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Evangelia rev_ref [49 articles]

最近 Evangelia さんのライブラリに追加された論文の中から タグ rev_ref. You can also see everyone's rev_ref.
  • Targeting the c-Myc coiled coil with interfering peptides.
    J Pept Sci. (9 May 2008)
    by EM Jouaux, K Schmidtkunz, KM Müller, KM Arndt
    posted to rev_ref peptide by Evangelia on 2008-05-23 16:31:26 as **
  • Intrinsic Protein Disorder in Complete Genomes
    Genome Inform Ser Workshop Genome Inform., Vol. 11 (2000), pp. 161-71.
    by AK Dunker, Z Obradovic, Romero, EC Garner, CJ Brown
    posted to rev_ref protein disorder by Evangelia on 2008-05-23 16:24:19 as read
  • Peptidomimetics, a synthetic tool of drug discovery
    Current Opinion in Chemical Biology, Vol. In Press, Corrected Proof
    by Josef Vagner, Hongchang Qu, Victor J Hruby
    posted to rev_ref review peptides drug-design by Evangelia on 2008-05-16 10:40:38 as ***
  • KEGG: kyoto encyclopedia of genes and genomes.
    Nucleic Acids Res, Vol. 28, No. 1. (1 January 2000), pp. 27-30.
    by M Kanehisa, S Goto
    posted to rev_ref pathways database by Evangelia on 2008-05-14 12:15:10 as ** along with 10 people natstreet grottenolm dquest j3xucite fisherp koerner ruvido noby naegele katerinakal
  • From genomics to chemical genomics: new developments in KEGG.
    Nucleic Acids Res., Vol. 34, No. Database issue. (1 January 2006), pp. D354-D357.
    by M Kanehisa, S Goto, M Hattori, KF Aoki-Kinoshita, M Itoh, S Kawashima, T Katayama, M Araki, M Hirakawa
    edited by 2006
    posted to rev_ref pathways database by Evangelia on 2008-05-14 12:14:12 as **
  • KEGG for linking genomes to life and the environment
    Nucleic Acids Research, Vol. 36, No. Database issue. (2008), pp. D480-D484.
    by Minoru Kanehisa, Michihiro Araki, Susumu Goto, Masahiro Hattori, Mika Hirakawa, Masumi Itoh, Toshiaki Katayama, Shuichi Kawashima, Shujiro Okuda, Toshiaki Tokimatsu, Yoshihiro Yamanishi
    posted to rev_ref pathways database by Evangelia on 2008-05-14 12:11:58 as **
  • Proteomic Screen Finds pSer/pThr-Binding Domain Localizing Plk1 to Mitotic Substrates
    Science, Vol. 299, No. 5610. (21 February 2003), pp. 1228-1231.
    by Andrew E Elia, Lewis C Cantley, Michael B Yaffe
    posted to rev_ref phospho_peptides peptides by Evangelia on 2008-05-13 09:44:57 as **
  • Ensembl 2005
    Nucleic Acids Research, Vol. 33, No. Database Issue. (2005), pp. D447-D453.
    by Hubbard, T Cox, F Cunningham, V Curwen, T Cutts, T Down, R Durbin, XM Fernandez-Suarez, J Gilbert, M Hammond, J Herrero, H Hotz, K Howe, V Iyer, K Jekosch, A Kahari, A Kasprzyk, D Keefe, S Keenan, F Kokocinsci, D London, I Longden, G Mcvicker, C Melsopp, P Meidl, S Potter, G Proctor, Rae, M Schuster, S Searle, J Severin, G Slater, D Smedley, J Smith, W Spooner, A Stabenau, J Stalker, R Storey, S Trevanion, A Ureta-Vidal, J Vogel, S White, C Woodwark, E Birney
    posted to rev_ref database by Evangelia on 2008-05-13 08:48:19 as *
  • Identification and Rational Design of Novel Antimicrobial Peptides for Plant Protection.
