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AaronDarling recombination [58 articles]

最近 AaronDarling さんのライブラリに追加された論文の中から タグ recombination. You can also see everyone's recombination.
  • Inference of Bacterial Microevolution Using Multilocus Sequence Data
    Genetics, Vol. 175, No. 3. (1 March 2007), pp. 1251-1266.
    by Xavier Didelot, Daniel Falush
  • Recombination initiation: easy as A, B, C, D... chi?
    Curr Biol, Vol. 7, No. 12. (1 December 1997)
    by AK Eggleston, SC West
    posted to recombination by AaronDarling on 2007-01-25 06:43:59 as **
  • notes Associations between inverted repeats and the structural evolution of bacterial genomes.
    Genetics, Vol. 164, No. 4. (August 2003), pp. 1279-1289.
    by G Achaz, E Coissac, P Netter, EP Rocha
  • Role of Hfr mutants in F-plus x F-minus crosses in Escherichia coli K12.
    Nature, Vol. 185 (23 January 1960), pp. 265-266.
    by P REEVES
    posted to horizontaltransfer microbialevolution recombination by AaronDarling on 2006-07-11 08:47:40 as **
  • Pathogenicity islands and the evolution of microbes.
    Annu Rev Microbiol, Vol. 54 (2000), pp. 641-679.
    by J Hacker, JB Kaper
    posted to genomeevolution horizontaltransfer recombination by AaronDarling on 2006-07-11 08:36:35 as **
  • Prevalence and Evolution of Core Photosystem II Genes in Marine Cyanobacterial Viruses and Their Hosts.
    PLoS Biol, Vol. 4, No. 8. (4 July 2006)
    by Matthew B B Sullivan, Debbie Lindell, Jessica A A Lee, Luke R R Thompson, Joseph P P Bielawski, Sallie W W Chisholm
  • Distributional profiles of homologous open reading frames among bacterial phyla: implications for vertical and lateral transmission.
    Int J Syst Evol Microbiol, Vol. 52, No. Pt 3. (May 2002), pp. 777-787.
    by MA Ragan, RL Charlebois
  • Genome-wide detection and analysis of homologous recombination among sequenced strains of Escherichia coli
    Genome Biology, Vol. 7 (31 May 2006), R44.
    by Bob Mau, Jeremy D Glasner, Aaron E Darling, Nicole T Perna
  • Relaxed Phylogenetics and Dating with Confidence
    PLoS Biology, Vol. 4, No. 5. (1 May 2006)
    by Alexei J Drummond, Simon Y Ho, Matthew J Phillips, Andrew Rambaut
  • The relative contributions of recombination and point mutation to the diversification of bacterial clones.
    Curr Opin Microbiol, Vol. 4, No. 5. (October 2001), pp. 602-606.
    by BG Spratt, WP Hanage, EJ Feil
    posted to evolution recombination by AaronDarling on 2006-07-04 00:31:49 as **
  • Recombination and the population structures of bacterial pathogens.
    Annu Rev Microbiol, Vol. 55 (2001), pp. 561-590.
    by EJ Feil, BG Spratt
  • Clonal divergence in Escherichia coli as a result of recombination, not mutation.
    Science, Vol. 266, No. 5189. (25 November 1994), pp. 1380-1383.
    by DS Guttman, DE Dykhuizen
    posted to evolution recombination by AaronDarling on 2006-07-04 00:12:20 as **
  • Transduction, restriction and recombination patterns in Escherichia coli.
    Genetics, Vol. 139, No. 1. (January 1995), pp. 35-43.
    by M McKane, R Milkman
    posted to recombination by AaronDarling on 2006-07-04 00:11:38 as **
  • Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ.
    Genome Biol, Vol. 4, No. 9. (2003)
    by MV Omelchenko, KS Makarova, YI Wolf, IB Rogozin, EV Koonin
  • Molecular evolution of the Escherichia coli chromosome. I. Analysis of structure and natural variation in a previously uncharacterized region between trp and tonB.
    Genetics, Vol. 120, No. 2. (October 1988), pp. 345-358.
    posted to evolution microbialevolution recombination by AaronDarling on 2006-07-04 00:06:08 as **
  • Whole-genome analysis of photosynthetic prokaryotes.
