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Ema library [273 articles]

最近 Ema さんのライブラリ .
  • Investigating selection on viruses: a statistical alignment approach
    BMC Bioinformatics, Vol. 9 (10 July 2008), 304.
    by Saskia de Groot, Thomas Mailund, Gerton Lunter, Jotun Hein
    posted to no-tag by Ema on 2008-07-21 22:28:36 as **
  • The Ascent of the Abundant: How Mutational Networks Constrain Evolution
    PLoS Comput Biol, Vol. 4, No. 7. (18 July 2008), e1000110.
    by Matthew C Cowperthwaite, Evan P Economo, William R Harcombe, Eric L Miller, Lauren A Meyers
    posted to no-tag by Ema on 2008-07-19 11:33:37 as ** along with 3 people zwang friendpine djkt
  • Memory Switches in Chemical Reaction Space
    PLoS Comput Biol, Vol. 4, No. 7. (18 July 2008), e1000122.
    by Naren Ramakrishnan, Upinder S Bhalla
    posted to no-tag by Ema on 2008-07-19 11:33:24 as **
  • Dynamics of Genome Rearrangement in Bacterial Populations
    PLoS Genet, Vol. 4, No. 7. (18 July 2008), e1000128.
    by Aaron E Darling, István Miklós, Mark A Ragan
    posted to no-tag by Ema on 2008-07-19 11:32:49 as ** along with 2 people jjray djkt
  • RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
    Genome Res. (11 June 2008), gr.079558.108.
    by John Marioni, Cristopher Mason, Shrikant Mane, Matthew Stephens, Yoav Gilad
    posted to no-tag by Ema on 2008-07-18 14:20:02 as ** along with 11 people and 1 group jyuh caseybrown vmarshal lusk fpattyn ela503 semrich balicea vega giovanni stajich Berkeley Mycology
  • Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation.
    Nature reviews. Genetics (1 July 2008)
    by Luis López-Maury, Samuel Marguerat, Jürg Bähler
    posted to no-tag by Ema on 2008-07-18 14:19:24 as ** along with 2 people jjray bootsy
  • A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome
    Science (3 July 2008), 1160342.
    by Marc Sultan, Marcel H Schulz, Hugues Richard, Alon Magen, Andreas Klingenhoff, Matthias Scherf, Martin Seifert, Tatjana Borodina, Aleksey Soldatov, Dmitri Parkhomchuk, Dominic Schmidt, Sean O'Keeffe, Stefan Haas, Martin Vingron, Hans Lehrach, Marie-Laure Yaspo
    posted to no-tag by Ema on 2008-07-18 14:18:29 as ** along with 7 people kjglennie balicea GeeSharpMinor dh0000 caseybrown reyez oelemento
  • Genome-wide transcription and the implications for genomic organization.
    Nat Rev Genet (8 May 2007)
    by Philipp Kapranov, Aarron T T Willingham, Thomas R R Gingeras
    posted to no-tag by Ema on 2008-07-18 14:18:03 as ** along with 15 people and 5 groups inesdesantiago GeeSharpMinor maximilianh jyuh balicea xico dchughes kengg sebastien_vigneau zwang ajgentles asddd hanansh antonkratz vietanh0 Bioinformatics WetBiology G4ID Plantandetc Genetics-of-Gambling
  • Energetics of the protein-DNA-water interaction
    BMC Structural Biology, Vol. 7 (10 January 2007), 4.
    by Francesca Spyrakis, Pietro Cozzini, Chiara Bertoli, Anna Marabotti, Glen E Kellogg, Andrea Mozzarelli
    posted to no-tag by Ema on 2008-07-14 18:05:54 as ** along with 3 people jjray aalibes medic0747
  • The Generation of Promoter-Mediated Transcriptional Noise in Bacteria
    PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000109.
    by Namiko Mitarai, Ian B Dodd, Michael T Crooks, Kim Sneppen
    posted to no-tag by Ema on 2008-07-12 00:05:33 as ** along with 2 people jjray waszak
  • Evolution of Evolvability in Gene Regulatory Networks
    PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000112.