    Annu Rev Phytopathol. (25 April 2008)
    by JF Marcos, A Muñoz, E Pérez-Payá, S Misra, B López-García
    posted to rev_ref peptides by Evangelia on 2008-05-12 15:38:24 as **
  • Small molecule modulation of p75 neurotrophin receptor functions.
    CNS Neurol Disord Drug Targets., Vol. 7, No. 1. (February 2008), pp. 63-70.
    by FM Longo, Massa
    posted to rev_ref peptides chemical_peptide by Evangelia on 2008-05-12 15:32:30 as *
  • High-Throughput Screen for Small Molecule Inhibitors of Mint1-PDZ Domains
    ASSAY and Drug Development Technologies, Vol. 5, No. 6. (2007), pp. 769-784.
    by Xuesong Chen, Jamie C Longgood, Carolyn Michnoff, Shuguang Wei, Doug E Frantz, Llya Bezprozvanny
    posted to rev_ref peptides chemical_peptide by Evangelia on 2008-05-12 15:26:08 as *
  • A curated compendium of phosphorylation motifs
    Nature Biotechnology, Vol. 25, No. 3., pp. 285-286.
    by Ramars Amanchy, Balamurugan Periaswamy, Suresh Mathivanan, Raghunath Reddy, Sudhir G Tattikota, Akhilesh Pandey
    posted to rev_ref phospho_peptides peptides database by Evangelia on 2008-05-12 14:59:36 as ** along with 3 people neils cjeans alwinpremanand
  • ASPD (Artificially Selected Proteins/Peptides Database): a database of proteins and peptides evolved in vitro
    Nucl. Acids Res., Vol. 30, No. 1. (1 January 2002), pp. 200-202.
    by Vadim P Valuev, Dmitry A Afonnikov, Mikhail P Ponomarenko, Luciano Milanesi, Nikolay A Kolchanov
    posted to rev_ref peptides database by Evangelia on 2008-05-12 14:50:13 as read
  • APD: the Antimicrobial Peptide Database
    Nucleic Acids Research, Vol. 32 (2004), pp. D590-D592.
    by Zhe Wang, Guangshun Wang
    posted to rev_ref peptides database by Evangelia on 2008-05-12 14:49:05 as read
  • A human protein-protein interaction network: a resource for annotating the proteome.
    Cell, Vol. 122, No. 6. (23 September 2005), pp. 957-968.
    by U Stelzl, U Worm, M Lalowski, C Haenig, FH Brembeck, H Goehler, M Stroedicke, M Zenkner, A Schoenherr, S Koeppen, J Timm, S Mintzlaff, C Abraham, N Bock, S Kietzmann, A Goedde, E Toksöz, A Droege, S Krobitsch, B Korn, W Birchmeier, H Lehrach, EE Wanker
    posted to rev_ref protein-interaction-networks protein by Evangelia on 2008-05-12 14:39:13 as read along with 9 people biozhang2001 dragonrez kuhn textoris Schmidtc maryee eukfn pattisyang antonkratz
  • SMART, a simple modular architecture research tool: Identification of signaling domains
    Proceedings of the National Academy of Sciences, Vol. 95, No. 11. (26 May 1998), pp. 5857-5864.
    by Jorg Schultz, Frank Milpetz, Peer Bork, Chris P Ponting
    posted to rev_ref domain by Evangelia on 2008-05-12 14:29:33 as read
  • SLiMFinder: A Probabilistic Method for Identifying Over-Represented, Convergently Evolved, Short Linear Motifs in Proteins
    PLoS ONE, Vol. 3, No. 2. (3 October 2007), e967.
    by RJ Edwards, NE Davey, Shields
    posted to rev_ref peptides motifs by Evangelia on 2008-05-12 14:17:34 as read
  • Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3635-3641.
    by JC Obenauer, LC Cantley, MB Yaffe
    posted to rev_ref phospho_peptides peptides by Evangelia on 2008-05-12 14:13:27 as ** along with 2 people neils mloewer
  • Insights into COPII Coat Nucleation from the Structure of Sec23-Sar1 Complexed with the Active Fragment of Sec31
    Developmental Cell, Vol. 13, No. 5. (6 November 2007), pp. 635-645.
    by Xiping Bi, Joseph D Mancias, Jonathan Goldberg
    posted to rev_ref peptides example by Evangelia on 2008-05-12 14:10:26 as read
  • The 20 years of PROSITE.
