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タグ: trna [128 articles]

Recent papers classified by the tag trna.
  • Use of RNase P for efficient preparation of yeast tRNATyr transcript and its mutants.
    J Biochem (Tokyo), Vol. 139, No. 1. (January 2006), pp. 123-127.
    by J Fukunaga, M Gouda, K Umeda, S Ohno, T Yokogawa, K Nishikawa
    posted to mutation rnasep trna yeast by zwang on 2007-07-26 08:28:06 as ***
  • ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.
    Nucleic Acids Res, Vol. 32, No. 1. (2004), pp. 11-16.
    by D Laslett, B Canback
    posted to prediction trna trna-like by vwchan on 2008-06-13 20:21:40 as read along with 3 people evaf Cortel dandaman
  • Evolution of tRNA-like sequences and genome variability.
    Gene, Vol. 335 (23 June 2004), pp. 57-71.
    by FE Frenkel, MB Chaley, EV Korotkov, KG Skryabin
    posted to prediction trna trna-like by vwchan on 2006-06-09 19:31:02 as ** along with 1 group beta
  • Integration sites for genetic elements in prokaryotic tRNA and tmRNA genes: sublocation preference of integrase subfamilies.
    Nucleic Acids Res, Vol. 30, No. 4. (15 February 2002), pp. 866-875.
    by KP Williams
    posted to integrase trna by vwchan on 2006-06-20 22:23:33 as ** along with 1 group beta
  • tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.
    Nucleic Acids Res, Vol. 25, No. 5. (1 March 1997), pp. 955-964.
    by TM Lowe, SR Eddy
    posted to covariance prediction trna by vwchan on 2006-06-09 19:28:48 as read along with 7 people and 1 group ziquje evaf arcticrasta dquest djkt dandaman timflutre beta
  • Compilation of tRNA sequences and sequences of tRNA genes.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by M Sprinzl, KS Vassilenko
    posted to database trna by vwchan on 2006-06-09 20:32:46 as ** along with 1 person and 1 group condon beta
  • Impact of forced selection of tRNAs on HIV-1 replication and genome stability highlight preferences for selection of certain tRNAs.
    Virus Res (27 October 2006)
    by Na Ni, Casey D Morrow
    posted to trna by vwchan on 2006-11-03 01:05:55 as ** along with 1 group beta
  • A novel strategy for the identification of genomic islands by comparative analysis of the contents and contexts of tRNA sites in closely related bacteria.
    Nucleic Acids Res, Vol. 34, No. 1. (2006)
    by HY Ou, LL Chen, J Lonnen, RR Chaudhuri, AB Thani, R Smith, NJ Garton, J Hinton, M Pallen, MR Barer, K Rajakumar
    posted to island prediction trna by vwchan on 2006-07-24 18:05:30 as ** along with 1 group beta
  • A proline tRNA(CGG) gene encompassing the attachment site of temperate phage 16-3 is functional and convertible to suppressor tRNA.
    Mol Microbiol, Vol. 54, No. 3. (November 2004), pp. 742-754.
    by B Blaha, S Semsey, S Ferenczi, Z Csiszovszki, PP Papp, L Orosz
    posted to insertion-site phage trna by vwchan on 2006-11-03 01:08:24 as ** along with 1 group beta
  • Int-B13, an unusual site-specific recombinase of the bacteriophage P4 integrase family, is responsible for chromosomal insertion of the 105-kilobase clc element of Pseudomonas sp. Strain B13.
    J Bacteriol, Vol. 180, No. 21. (November 1998), pp. 5505-5514.
    by R Ravatn, S Studer, AJ Zehnder, JR van der Meer
    posted to insertion-site integration trna by vwchan on 2006-06-09 19:55:27 as ** along with 1 group beta
  • Phage_Finder: Automated identification and classification of prophage regions in complete bacterial genome sequences.
    Nucleic Acids Res (24 October 2006)
    by Derrick E Fouts
    posted to lateral_gene_transfer phage prediction prophage trna by vwchan on 2006-11-03 22:13:11 as ***** along with 1 group beta
  • Unusual structure of the attB site of the site-specific recombination system of Lactobacillus delbrueckii bacteriophage mv4.
    J Bacteriol, Vol. 181, No. 23. (December 1999), pp. 7385-7389.
    by F Auvray, M Coddeville, RC Ordonez, P Ritzenthaler
    posted to insertion-site trna by vwchan on 2006-11-03 01:12:14 as ** along with 1 group beta
  • Transfer RNA genes frequently serve as integration sites for prokaryotic genetic elements.