    by Anton Crombach, Paulien Hogeweg
    posted to no-tag by Ema on 2008-07-12 00:04:31 as ** along with 6 people and 1 group erel10 djkt dquest Stew dlobo bootsy GEB
  • Probing the Extent of Randomness in Protein Interaction Networks
    PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000114.
    by Joseph Ivanic, Anders Wallqvist, Jaques Reifman
    posted to no-tag by Ema on 2008-07-12 00:04:28 as **
  • Unraveling Protein Networks with Power Graph Analysis
    PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000108.
    by Loïc Royer, Matthias Reimann, Bill Andreopoulos, Michael Schroeder
    posted to no-tag by Ema on 2008-07-12 00:04:09 as ** along with 14 people and 1 group lptolik MatthiasReimann jmuhlich AbnerCYH royerloic tmmurali stajich chad_davis renatomilani askrajiv Borelli nuin reyez kengg Berkeley Mycology
  • [duplicate] Local Function Conservation in Sequence and Structure Space
    PLoS Comput Biol, Vol. 4, No. 7. (4 July 2008), e1000105.
    by Nils Weinhold, Oliver Sander, Francisco S Domingues, Thomas Lengauer, Ingolf Sommer
    posted to no-tag by Ema on 2008-07-07 23:26:46 as **
  • Local Function Conservation in Sequence and Structure Space
    PLoS Comput Biol, Vol. 4, No. 7. (4 July 2008), e1000105.
    by Nils Weinhold, Oliver Sander, Francisco S Domingues, Thomas Lengauer, Ingolf Sommer
    posted to no-tag by Ema on 2008-07-07 23:13:32 as ** along with 1 person cabbagesofdoom
  • Quantitative Predictions of Peptide Binding to Any HLA-DR Molecule of Known Sequence: NetMHCIIpan
    PLoS Comput Biol, Vol. 4, No. 7. (4 July 2008), e1000107.
    by Morten Nielsen, Claus Lundegaard, Thomas Blicher, Bjoern Peters, Alessandro Sette, Sune Justesen, Søren Buus, Ole Lund
    posted to no-tag by Ema on 2008-07-07 23:13:03 as **
  • Colored extrinsic fluctuations and stochastic gene expression
    Mol Syst Biol, Vol. 4 (6 May 2008)
    by Vahid Shahrezaei, Julien F Ollivier, Peter S Swain
    posted to no-tag by Ema on 2008-07-02 17:05:44 as ** along with 2 people margaritis jjray
  • Recursive construction of perfect DNA molecules from imperfect oligonucleotides.
    Molecular systems biology, Vol. 4 (2008)
    by G Linshiz, TB Yehezkel, S Kaplan, I Gronau, S Ravid, R Adar, E Shapiro
    posted to no-tag by Ema on 2008-07-02 17:05:29 as ** along with 2 people and 2 groups austin dbikard SynBioSys Centre de Recherches Interdisciplinaires
  • Recurrent design patterns in the feedback regulation of the mammalian signalling network
    Mol Syst Biol, Vol. 4 (6 May 2008)
    by Stefan Legewie, Hanspeter Herzel, Hans V Westerhoff, Nils Bluthgen
    posted to no-tag by Ema on 2008-07-02 17:05:18 as ** along with 2 people bootsy roys
  • Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis
    Mol Syst Biol, Vol. 4 (6 May 2008)
    by Naoyuki Sugiyama, Hirofumi Nakagami, Keiichi Mochida, Arsalan Daudi, Masaru Tomita, Ken Shirasu, Yasushi Ishihama
    posted to no-tag by Ema on 2008-07-02 17:05:03 as ** along with 3 people kengg zwang neils
  • Intronic Alternative Splicing Regulators Identified by Comparative Genomics in Nematodes
    PLoS Comput Biol, Vol. 2, No. 7. (14 July 2006), e86.
    by Jennifer L Kabat, Sergio Barberan-Soler, Paul Mckenna, Hiram Clawson, Tracy Farrer, Alan M Zahler
    posted to no-tag by Ema on 2008-06-30 14:44:19 as **
  • Transcription in Mycoplasma pneumoniae.