    Nucleic Acids Res, Vol. 36, No. Database issue. (January 2008)
    by N Hulo, A Bairoch, V Bulliard, L Cerutti, BA Cuche, E de Castro, C Lachaize, PS Langendijk-Genevaux, CJ Sigrist
    posted to rev_ref peptides database by Evangelia on 2008-05-12 14:05:29 as ** along with 2 people dullhunk hplatero
  • Minimotif Miner: a tool for investigating protein function
    Nature Methods, Vol. 3, No. 3. (17 February 2006), pp. 175-177.
    by Sudha Balla, Vishal Thapar, Snigdha Verma, Thaibinh Luong, Tanaz Faghri, Chun-Hsi Huang, Sanguthevar Rajasekaran, Jacob, Jessica H Shinn, William A Mohler, Mark W Maciejewski, Michael R Gryk, Bryan Piccirillo, Stanley R Schiller, Martin R Schiller
    posted to rev_ref peptide motifs by Evangelia on 2008-05-12 13:59:44 as ** along with 2 people and 1 group okarsligil j3xucite Bioinformatics
  • Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins.
    BMC Bioinformatics, Vol. 5 (22 June 2004)
    by F Diella, S Cameron, C Gemünd, R Linding, A Via, B Kuster, T Sicheritz-Pontén, N Blom, TJ Gibson
    posted to rev_ref phospho_peptides peptides database by Evangelia on 2008-05-12 13:58:22 as read along with 2 people chad_davis renatomilani
  • Small-molecule MDM2 antagonists reveal aberrant p53 signaling in cancer: implications for therapy.
    Proc Natl Acad Sci U S A, Vol. 103, No. 6. (7 February 2006), pp. 1888-1893.
    by C Tovar, J Rosinski, Z Filipovic, B Higgins, K Kolinsky, H Hilton, X Zhao, BT Vu, W Qing, K Packman, O Myklebost, DC Heimbrook, LT Vassilev
    posted to rev_ref peptides chemical_peptide by Evangelia on 2008-05-12 13:49:57 as ** along with 2 people yeastyboy sbiring
  • In vivo activation of the p53 pathway by small-molecule antagonists of MDM2.
    Science, Vol. 303, No. 5659. (6 February 2004), pp. 844-848.
    by LT Vassilev, BT Vu, B Graves, D Carvajal, F Podlaski, Z Filipovic, N Kong, U Kammlott, C Lukacs, C Klein, N Fotouhi, EA Liu
    posted to rev_ref peptides p53 by Evangelia on 2008-05-12 13:48:49 as ** along with 1 person sbiring
  • Enfuvirtide: the first therapy to inhibit the entry of HIV-1 into host CD4 lymphocytes
    Nat Rev Drug Discov, Vol. 3, No. 3. (March 2004), pp. 215-225.
    by Tom Matthews, Miklos Salgo, Michael Greenberg, Jain Chung, Ralph Demasi, Dani Bolognesi
    posted to rev_ref peptides drug-design by Evangelia on 2008-05-12 12:01:45 as **
  • Inhibition of the EGF receptor by binding of MIG6 to an activating kinase domain interface
    Nature, Vol. 450, No. 7170., pp. 741-744.