    Science, Vol. 298, No. 5598. (22 November 2002), pp. 1616-1620.
    posted to recombination by AaronDarling on 2006-07-04 00:01:16 as ** along with 1 person hpaces
  • Evaluation of methods for detecting recombination from DNA sequences: Computer simulations
    PNAS, Vol. 98, No. 24. (20 November 2001), pp. 13757-13762.
    by David Posada, Keith A Crandall
    posted to recombination by AaronDarling on 2006-07-04 00:00:41 as ** along with 1 person treangen
  • TOPAL 2.0: improved detection of mosaic sequences within multiple alignments.
    Bioinformatics, Vol. 16, No. 2. (February 2000), pp. 130-134.
    by G McGuire, F Wright
    posted to recombination by AaronDarling on 2006-07-03 23:59:51 as ** along with 1 person jmeppley
  • Detecting recombination with MCMC.
    Bioinformatics, Vol. 18 Suppl 1 (2002)
    posted to mcmc recombination by AaronDarling on 2006-07-03 23:59:12 as ** along with 2 people jmeppley treangen
  • A likelihood method for the detection of selection and recombination using nucleotide sequences.
    Mol Biol Evol, Vol. 14, No. 3. (March 1997), pp. 239-247.
    by NC Grassly, EC Holmes
    posted to recombination by AaronDarling on 2006-07-03 23:58:35 as ** along with 1 person jmeppley
  • A novel approach to detecting and measuring recombination: new insights into evolution in viruses, bacteria, and mitochondria.
    Mol Biol Evol, Vol. 18, No. 8. (August 2001), pp. 1425-1434.
    by M Worobey
    posted to recombination by AaronDarling on 2006-07-03 23:57:43 as **
  • Genetic exchange and plasmid transfers in Borrelia burgdorferi sensu stricto revealed by three-way genome comparisons and multilocus sequence typing.
    Proc Natl Acad Sci U S A, Vol. 101, No. 39. (28 September 2004), pp. 14150-14155.
    by WG Qiu, SE Schutzer, JF Bruno, O Attie, Y Xu, JJ Dunn, CM Fraser, SR Casjens, BJ Luft
    posted to recombination by AaronDarling on 2006-07-03 23:56:27 as **
  • Detecting recombination from gene trees
    Mol Biol Evol, Vol. 15, No. 5. (1 May 1998), pp. 590-599.
    by Maynard, Nh Smith
    posted to recombination by AaronDarling on 2006-07-03 23:55:36 as ** along with 4 people druvus bjorns jmeppley Xavier
  • Statistical methods of DNA sequence analysis: detection of intragenic recombination or gene conversion
    Mol Biol Evol, Vol. 2, No. 6. (1 November 1985), pp. 539-556.
    by Jc Stephens
    posted to recombination by AaronDarling on 2006-07-03 23:54:59 as ** along with 1 person jmeppley
  • Stepwise detection of recombination breakpoints in sequence alignments
    Bioinformatics, Vol. 21, No. 5. (01 March 2005), pp. 589-595.
    by Jinko Graham, Brad Mcneney, Francoise Seillier-Moiseiwitsch
    posted to recombination by AaronDarling on 2006-07-03 23:53:27 as ** along with 2 people jmeppley treangen
  • Free recombination within Helicobacter pylori.
    Proc Natl Acad Sci U S A, Vol. 95, No. 21. (13 October 1998), pp. 12619-12624.
    posted to recombination by AaronDarling on 2006-07-03 23:44:45 as ** along with 1 person bjorns
  • Interspecies recombination between the penA genes of Neisseria meningitidis and commensal Neisseria species during the emergence of penicillin resistance in N. meningitidis: natural events and laboratory simulation.
    J Bacteriol, Vol. 176, No. 2. (January 1994), pp. 333-337.
    by LD Bowler, QY Zhang, JY Riou, BG Spratt
    posted to recombination by AaronDarling on 2006-07-03 23:43:45 as **
  • Recombination in Escherichia coli and the definition of biological species.
    J Bacteriol, Vol. 173, No. 22. (November 1991), pp. 7257-7268.
    by DE Dykhuizen, L Green
  • The cobweb of life revealed by genome-scale estimates of horizontal gene transfer.
    PLoS Biol, Vol. 3, No. 10. (October 2005)
    by F Ge, LS Wang, J Kim
  • From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-Proteobacteria.
    PLoS Biol, Vol. 1, No. 1. (October 2003)
    by E Lerat, V Daubin, NA Moran
  • Prokaryotic evolution in light of gene transfer.
    Mol Biol Evol, Vol. 19, No. 12. (December 2002), pp. 2226-2238.
  • The relative contributions of recombination and mutation to the divergence of clones of Neisseria meningitidis.