    Nucleic acids research, Vol. 28, No. 22. (15 November 2000), pp. 4488-4496.
    by J Weiner, R Herrmann, GF Browning
    posted to no-tag by Ema on 2008-06-30 11:24:12 as ** along with 1 person shana
  • Regulation of Signal Duration and the Statistical Dynamics of Kinase Activation by Scaffold Proteins
    PLoS Comput Biol, Vol. 4, No. 6. (27 June 2008), e1000099.
    by Jason W Locasale, Arup K Chakraborty
    posted to no-tag by Ema on 2008-06-29 12:19:39 as ** along with 1 person Schmidtc
  • Why are
    by Vladimir N Uversky, Joel R Gillespie, Anthony L Fink
    posted to no-tag by Ema on 2008-06-24 18:46:39 as ** along with 2 people taianah Evangelia
  • Protein folding: Chaperone embrace
    Nature Reviews Molecular Cell Biology, Vol. 9, No. 7. (18 June 2008), pp. 497-497.
    by Francesca Cesari
    posted to tob by Ema on 2008-06-24 18:22:44 as **
  • Alternative splicing and genome complexity.
    Nat Genet, Vol. 30, No. 1. (January 2002), pp. 29-30.
    by D Brett, H Pospisil, J Valcárcel, J Reich, P Bork
    posted to no-tag by Ema on 2008-06-24 18:21:52 as ** along with 3 people and 1 group kaspermunch PunkRock antonkratz Bioinformatics
  • Global variation in copy number in the human genome
    Nature, Vol. 444, No. 7118. (23 November 2006), pp. 444-454.
    by Richard Redon, Shumpei Ishikawa, Karen R Fitch, Lars Feuk, George H Perry, Daniel T Andrews, Heike Fiegler, Michael H Shapero, Andrew R Carson, Wenwei Chen, Eun K Cho, Stephanie Dallaire, Jennifer L Freeman, Juan R Gonzalez, Monica Gratacos, Jing Huang, Dimitrios Kalaitzopoulos, Daisuke Komura, Jeffrey R Macdonald, Christian R Marshall, Rui Mei, Lyndal Montgomery, Kunihiro Nishimura, Kohji Okamura, Fan Shen, Martin J Somerville, Joelle Tchinda, Armand Valsesia, Cara Woodwark, Fengtang Yang, Junjun Zhang, Tatiana Zerjal, Jane Zhang, Lluis Armengol, Donald F Conrad, Xavier Estivill, Chris Tyler-Smith, Nigel P Carter, Hiroyuki Aburatani, Charles Lee, Keith W Jones, Stephen W Scherer, Matthew E Hurles
    posted to no-tag by Ema on 2008-06-24 18:21:34 as ** along with 25 people and 6 groups pradiptaray daed srp33 bpb jfr balajis dpollard mtagaya adepace aswin rdiaz qfwills ealloza vplagnol giovanni jeremymiller frohike vpschulz raiyar ramensky ccr azazello dbgrant colinveal xingxu Bioinformatics EisenLab BioinfoCIPF GeschwindLab steinmetzlab MBLAB
  • Large-Scale Copy Number Polymorphism in the Human Genome
    Science, Vol. 305, No. 5683. (23 July 2004), pp. 525-528.
    by Jonathan Sebat, B Lakshmi, Jennifer Troge, Joan Alexander, Janet Young, Par Lundin, Susanne Maner, Hillary Massa, Megan Walker, Maoyen Chi, Nicholas Navin, Robert Lucito, John Healy, James Hicks, Kenny Ye, Andrew Reiner, Conrad C Gilliam, Barbara Trask, Nick Patterson, Anders Zetterberg, Michael Wigler
    posted to no-tag by Ema on 2008-06-24 18:20:48 as ** along with 7 people and 2 groups mercaptan pcahan1 mrkrause rdiaz jeremymiller massivemayhem jpdemuth Bioinformatics GeschwindLab
  • Detection of large-scale variation in the human genome.