    by Xuewu Zhang, Kerry A Pickin, Ron Bose, Natalia Jura, Philip A Cole, John Kuriyan
    posted to rev_ref peptides kinases domain by Evangelia on 2008-05-12 10:59:35 as ***
  • Podophyllotoxin directly binds a hinge domain in E2 of HPV and inhibits an E2/E7 interaction in vitro
    Bioorganic & Medicinal Chemistry, Vol. In Press, Corrected Proof
    by Takeki Saitoh, Kouji Kuramochi, Takahiko Imai, Kei-Ichi Takata, Masahide Takehara, Susumu Kobayashi, Kengo Sakaguchi, Fumio Sugawara
    posted to rev_ref peptides hpv chemical_peptide application by Evangelia on 2008-05-12 10:16:00 as ***
  • A correlated motif approach for finding short linear motifs from protein interaction networks
    BMC Bioinformatics, Vol. 7 (16 November 2006), 502.
    by Soon-Heng Tan, Willy Hugo, Wing-Kin Sung, See-Kiong Ng
    posted to rev_ref protein-interaction-networks peptides networks motifs by Evangelia on 2008-05-11 15:04:56 as ***
  • Systematic discovery of in vivo phosphorylation networks.
    Cell, Vol. 129, No. 7. (29 June 2007), pp. 1415-1426.
    by R Linding, LJ Jensen, GJ Ostheimer, MA van Vugt, C Jørgensen, IM Miron, F Diella, K Colwill, L Taylor, K Elder, P Metalnikov, V Nguyen, A Pasculescu, J Jin, JG Park, LD Samson, JR Woodgett, RB Russell, P Bork, MB Yaffe, T Pawson
    posted to rev_ref protein-interaction-networks phospho_peptides peptides networks by Evangelia on 2008-05-11 14:44:13 as read along with 14 people and 2 groups chad_davis carlk daed renatomilani jyuh skhadar julius zwang cdppublications lp2 psique robrussell snowcrash larsjuhljensen SysbioMPI-TCells Durbin group
  • PepBank - a database of peptides based on sequence text mining and public peptide data sources
    BMC Bioinformatics, Vol. 8 (01 August 2007), 280.
    by Timur Shtatland, Daniel Guettler, Misha Kossodo, Misha Pivovarov, Ralph Weissleder
    posted to rev_ref peptides database by Evangelia on 2008-05-11 13:00:23 as *** along with 1 person jyuh
  • Understanding eukaryotic linear motifs and their role in cell signaling and regulation
    Frontiers in Bioscience, Vol. 13 (1 May 2008), pp. 6580-6603.
    by Francesca Diella, Niall Haslam, Claudia Chica, Aidan Budd, Sushama Michael, Nigel P Brown, Gilles Trave, Toby J Gibson
    posted to signaling rev_ref review peptides motifs by Evangelia on 2008-05-10 08:58:03 as read
  • A conserved motif in Argonaute-interacting proteins mediates functional interactions through the Argonaute PIWI domain
    Nature Structural & Molecular Biology, Vol. 14, No. 10. (23 September 2007), pp. 897-903.
    by Susanne Till, Erwan Lejeune, Rolf Thermann, Miriam Bortfeld, Michael Hothorn, Daniel Enderle, Constanze Heinrich, Matthias W Hentze, Andreas G Ladurner
    posted to rev_ref peptides motifs interactions ago by Evangelia on 2008-05-07 16:07:45 as *****
  • Towards a proteome-scale map of the human protein–protein interaction network
    Nature (28 September 2005)
    by Jean-François Rual, Kavitha Venkatesan, Tong Hao, Tomoko Hirozane-Kishikawa, Amélie Dricot, Ning Li, Gabriel F Berriz, Francis D Gibbons, Matija Dreze, Nono Ayivi-Guedehoussou, Niels Klitgord, Christophe Simon, Mike Boxem, Stuart Milstein, Jennifer Rosenberg, Debra S Goldberg, Lan V Zhang, Sharyl L Wong, Giovanni Franklin, Siming Li, Joanna S Albala, Janghoo Lim, Carlene Fraughton, Estelle Llamosas, Sebiha Cevik, Camille Bex, Philippe Lamesch, Robert S Sikorski, Jean Vandenhaute, Huda Y Zoghbi, Alex Smolyar, Stephanie Bosak, Reynaldo Sequerra, Lynn Doucette-Stamm, Michael E Cusick, David E Hill, Frederick P Roth, Marc Vidal
    posted to use rev_ref netwrk interaction by Evangelia on 2008-03-25 19:15:20 as *** along with 18 people and 2 groups ksiek csanford dragonrez kuhn okarsligil jfr lyongu maryee benny wnpx yoh noano gurkanbebek mbeautru eukfn grahamc lpfernandes antonkratz Bioinformatics ParkinsonLab_at_MaRS
  • A careful disorderliness in the proteome: Sites for interaction and targets for future therapies.