    Mol Biol Evol, Vol. 16, No. 11. (November 1999), pp. 1496-1502.
    by EJ Feil, MC Maiden, M Achtman, BG Spratt
    posted to evolution recombination by AaronDarling on 2006-07-03 22:59:33 as ** along with 1 person jmeppley
  • Recombination in evolutionary genomics.
    Annu Rev Genet, Vol. 36 (2002), pp. 75-97.
    by D Posada, KA Crandall, EC Holmes
    posted to evolution nsfprop recombination by AaronDarling on 2006-04-10 20:09:07 as **
  • Natural genetic exchange between Haemophilus and Neisseria: Intergeneric transfer of chromosomal genes between major human pathogens
    PNAS, Vol. 95, No. 21. (13 October 1998), pp. 12381-12385.
    by Simon J Kroll, Kathryn E Wilks, Jayne L Farrant, Paul R Langford
  • Recombination and population structure in Escherichia coli.
    Genetics, Vol. 146, No. 3. (July 1997), pp. 745-750.
    by R Milkman
    posted to evolution nsfprop populationgenetics recombination by AaronDarling on 2006-04-10 18:44:37 as **
  • notes Detecting recombination in 4-taxa DNA sequence alignments with Bayesian hidden Markov models and Markov chain Monte Carlo.
    Mol Biol Evol, Vol. 20, No. 3. (March 2003), pp. 315-337.
    posted to evolution nsfprop recombination by AaronDarling on 2006-04-06 22:47:02 as **
  • A heuristic method to reconstruct the history of sequences subject to recombination
    Journal of Molecular Evolution, Vol. 36 (1993), pp. 396-406.
    by J Hein
    posted to evolution nsfprop recombination by AaronDarling on 2006-04-06 22:45:26 as **
  • Statistical tests for detecting gene conversion.
    Mol Biol Evol, Vol. 6, No. 5. (September 1989), pp. 526-538.
    by S Sawyer
  • Coalescents and Species Trees
    (2004), pp. 488-495.
    by Joseph Felsenstein
  • Gene trees in species trees
    Systematic Biology, No. 46. (1997), pp. 523-536.
    by WP Maddison
  • LAMARC 2.0: maximum likelihood and Bayesian estimation of population parameters.
    Bioinformatics, Vol. 22, No. 6. (15 March 2006), pp. 768-770.
    by MK Kuhner
  • Maximum likelihood estimation of recombination rates from population data.
    Genetics, Vol. 156, No. 3. (November 2000), pp. 1393-1401.
    posted to nsfprop populationgenetics recombination by AaronDarling on 2006-04-06 20:47:31 as **
  • A coalescent-based method for detecting and estimating recombination from gene sequences.
    Genetics, Vol. 160, No. 3. (March 2002), pp. 1231-1241.
  • Estimating diversifying selection and functional constraint in the presence of recombination.
    Genetics, Vol. 172, No. 3. (March 2006), pp. 1411-1425.
    by DJ Wilson, G McVean
  • Discriminating between rate heterogeneity and interspecific recombination in DNA sequence alignments with phylogenetic factorial hidden Markov models.
    Bioinformatics, Vol. 21 Suppl 2 (1 September 2005)
    posted to nsfprop phylogenetics recombination by AaronDarling on 2006-04-06 20:40:01 as **
  • notes Dual multiple change-point model leads to more accurate recombination detection.
    Bioinformatics, Vol. 21, No. 13. (1 July 2005), pp. 3034-3042.
    by VN Minin, KS Dorman, F Fang, MA Suchard
    posted to nsfprop phylogenetics recombination by AaronDarling on 2006-04-06 20:39:27 as read
  • A program for calculating and displaying compatibility matrices as an aid in determining reticulate evolution in molecular sequences.
    Comput Appl Biosci, Vol. 12, No. 4. (August 1996), pp. 291-295.
    by IB Jakobsen, S Easteal
    posted to nsfprop recombination by AaronDarling on 2006-04-06 20:38:35 as **
  • RDP2: recombination detection and analysis from sequence alignments
    Bioinformatics, Vol. 21, No. 2., 260.
  • Fast "coalescent" simulation.
    BMC Genet, Vol. 7, No. 1. (15 March 2006)
    by Paul Marjoram, Jeff D Wall
  • Inferring Phylogeny Despite Incomplete Lineage Sorting
    Systematic Biology, Vol. 55, No. 1. (February 2006), pp. 21-30.
    by Wayne Maddison, L Knowles
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