    Nucleic Acids Res, Vol. 17, No. 5. (11 March 1989), pp. 1907-1914.
    by WD Reiter, P Palm, S Yeats
    posted to insertion-site integration trna by vwchan on 2006-06-20 23:21:08 as ** along with 1 group beta
  • Aminoacyl-tRNA synthetases database
    Nucl. Acids Res., Vol. 29, No. 1. (1 January 2001), pp. 288-290.
    by Maciej Szymanski, Marzanna A Deniziak, Jan Barciszewski
    posted to aars database_issue trna by tny on 2007-04-14 15:44:35 as **
  • Cis- and trans-splicing of mRNAs mediated by tRNA sequences in eukaryotic cells.
    Proceedings of the National Academy of Sciences of the United States of America (5 May 2008)
    by Gianfranco Di Segni, Serena Gastaldi, Glauco P P Tocchini-Valentini
    posted to mrna splicing transcription trna by stajich on 2008-06-02 03:20:12 as ** along with 3 people and 1 group austin sebastien_vigneau inesdesantiago Berkeley Mycology
  • Structure of a tyrosyl-tRNA synthetase splicing factor bound to a group I intron RNA
    Nature, Vol. 451, No. 7174. (3 January 2008), pp. 94-97.
    by Paul J Paukstelis, Jui-Hui Chen, Elaine Chase, Alan M Lambowitz, Barbara L Golden
    posted to intron neurospora rna rnaworld trna by stajich on 2008-01-06 20:05:29 as ** along with 1 person and 1 group sharpton Berkeley Mycology
  • Vibrational dynamics of transfer RNAs: comparison of the free and synthetase-bound forms.
    J Mol Biol, Vol. 281, No. 5. (4 September 1998), pp. 871-884.
    by I Bahar, RL Jernigan
    posted to trna by simone on 2007-10-31 09:11:34 as ** along with 1 person aqeel
  • Preferential codon usage in prokaryotic genes: the optimal codon-anticodon interaction energy and the selective codon usage in efficiently expressed genes.
    Gene, Vol. 18, No. 3. (June 1982), pp. 199-209.
    by H Grosjean, W Fiers
    posted to codon degenerate trna usage by saunders on 2008-04-14 16:34:02 as **
  • Biosynthesis of Selenocysteine on Its tRNA in Eukaryotes
    PLoS Biology, Vol. 5, No. 1. (1 January 2007), e4.
    by Xue-Ming Xu, Bradley A Carlson, Heiko Mix, Yan Zhang, Kazima Saira, Richard S Glass, Marla J Berry, Vadim N Gladyshev, Dolph L Hatfield
    posted to eukaryote pathways rareaa trna selenocysteine by rsandie on 2007-12-11 20:08:02 as ***
  • Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach
    BMC Bioinformatics, Vol. 8 (28 June 2007), 225.
    by Masashi Fujita, Hisaaki Mihara, Susumu Goto, Nobuyoshi Esaki, Minoru Kanehisa
    posted to amino-acids codons computing trna by rsandie on 2007-07-27 16:39:50 as read along with 2 people Cortel wenhan
  • Tissue-Specific Differences in Human Transfer RNA Expression
    PLoS Genetics, Vol. 2, No. 12. (1 December 2006), e221.
    by Kimberly A Dittmar, Jeffrey M Goodenbour, Tao Pan
    posted to human microarray screen tissue-specific trna by rsandie on 2007-04-03 19:19:21 as *** along with 1 person gpalidwor
  • NMR-based identification of peptides that specifically recognize the d-arm of tRNA.
    Biochimie, Vol. 87, No. 9-10. (t 2005), pp. 885-888.
    by C Tisné, F Guillière, F Dardel
    posted to nmr trna by perrywoo on 2006-02-28 18:10:18 as **
  • Free-energy simulations and experiments reveal long-range electrostatic interactions and substrate-assisted specificity in an aminoacyl-tRNA synthetase.
    Chembiochem, Vol. 7, No. 2. (February 2006), pp. 337-344.
    by D Thompson, P Plateau, T Simonson
    posted to simulations trna by perrywoo on 2006-02-27 22:24:06 as **
  • Removing tRNA from a cell-free protein synthesis system for use in protein production.