    FEBS Lett (16 February 2008)
    by Robert B B Russell, Toby J J Gibson
    posted to use rev_ref review disorder by Evangelia on 2008-03-19 08:32:31 as *** along with 5 people higueruelo chad_davis kluck jyuh robrussell
  • NetMHCpan, a Method for Quantitative Predictions of Peptide Binding to Any HLA-A and -B Locus Protein of Known Sequence
    PLoS ONE, No. 8. (August 2007), e796.
    by Morten Nielsen, Claus Lundegaard, Thomas Blicher, Kasper Lamberth, Mikkel Harndahl, Sune Justesen, Gustav Røder, Bjoern Peters, Alessandro Sette, Ole Lund, Søren Buus
    posted to rev_ref prediction peptides mhc bioinformatics binding by Evangelia on 2007-10-09 15:23:53 as ***
  • Protein-protein interaction through [beta]-strand addition
    Trends in Biochemical Sciences, Vol. 31, No. 8. (August 2006), pp. 436-444.
    by Han Remaut, Gabriel Waksman
    posted to rev_ref protein-protein peptides interaction beta-augmentation by Evangelia on 2007-10-01 18:50:55 as read
  • DILIMOT: discovery of linear motifs in proteins.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by V Neduva, RB Russell
    posted to rev_ref protein prediction peptides motifs linear by Evangelia on 2007-10-01 18:43:23 as read
  • Peptides mediating interaction networks: new leads at last.
    Curr Opin Biotechnol, Vol. 17, No. 5. (October 2006), pp. 465-471.
    by V Neduva, RB Russell
    posted to rev_ref protein peptides networks interaction binding by Evangelia on 2007-10-01 18:38:24 as read along with 1 person chad_davis
  • A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules.
    Science, Vol. 295, No. 5553. (11 January 2002), pp. 321-324.
    by AH Tong, B Drees, G Nardelli, GD Bader, B Brannetti, L Castagnoli, M Evangelista, S Ferracuti, B Nelson, S Paoluzi, M Quondam, A Zucconi, CW Hogue, S Fields, C Boone, G Cesareni
    posted to y2h rev_ref prediction peptides pathways networks experimental domains computational by Evangelia on 2007-10-01 18:31:35 as read along with 4 people carlk chad_davis balajis roys
  • DOMINO: a database of domain-peptide interactions.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by A Ceol, A Chatr-aryamontri, E Santonico, R Sacco, L Castagnoli, G Cesareni
    posted to rev_ref peptides interaction domains database binding by Evangelia on 2007-10-01 18:30:20 as read
  • ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3625-3630.
    by P Puntervoll, R Linding, C Gemünd, S Chabanis-Davidson, M Mattingsdal, S Cameron, DM Martin, G Ausiello, B Brannetti, A Costantini, F Ferrè, V Maselli, A Via, G Cesareni, F Diella, G Superti-Furga, L Wyrwicz, C Ramu, C McGuigan, R Gudavalli, I Letunic, P Bork, L Rychlewski, B Küster, M Helmer-Citterich, WN Hunter, R Aasland, TJ Gibson
    posted to rev_ref protein prediction peptides motifs linear database by Evangelia on 2007-10-01 18:28:15 as read along with 1 person chad_davis
  • Bioinformatic discovery of novel bioactive peptides
    Nat Chem Biol, Vol. 3, No. 2. (February 2007), pp. 108-112.
