished assemblies
    Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. 1573-1579.
    by Daniel C Richter, Stephan C Schuster, Daniel H Huson
    posted to 454 assembly by GustavoLacerda on 2008-02-07 17:23:06 as **
  • The year of sequencing
    Nature Methods, Vol. 5, No. 1., pp. 11-14.
    by Kelly R Chi
    posted to 454 by GustavoLacerda on 2008-02-07 16:43:32 as **
  • SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing.
    Genome Res, Vol. 17, No. 11. (November 2007), pp. 1697-1706.
    by Juliane C C Dohm, Claudio Lottaz, Tatiana Borodina, Heinz Himmelbauer
    posted to assembly by GustavoLacerda on 2008-01-31 17:07:52 as ** along with 7 people and 1 group jwhitney timflutre stajich ghattem azazello niallhaslam flexer Berkeley Mycology
  • Discovering and detecting transposable elements in genome sequences.
    Brief Bioinform (10 October 2007)
    by Casey M M Bergman, Hadi Quesneville
    posted to transposons by GustavoLacerda on 2008-01-25 17:06:17 as ** along with 8 people and 2 groups gpappas dpollard timflutre cabbagezs maximilianh cisevol urgi yoanjacquemin EisenLab BergmanLab
  • A practical guide to the art of RNA gene prediction
    Brief Bioinform (4 May 2007), bbm011.
    by Irmtraud M Meyer
    posted to genefinding by GustavoLacerda on 2008-01-25 17:05:59 as ** along with 4 people xingxu penka wenhan xili03
  • GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by J Besemer, M Borodovsky
    posted to genefinding by GustavoLacerda on 2008-01-23 23:23:35 as ** along with 2 people jmeppley wenhan
  • MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes
    Genome Res. (19 November 2007), gr.6743907.
    by Brandi L Cantarel, Ian Korf, Sofia M Robb, Genis Parra, Eric Ross, Barry Moore, Carson Holt, Sanchez, Mark Yandell
    posted to genefinding by GustavoLacerda on 2008-01-23 23:22:03 as ** along with 3 people timflutre stajich urgi
  • Improving gene recognition accuracy by combining predictions from two gene-finding programs
    Bioinformatics, Vol. 18, No. 8. (1 August 2002), pp. 1034-1045.
    by Sanja Rogic, Francis BF Ouellette, Alan K Mackworth
    posted to genefinding by GustavoLacerda on 2008-01-22 18:25:41 as ** along with 1 person and 1 group indigoviolet EisenLab
  • From Pathways Databases to Network Models of Switching Behavior
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e152.
    by Baltazar D Aguda, Andrew B Goryachev
    posted to systems_biology by GustavoLacerda on 2008-01-22 17:45:36 as ** along with 3 people and 1 group balicea cjeans sobolevnrm baker-group
  • Getting Started in Probabilistic Graphical Models
    PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e252.
    by Edoardo M Airoldi
    posted to genefinding graphical_models by GustavoLacerda on 2008-01-22 17:36:25 as ** along with 11 people and 1 group jyuh balicea AbnerCYH stajich cjeans GeeSharpMinor sobolevnrm cabbagezs nklee biehl softsimu baker-group
  • Analysis of Sequence Conservation at Nucleotide Resolution
    PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e254.
    by Saurabh Asthana, Mikhail Roytberg, John Stamatoyannopoulos, Shamil Sunyaev
    posted to philogeny by GustavoLacerda on 2008-01-22 17:34:11 as ** along with 4 people aprasad djkt nklee maximilianh
  • Practical Strategies for Discovering Regulatory DNA Sequence Motifs
    PLoS Computational Biology, Vol. 2, No. 4. (1 April 2006), e36.
    by Kenzie D Macisaac, Ernest Fraenkel
    posted to regulation by GustavoLacerda on 2008-01-21 19:35:00 as ** along with 5 people and 2 groups ana chad_davis balicea hggr svdate structural_bioinformatics Bioinformatics
  • Advancing the State of the Art in Computational Gene Prediction
    Knowledge Discovery and Emergent Complexity in Bioinformatics (2007), pp. 81-106.
    by William Majoros, Uwe Ohler
    posted to genefinding by GustavoLacerda on 2008-01-21 12:40:23 as **
  • Gene discovery and transcript analyses in the corn smut pathogen Ustilago maydis: expressed sequence tag and genome sequence comparison
    BMC Genomics, Vol. 8 (24 September 2007), 334.
    by Eric CH Ho, Matt J Cahill, Barry J Saville
    posted to antisense_transcription by GustavoLacerda on 2008-01-18 19:48:08 as **
  • The fungus Ustilago maydis and humans share disease-related proteins that are not found in Saccharomyces cerevisiae
    BMC Genomics, Vol. 8 (20 December 2007), 473.
    by Martin Muensterkoetter, Gero Steinberg
    posted to fungi by GustavoLacerda on 2008-01-18 19:15:09 as ** along with 1 person and 1 group stajich Berkeley Mycology
  • Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
    Genome Biology, Vol. 9 (11 January 2008), R7.
    by Brian J Haas, Steven L Salzberg, Wei Zhu, Mihaela Pertea, Jonathan E Allen, Joshua Orvis, Owen R White, Robin C Buell, Jennifer R Wortman
    posted to genefinding by GustavoLacerda on 2008-01-18 19:10:27 as ** along with 2 people and 1 group stajich mclarenv Berkeley Mycology
  • Divergence of Transcription Factor Binding Sites Across Related Yeast Species
    Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819.
