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タグ: thornton-lab [19 articles]

Recent papers classified by the tag thornton-lab.
  • notes The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by CT Porter, GJ Bartlett, JM Thornton
    posted to db thornton-lab by grottenolm on 2008-01-10 16:25:55 as read along with 8 people and 2 groups baaden chrn jwm gbart tny sriram_s massivemayhem siebertm Radiation_Damage Stressosome
  • notes MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by GL Holliday, DE Almonacid, GJ Bartlett, NM O'Boyle, JW Torrance, P Murray-Rust, JB Mitchell, JM Thornton
    posted to thornton-lab by grottenolm on 2008-01-10 13:53:06 as read along with 2 people dullhunk jwm
  • Conformational Diversity of Ligands Bound to Proteins
    Journal of Molecular Biology, Vol. 356, No. 4. (3 March 2006), pp. 928-944.
    by Gareth R Stockwell, Janet M Thornton
    posted to thornton-lab by grottenolm on 2008-01-10 13:57:38 as *** along with 5 people BragilMassoud apaydin kuhn bilab thanatos
  • Understanding the molecular machinery of genetics through 3D structures.
    Nat Rev Genet (27 December 2007)
    by Roman A A Laskowski, Janet M M Thornton
    posted to thornton-lab by grottenolm on 2008-01-10 10:50:59 as **** along with 5 people sebastien_vigneau higueruelo jwm aalibes chad_davis
  • PROCOGNATE: a cognate ligand domain mapping for enzymes
    Nucl. Acids Res. (24 August 2007), gkm611.
    by Matthew Bashton, Irene Nobeli, Janet M Thornton
    posted to thornton-lab by grottenolm on 2008-01-10 11:46:48 as ****
  • Evolution of binding sites for zinc and calcium ions playing structural roles
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by James W Torrance, Malcolm W Macarthur, Janet M Thornton
    posted to thornton-lab by grottenolm on 2008-02-13 12:47:32 as ** along with 2 people tny jwm
  • Evolutionary models for formation of network motifs and modularity in the Saccharomyces transcription factor network.
    PLoS Comput Biol, Vol. 3, No. 10. (26 October 2007), pp. 1993-2002.
    by JJ Ward, JM Thornton
    posted to thornton-lab by grottenolm on 2008-01-10 10:53:43 as **** along with 2 people zwang cabbagezs
  • Towards Fully Automated Structure-based Function Prediction in Structural Genomics: A Case Study
    Journal of Molecular Biology, Vol. 367, No. 5. (13 April 2007), pp. 1511-1522.
    by James D Watson, Steve Sanderson, Alexandra Ezersky, Alexei Savchenko, Aled Edwards, Christine Orengo, Andrzej Joachimiak, Roman A Laskowski, Janet M Thornton
    posted to thornton-lab by grottenolm on 2008-01-10 11:51:21 as *** along with 4 people and 2 groups ana tjimenez nickolay jwm structural_bioinformatics Bioinformatics
  • Analysis of binding site similarity, small-molecule similarity and experimental binding profiles in the human cytosolic sulfotransferase family.
    Bioinformatics, Vol. 23, No. 2. (15 January 2007)
    by RJ Najmanovich, A Allali-Hassani, RJ Morris, L Dombrovsky, PW Pan, M Vedadi, AN Plotnikov, A Edwards, C Arrowsmith, JM Thornton
    posted to thornton-lab by grottenolm on 2008-01-10 11:51:54 as *** along with 1 person nickolay
  • Understanding nature's catalytic toolkit.
    Trends Biochem Sci (5 October 2005)
    by Alex Gutteridge, Janet M M Thornton
    posted to thornton-lab by grottenolm on 2008-01-10 13:58:37 as **** along with 10 people and 4 groups ana jwm Einat alexg gbart eweaver tny noby siebertm sim82 structural_bioinformatics Radiation_Damage Stressosome Bioinformatics
  • Protein Superfamily Evolution and the Last Universal Common Ancestor (LUCA)
    Journal of Molecular Evolution
    by Juan AG Ranea, Antonio Sillero, Janet M Thornton, Christine A Orengo
    posted to thornton-lab by grottenolm on 2008-01-10 13:56:30 as ** along with 5 people and 2 groups ucbcjbm ana barry tny jwm structural_bioinformatics Bioinformatics
  • notes Evolution of enzymes and pathways for the biosynthesis of cofactors.
    Nat Prod Rep, Vol. 24, No. 5. (October 2007), pp. 972-987.
    by GL Holliday, JM Thornton, A Marquet, AG Smith, F Rébeillé, R Mendel, HL Schubert, AD Lawrence, MJ Warren
    posted to thornton-lab by grottenolm on 2008-01-10 11:42:31 as read along with 1 person gemmalholliday
  • notes The Chemistry of Protein Catalysis
    Journal of Molecular Biology, Vol. 372, No. 5. (5 October 2007), pp. 1261-1277.
    by Gemma L Holliday, Daniel E Almonacid, John B Mitchell, Janet M Thornton
    posted to thornton-lab by grottenolm on 2008-01-10 10:55:38 as read along with 7 people and 2 groups barry ucbcjbm cjeans zwang jwm sim82 gemmalholliday structural_bioinformatics Bioinformatics
  • Molecular docking for substrate identification: the short-chain dehydrogenases/reductases.
    J Mol Biol, Vol. 375, No. 3. (18 January 2008), pp. 855-874.
    by AD Favia, I Nobeli, F Glaser, JM Thornton
    posted to thornton-lab by grottenolm on 2008-01-10 10:51:41 as **** along with 2 people ucbcjbm jwm
  • The geometry of interactions between catalytic residues and their substrates.
    J Mol Biol, Vol. 369, No. 4. (15 June 2007), pp. 1140-1152.
    by JW Torrance, GL Holliday, JB Mitchell, JM Thornton
    posted to thornton-lab by grottenolm on 2008-01-10 11:49:47 as read along with 3 people ucbcjbm jwm gemmalholliday
  • notes MACiE: a database of enzyme reaction mechanisms.
    Bioinformatics (27 September 2005)
    by Gemma L L Holliday, Gail J J Bartlett, Daniel E E Almonacid, Noel M M O'boyle, Peter Murray-Rust, Janet M M Thornton, John B O B Mitchell
    posted to thornton-lab by grottenolm on 2008-01-10 13:59:47 as read along with 5 people gbart eweaver tny ucbcjbm gemmalholliday
  • Shape Variation in Protein Binding Pockets and their Ligands.
    J Mol Biol, Vol. 368, No. 1. (20 April 2007), pp. 283-301.
    by A Kahraman, RJ Morris, RA Laskowski, JM Thornton
    posted to thornton-lab by grottenolm on 2008-01-10 11:50:29 as ***** along with 3 people martainn jwm tjimenez
  • Cognate Ligand Domain Mapping for Enzymes.
    J Mol Biol (20 September 2006)
    by Matthew Bashton, Irene Nobeli, Janet M M Thornton
    posted to thornton-lab by grottenolm on 2008-01-10 13:53:59 as *** along with 3 people drastic cdallett massivemayhem
  • notes Chemical Markup, XML, and the World Wide Web. 6. CMLReact, an XML Vocabulary for Chemical Reactions
    J. Chem. Inf. Model., Vol. 46, No. 1. (23 January 2006), pp. 145-157.
    by GL Holliday, P Murray-Rust, HS Rzepa
    posted to thornton-lab by grottenolm on 2008-03-05 11:59:17 as read along with 3 people ucbcjbm dullhunk gemmalholliday
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