    by Richard J Edwards, Niamh Moran, Marc Devocelle, Aoife Kiernan, Gerardene Meade, William Signac, Martina Foy, Stephen D Park, Eimear Dunne, Dermot Kenny, Denis C Shields
    posted to rev_ref prediction peptides interaction computational bioinformatics binding by Evangelia on 2007-10-01 18:26:47 as read along with 1 person zwang
  • SLiMDisc: short, linear motif discovery, correcting for common evolutionary descent.
    Nucleic Acids Res, Vol. 34, No. 12. (2006), pp. 3546-3554.
    by NE Davey, DC Shields, RJ Edwards
    posted to rev_ref prediction peptides motifs linear conservation by Evangelia on 2007-10-01 18:23:27 as read
  • SH3-SPOT: an algorithm to predict preferred ligands to different members of the SH3 gene family
    Journal of Molecular Biology, Vol. 298, No. 2. (28 April 2000), pp. 313-328.
    by Barbara Brannetti, Allegra Via, Gianluca Cestra, Gianni Cesareni, Manuela H Citterich
    posted to structure specificity sh3 rev_ref prediction motifs domains computational complexes bioinformatics algorithm by Evangelia on 2007-10-01 17:58:07 as read along with 2 people carlescorbi biehl
  • Proline-Rich Regions in Transcriptional Complexes: Heading in Many Directions
    Sci. STKE, Vol. 2007, No. 369. (16 January 2007), pe1.
    by Victor Neduva, Robert B Russell
    posted to signaling rev_ref proline-rich pathways motifs linear interaction biology by Evangelia on 2007-10-01 17:26:42 as read
  • Screening for peptide drugs from the natural repertoire of biodiverse protein folds
    Nature Biotechnology, Vol. 24, No. 2. (07 February 2006), pp. 177-183.
    by Paul M Watt
    posted to structure rev_ref peptides interaction drug-design domains by Evangelia on 2007-10-01 17:02:54 as read along with 1 person and 1 group okarsligil Bioinformatics
  • INTRINSICALLY UNSTRUCTURED PROTEINS AND THEIR FUNCTIONS
    Nat Rev Mol Cell Biol, Vol. 6, No. 3. (March 2005), pp. 197-208.
    by Jane H Dyson, Peter E Wright
    posted to use structure rev_ref review protein domains disorder by Evangelia on 2007-10-01 15:13:05 as **** along with 2 people cactus paulschlesinger
  • Signaling through scaffold, anchoring, and adaptor proteins.
    Science, Vol. 278, No. 5346. (19 December 1997), pp. 2075-2080.
    by T Pawson, JD Scott
    posted to signaling rev_ref peptides pathways motifs linear interaction domains docking by Evangelia on 2007-10-01 13:03:51 as ** along with 1 person and 1 group pdelosri EPFL_SB_ITP_LBS
  • Systematic Discovery of New Recognition Peptides Mediating Protein Interaction Networks.
    PLoS Biol, Vol. 3, No. 12. (15 November 2005)
    by Victor Neduva, Rune Linding, Isabelle Su-Angrand, Alexander Stark, Federico de D Masi, Toby J J Gibson, Joe Lewis, Luis Serrano, Robert B B Russell
    posted to rev_ref prediction peptides motifs computational biology bioinformatics by Evangelia on 2007-10-01 12:31:24 as read along with 10 people and 2 groups chad_davis rklancer okarsligil bicko Ayest xwbcn drastic ezotenko grahamc oelemento Bioinformatics ParkinsonLab_at_MaRS
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