    Nat Genet, Vol. 36, No. 9. (September 2004), pp. 949-951.
    by AJ Iafrate, L Feuk, MN Rivera, ML Listewnik, PK Donahoe, Y Qi, SW Scherer, C Lee
    posted to no-tag by Ema on 2008-06-24 18:18:37 as ** along with 4 people and 2 groups pcahan1 dchughes ealloza bioguru2000 G4ID Genetics-of-Gambling
  • A Coarse-Grained Biophysical Model of E. coli and Its Application to Perturbation of the rRNA Operon Copy Number
    PLoS Comput Biol, Vol. 4, No. 5. (2 May 2008), e1000038.
    by Arbel D Tadmor, Tsvi Tlusty
    posted to no-tag by Ema on 2008-06-23 17:29:54 as **
  • Discovering sequence motifs with arbitrary insertions and deletions.
    PLoS computational biology, Vol. 4, No. 4. (April 2008)
    by MC Frith, NF Saunders, B Kobe, TL Bailey
    posted to no-tag by Ema on 2008-06-23 17:29:42 as ** along with 5 people dquest Stew gjuggler neils cabbagesofdoom
  • The Energy Landscapes of Repeat-Containing Proteins: Topology, Cooperativity, and the Folding Funnels of One-Dimensional Architectures
    PLoS Comput Biol, Vol. 4, No. 5. (16 May 2008), e1000070.
    by Diego U Ferreiro, Aleksandra M Walczak, Elizabeth A Komives, Peter G Wolynes
    posted to no-tag by Ema on 2008-06-23 17:29:24 as **
  • Sequence Similarity Network Reveals Common Ancestry of Multidomain Proteins
    PLoS Comput Biol, Vol. 4, No. 5. (16 May 2008), e1000063.
    by Nan Song, Jacob M Joseph, George B Davis, Dannie Durand
    posted to no-tag by Ema on 2008-06-23 17:29:10 as ** along with 2 people zwang tmmurali
  • Dynamic analysis of integrated signaling, metabolic, and regulatory networks.
    PLoS computational biology, Vol. 4, No. 5. (May 2008)
    by J Min Lee, EP Gianchandani, JA Eddy, JA Papin
    posted to no-tag by Ema on 2008-06-23 17:28:57 as ** along with 3 people roys lymxz bootsy
  • Uncovering Interactions in the Frequency Domain
    PLoS Comput Biol, Vol. 4, No. 5. (30 May 2008), e1000087.
    by Shuixia Guo, Jianhua Wu, Mingzhou Ding, Jianfeng Feng
    posted to no-tag by Ema on 2008-06-23 16:55:53 as ** along with 2 people j-ito Borelli
  • A Probabilistic Model of Local Sequence Alignment That Simplifies Statistical Significance Estimation
    PLoS Comput Biol, Vol. 4, No. 5. (30 May 2008), e1000069.
    by Sean R Eddy
    posted to no-tag by Ema on 2008-06-23 16:55:40 as **
  • CSMET: Comparative Genomic Motif Detection via Multi-Resolution Phylogenetic Shadowing
    PLoS Comput Biol, Vol. 4, No. 6. (6 June 2008), e1000090.
    by Pradipta Ray, Suyash Shringarpure, Mladen Kolar, Eric P Xing
    posted to no-tag by Ema on 2008-06-23 16:55:14 as ** along with 3 people and 1 group Stew cisevol djkt cis-regulatory-evolution
  • Conformational proofreading: the impact of conformational changes on the specificity of molecular recognition.
    PLoS ONE, Vol. 2, No. 5. (2007)
    by Y Savir, T Tlusty
    posted to no-tag by Ema on 2008-06-20 14:41:53 as ** along with 2 people nigham jjray
  • Parallel techniques for physically based simulation on multi-core processor architectures
    Computers & Graphics, Vol. 32, No. 1. (February 2008), pp. 25-40.
    by Bernhard Thomaszewski, Simon Pabst, Wolfgang Blochinger
    posted to no-tag by Ema on 2008-06-16 09:49:40 as ** along with 2 people pescuma ignacio
  • Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios.