    Nucleic Acids Symp Ser, No. 37. (1997), pp. 319-320.
    by T Kanda, K Takai, S Yokoyama, H Takaku
    posted to cell-free expression protein trna by Odi on 2006-05-02 10:45:21 as **
  • Life without RNase P
    Nature, Vol. 453, No. 7191., pp. 120-123.
    by Lennart Randau, Imke Schröder, Dieter Söll
    posted to archaea evolution nanoarcheum ribonuclease rnasep synthesis trna by neils on 2008-05-01 02:19:42 as ** along with 4 people and 2 groups kinestetika stajich zwang austin microbiology_nijmegen Berkeley Mycology
  • Divergence of selenocysteine tRNA recognition by archaeal and eukaryotic O-phosphoseryl-tRNASec kinase
    Nucl. Acids Res., Vol. 36, No. 6. (1 April 2008), pp. 1871-1880.
    by Lynn R Sherrer, Joanne M Ho, Dieter Soll
    posted to eukaryotic kinase selenocysteine trna archaea by neils on 2008-04-04 00:19:36 as **
  • The homotetrameric phosphoseryl-tRNA synthetase from Methanosarcina mazei exhibits half-of-the-sites activity.
    The Journal of biological chemistry (17 June 2008)
    by Scott I I Hauenstein, Ya-Ming M Hou, John J J Perona
    posted to activity enzymology methanosarcinaceae synthesis trna by neils on 2008-06-20 00:46:10 as **
  • MIRs are classic, tRNA-derived SINEs that amplified before the mammalian radiation.
    Nucleic Acids Res, Vol. 23, No. 1. (11 January 1995), pp. 98-102.
    by AF Smit, AD Riggs
    posted to mir trna by N0131826 on 2007-05-08 00:09:57 as ** along with 3 people scroft praj22 FMoncini
  • Ubiquitous mammalian-wide interspersed repeats (MIRs) are molecular fossils from the mesozoic era.
    Nucleic Acids Res, Vol. 23, No. 1. (11 January 1995), pp. 170-175.
    by J Jurka, E Zietkiewicz, D Labuda
    posted to mir trna by N0131826 on 2007-05-08 00:10:12 as ** along with 1 person FMoncini
  • The RNA polymerase III-dependent family of genes in hemiascomycetes: comparative RNomics, decoding strategies, transcription and evolutionary implications.
    Nucleic Acids Res, Vol. 34, No. 6. (2006), pp. 1816-1835.
    by C Marck, R Kachouri-Lafond, I Lafontaine, E Westhof, B Dujon, H Grosjean
    posted to cluster ncrna polymerase trna by mtagaya on 2006-10-16 10:02:45 as ** along with 1 person Eonwe
  • The genomic organization of dispersed tRNA and 5 S RNA genes in Xenopus laevis.
    J Biol Chem, Vol. 258, No. 12. (25 June 1983), pp. 7402-7410.
    by DS Rosenthal, JL Doering
    posted to cluster genome ncrna trna by mtagaya on 2006-06-15 11:00:29 as **
  • Expression of the clustered mitochondrial tRNA genes in Saccharomyces cerevisiae: transcription and processing of transcripts.
    EMBO J, Vol. 3, No. 6. (June 1984), pp. 1389-1395.
    by C Palleschi, S Francisci, E Zennaro, L Frontali
    posted to transcription trna by mtagaya on 2006-10-25 07:16:46 as **
  • A test of the model that RNA polymerase III transcription is regulated by selective induction of the 110 kDa subunit of TFIIIC.
    Nucleic Acids Res, Vol. 34, No. 11. (2006), pp. 3399-3407.
    by F Innes, B Ramsbottom, RJ White
    posted to ncrna polymerase trna by mtagaya on 2006-09-13 09:01:29 as **
  • Survey and summary: transcription by RNA polymerases I and III.
    Nucleic Acids Res, Vol. 28, No. 6. (15 March 2000), pp. 1283-1298.
    by MR Paule, RJ White
    posted to polymerase rna transcription trna by mtagaya on 2006-09-08 09:15:55 as **
  • Processing and editing of overlapping tRNAs in human mitochondria.
    J Biol Chem, Vol. 273, No. 48. (27 November 1998), pp. 31977-31984.
    by A Reichert, U Rothbauer, M Mörl
    posted to mitochondria ncrna trna by mtagaya on 2006-10-27 11:12:00 as **
  • A human tRNA gene cluster encoding the major and minor valine tRNAs and a lysine tRNA.
    DNA, Vol. 8, No. 7. (September 1989), pp. 457-471.
    by LC Craig, LP Wang, MM Lee, IL Pirtle, RM Pirtle
    posted to cluster ncrna trna by mtagaya on 2006-09-13 09:01:54 as **
  • Mammalian tRNA genes: nucleotide sequence of rat genes for tRNAAsp, tRNAGly and tRNAGlu.
    Nucleic Acids Res, Vol. 9, No. 10. (25 May 1981), pp. 2239-2250.
    by T Sekiya, Y Kuchino, S Nishimura
    posted to cluster ncrna trna by mtagaya on 2006-09-13 09:05:05 as **
  • Intron-dependent enzymatic formation of modified nucleosides in eukaryotic tRNAs: a review.