    by Anthony R Borneman, Tara A Gianoulis, Zhengdong D Zhang, Haiyuan Yu, Joel Rozowsky, Michael R Seringhaus, Lu Y Wang, Mark Gerstein, Michael Snyder
    posted to regulation by GustavoLacerda on 2008-01-09 15:24:55 as ** along with 16 people and 2 groups anka nklee aalibes chad_davis dpollard djkt mikaelhuss lusk cjeans sujaikumar zwang Jporci maximilianh cisevol njcitulike emptyhb EisenLab cis-regulatory-evolution
  • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
    Nucleic Acids Res, Vol. 25, No. 17. (1 September 1997), pp. 3389-3402.
    by SF Altschul, TL Madden, AA Schäffer, J Zhang, Z Zhang, W Miller, DJ Lipman
    posted to alignment by GustavoLacerda on 2008-01-09 15:17:56 as ** along with 37 people and 4 groups mariakmejia knaseanka setar iakes miguel kaarsinogen bjorns bicko jmeppley chad_davis balajis nuke2005 eweaver indigoviolet dullhunk robert dgront happy_manatee caporaso treangen kengg manzanita leelarcombe CitoJam jdelcampo aengisch rabio massivemayhem mirzazadeh azazello sujaikumar beatrizfernandez siebertm adijr viktor21614 mijam grottenolm EisenLab biomedical-nlp Microbial-Ecology Plantandetc
  • Comparative genome analysis across a kingdom of eukaryotic organisms: Specialization and diversification in the Fungi
    Genome Res. (5 November 2007), gr.6531807.
    by Michael J Cornell, Intikhab Alam, Darren M Soanes, Han M Wong, Cornelia Hedeler, Norman W Paton, Magnus Rattray, Simon J Hubbard, Nicholas J Talbot, Stephen G Oliver
    posted to fungi by GustavoLacerda on 2008-01-07 16:43:02 as ** along with 5 people and 1 group stajich grahamc nklee idonaldson seitentaisei Berkeley Mycology
  • CONTRAST: a discriminative, phylogeny-free approach to multiple informant de novo gene prediction
    Genome Biology, Vol. 8 (20 December 2007), R269.
    by Samuel S Gross, Chuong B Do, Marina Sirota, Serafim Batzoglou
    posted to genefinding by GustavoLacerda on 2008-01-07 14:51:24 as ** along with 2 people and 2 groups stajich renatomilani EisenLab Berkeley Mycology
  • BLISS 2.0: a web-based tool for predicting conserved regulatory modules in distantly-related orthologous sequences.
    Bioinformatics (27 July 2007)
    by Hailong Meng, Arunava Banerjee, Lei Zhou
    posted to regulation by GustavoLacerda on 2007-12-10 19:47:14 as ** along with 2 people and 1 group grahamc maximilianh ParkinsonLab_at_MaRS
  • Global repeat discovery and estimation of genomic copy number in a large, complex genome using a high-throughput 454 sequence survey
    BMC Genomics, Vol. 8 (24 May 2007), 132.
    by Kankshita Swaminathan, Kranthi Varala, Matthew E Hudson
    posted to 454 by GustavoLacerda on 2007-12-04 16:25:38 as ** along with 2 people and 2 groups ghattem tpreeprem BergmanLab gatech-compgenomics
  • Assembling genomes on large-scale parallel computers
    Journal of Parallel and Distributed Computing, Vol. In Press, Corrected Proof
    by A Kalyanaraman, SJ Emrich, PS Schnable, S Aluru
    posted to 454 by GustavoLacerda on 2007-11-25 00:17:58 as **
  • Binding Site Graphs: A New Graph Theoretical Framework for Prediction of Transcription Factor Binding Sites
    PLoS Computational Biology, Vol. 3, No. 5. (1 May 2007), e90.
    by Timothy E Reddy, Charles Delisi, Boris E Shakhnovich
    posted to regulation by GustavoLacerda on 2007-11-24 03:16:41 as **** along with 5 people and 1 group aalibes dpollard medic0747 mircea marti EisenLab
  • WormBase: a comprehensive data resource for Caenorhabditis biology and genomics.
    Nucleic Acids Res, Vol. 33, No. Database Issue. (1 January 2005)
    by Nansheng Chen, Todd W W Harris, Igor Antoshechkin, Carol Bastiani, Tamberlyn Bieri, Darin Blasiar, Keith Bradnam, Payan Canaran, Juancarlos Chan, Chao-Kung K Chen, Wen J J Chen, Fiona Cunningham, Paul Davis, Eimear Kenny, Ranjana Kishore, Daniel Lawson, Raymond Lee, Hans-Michael M Muller, Cecilia Nakamura, Shraddha Pai, Philip Ozersky, Andrei Petcherski, Anthony Rogers, Aniko Sabo, Erich M M Schwarz, Kimberly Van Auken, Qinghua Wang, Richard Durbin, John Spieth, Paul W W Sternberg, Lincoln D D Stein
    posted to genome by GustavoLacerda on 2007-11-19 18:51:11 as ** along with 3 people rklancer nuke2005 maryee
  • FlyBase: genes and gene models.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by RA Drysdale, MA Crosby,
    posted to genefinding genome by GustavoLacerda on 2007-11-19 18:48:56 as ** along with 2 people dragonrez nuke2005
  • Conrad: Gene prediction using conditional random fields
    posted to genefinding by GustavoLacerda on 2007-10-27 06:35:01 as **
  • EuSplice: A unified resource for the analysis of splice signals and alternative splicing in eukaryotic genes.
    Bioinformatics (7 March 2007)
    by Ashwini Bhasi, Ram Vinay V Pandey, Suriya Prabha P Utharasamy, Periannan Senapathy
    posted to genefinding splicing by GustavoLacerda on 2007-10-27 05:48:11 as ** along with 1 person jyuh
    • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/user/GustavoLacerda

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