    Science, Vol. 302, No. 5652. (12 December 2003), pp. 1960-1963.
    by AG Clark, S Glanowski, R Nielsen, PD Thomas, A Kejariwal, MA Todd, DM Tanenbaum, D Civello, F Lu, B Murphy, S Ferriera, G Wang, X Zheng, TJ White, JJ Sninsky, MD Adams, M Cargill
    posted to tree_alignment by Ema on 2008-06-14 15:24:08 as ** along with 4 people and 1 group gjuggler ejeffery hdopazo djkt BioinfoCIPF
  • Comparative conservation analysis of the human mitotic phosphoproteome
    Bioinformatics (20 April 2008), btn197.
    by Rainer Malik, Erich A Nigg, Roman Korner
    posted to no-tag by Ema on 2008-06-13 14:04:37 as ** along with 2 people niallhaslam renatomilani
  • Positive selection drives a correlation between nonsynonymous/ synonymous divergence and functional divergence.
    Bioinformatics (Oxford, England) (28 April 2008)
    by Jacob A A Tennessen
    posted to no-tag by Ema on 2008-06-13 14:04:30 as ** along with 3 people APRegier djkt gjuggler
  • Distinguishing protein-coding and noncoding genes in the human genome
    Proceedings of the National Academy of Sciences (26 November 2007), 0709013104.
    by Michele Clamp, Ben Fry, Mike Kamal, Xiaohui Xie, James Cuff, Michael F Lin, Manolis Kellis, Kerstin Lindblad-Toh, Eric S Lander
    posted to no-tag by Ema on 2008-06-12 12:27:54 as ** along with 15 people and 3 groups tmmurali rvosa balicea sebastien_vigneau giovanni neils stajich cjeans cabbagezs maximilianh oelemento gjuggler slroberd renatomilani gracio EisenLab FAB-lab Berkeley Mycology
  • The MARTINI Coarse-Grained Force Field: Extension to Proteins
    J. Chem. Theory Comput. (16 April 2008)
    by Luca Monticelli, Senthil K Kandasamy, Xavier Periole, Ronald G Larson, Peter D Tieleman, Siewert-Jan Marrink
    posted to no-tag by Ema on 2008-06-06 10:05:38 as ** along with 5 people and 1 group softsimu aqeel DanielParton sobolevnrm middledomain baker-group
  • Comparative genome assembly.
    Brief Bioinform, Vol. 5, No. 3. (September 2004), pp. 237-248.
    by M Pop, A Phillippy, AL Delcher, SL Salzberg
    posted to no-tag by Ema on 2008-06-06 10:04:54 as ** along with 7 people and 2 groups Neeperando mariakmejia treangen azazello wenhan urgi tpreeprem MBLAB gatech-compgenomics
  • PLoS Computational Biology: An Introduction to Bioinformatics for Glycomics Research
    posted to no-tag by Ema on 2008-06-04 14:12:50 as **
  • PLoS Computational Biology: Uncovering Interactions in the Frequency Domain
    posted to no-tag by Ema on 2008-06-04 14:11:21 as **
  • PLoS Computational Biology: A Probabilistic Model of Local Sequence Alignment That Simplifies Statistical Significance Estimation
    posted to no-tag by Ema on 2008-06-04 14:10:46 as ** along with 3 people lp2 reyez cabbagesofdoom
  • De novo repeat classification and fragment assembly.
    Genome Res, Vol. 14, No. 9. (September 2004), pp. 1786-1796.
    by PA Pevzner, H Tang, G Tesler
    posted to repeats by Ema on 2008-05-26 13:53:42 as ** along with 11 people Neeperando brl briann operon timflutre azazello prajlondhe nedwards urgi yoanjacquemin dmc
  • PLoS Computational Biology: Quasispecies Made Simple
    posted to catastrophe by Ema on 2008-05-21 22:30:00 as **
    • 注: このページを引用する時は次のURLでどうぞ: http://www.citeulike.org/user/Ema

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