    Biochimie, Vol. 79, No. 5. (May 1997), pp. 293-302.
    by H Grosjean, Z Szweykowska-Kulinska, Y Motorin, F Fasiolo, G Simos
    posted to trna by mtagaya on 2006-10-05 09:52:07 as **
  • Genes and pseudogenes in a reiterated rat tRNA gene cluster.
    Nucleic Acids Res, Vol. 12, No. 12. (25 June 1984), pp. 4893-4906.
    by A Rosen, S Sarid, V Daniel
    posted to cluster ncrna trna by mtagaya on 2006-09-13 09:03:41 as **
  • Structure and evolution of a mouse tRNA gene cluster encoding tRNAAsp, tRNAGly and tRNAGlu and an unlinked, solitary gene encoding tRNAAsp.
    Nucleic Acids Res, Vol. 11, No. 24. (20 December 1983), pp. 8761-8775.
    by JE Looney, JD Harding
    posted to cluster ncrna trna by mtagaya on 2006-09-13 09:04:18 as **
  • Characterization of a rat tRNA gene cluster containing the genes for tRNAAsp, tRNAGly and tRNAGlu, and pseudogenes.
    Nucleic Acids Res, Vol. 10, No. 14. (24 July 1982), pp. 4441-4448.
    by K Shibuya, S Noguchi, S Nishimura, T Sekiya
    posted to cluster ncrna trna by mtagaya on 2006-09-13 09:05:56 as **
  • Nucleotide sequence and transcription of a human tRNA gene cluster with four genes.
    Gene, Vol. 48, No. 1. (1986), pp. 165-174.
    by YN Chang, IL Pirtle, RM Pirtle
    posted to cluster ncrna trna by mtagaya on 2006-09-13 09:02:35 as **
  • Transcription of E. coli and Euglena chloroplast tRNA gene clusters and processing of polycistronic transcripts in a HeLa cell-free system.
    Cell, Vol. 30, No. 1. (August 1982), pp. 81-92.
    by W Gruissem, DM Prescott, BM Greenberg, RB Hallick
    posted to transcription trna by mtagaya on 2006-10-25 07:29:42 as **
  • Analysis of transcripts of the major cluster of tRNA genes in the mitochondrial genome of S. cerevisiae.
    Nucleic Acids Res, Vol. 15, No. 16. (25 August 1987), pp. 6387-6403.
    by S Francisci, C Palleschi, A Ragnini, L Frontali
    posted to transcription trna by mtagaya on 2006-10-25 07:17:23 as **
  • Characterization of a nucleocapsid-like region and of two distinct primer tRNALys,2 binding sites in the endogenous retrovirus Gypsy.
    Nucleic Acids Res (13 October 2006)
    by Caroline Gabus, Roland Ivanyi-Nagy, Julien Depollier, Alain Bucheton, Alain Pelisson, Jean-Luc L Darlix
    posted to ncrna trna virology by mtagaya on 2006-10-26 09:03:57 as **
  • Two conserved sequence blocks within eukaryotic tRNA genes are major promoter elements.
    Nature, Vol. 294, No. 5842. (17 December 1981), pp. 626-631.
    by G Galli, H Hofstetter, ML Birnstiel
    posted to ncrna polymerase transcription trna by mtagaya on 2006-09-08 09:19:02 as **
  • Initiation of transcription of a mitochondrial tRNA gene cluster in S. cerevisiae.
    Nucleic Acids Res, Vol. 12, No. 19. (11 October 1984), pp. 7317-7326.
    by C Palleschi, S Francisci, MM Bianchi, L Frontali
    posted to transcription trna by mtagaya on 2006-10-25 07:18:16 as **
  • Accurate and efficient 3' processing of U2 small nuclear RNA precursor in a fractionated cytoplasmic extract.
    Mol Cell Biol, Vol. 7, No. 9. (September 1987), pp. 3131-3137.
    by AM Kleinschmidt, T Pederson
    posted to trna u2 by mtagaya on 2006-10-05 09:23:58 as **
  • Nucleotide sequence of a segment of human DNA containing the three tRNA genes.
    Nucleic Acids Res, Vol. 10, No. 22. (25 November 1982), pp. 7313-7322.
    by KL Roy, H Cooke, R Buckland
    posted to cluster ncrna trna by mtagaya on 2006-09-13 09:07:17 as **
  • Characterization of tRNA precursor splicing in mammalian extracts.
    J Biol Chem, Vol. 258, No. 19. (10 October 1983), pp. 11974-11980.
    by FA Laski, AZ Fire, UL RajBhandary, PA Sharp
    posted to splicing trna by mtagaya on 2006-10-05 09:23:24 as **
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