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タグ: tf [130 articles]

Recent papers classified by the tag tf.
  • Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data
    BMC Bioinformatics, Vol. 7 (04 July 2006), 330.
    by Seon-Young Kim, Yongsung Kim
    posted to tf promoter microarray mammal human_genome genome expression chip by xwbcn on 2007-01-13 04:28:37 as ** along with 2 people jfr Ao_Li2007
  • Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors
    Nat Genet, Vol. 35, No. 1. (2003), pp. 57-64.
    by Gael Yvert, Rachel B Brem, Jacqueline Whittle, Joshua M Akey, Eric Foss, Erin N Smith, Rachel Mackelprang, Leonid Kruglyak
    posted to tf trans-regulatory yeast by xwbcn on 2007-05-23 09:59:14 as ** along with 3 people and 1 group RMGraze oannes lp2 Regulomics_UCHSC
  • Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots.
    Proc Natl Acad Sci U S A (31 March 2006)
    by Ji-Young Y Lee, Juliette Colinas, Jean Y Y Wang, Daniel Mace, Uwe Ohler, Philip N N Benfey
    posted to arabidopsis microarray mirna motif tf by xwbcn on 2006-04-05 02:16:36 as *** along with 2 people and 1 group cdawson dlmace GIG
  • Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites.
    Proc Natl Acad Sci U S A, Vol. 104, No. 17. (24 April 2007), pp. 7145-7150.
    by X Xie, TS Mikkelsen, A Gnirke, K Lindblad-Toh, M Kellis, ES Lander
    posted to genome_alignment human human_genome mammal motif networks tf by xwbcn on 2007-05-11 09:54:09 as ** along with 4 people bpcusack aprasad olympos rschulz
  • Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster.
    Proc Natl Acad Sci U S A (31 July 2006)
    by Celine Moorman, Ling V V Sun, Junbai Wang, Elzo de Wit, Wendy Talhout, Lucas D D Ward, Frauke Greil, Xiang-Jun J Lu, Kevin P P White, Harmen J J Bussemaker, Bas van Steensel
    posted to interaction pathway tf transcriptome by xwbcn on 2006-10-12 13:20:52 as ** along with 4 people and 4 groups ana indigoviolet johncumbers wrowell structural_bioinformatics Bioinformatics EisenLab Cline_lab
  • Predicting gene expression from sequence.
    Cell, Vol. 117, No. 2. (16 April 2004), pp. 185-198.
    by MA Beer, S Tavazoie
    posted to microarray motif tf by xwbcn on 2006-04-05 03:17:26 as ** along with 7 people and 4 groups ana adepace nickluscombe noano koller jrest phoenixzxl structural_bioinformatics Bioinformatics EisenLab EBI-regulation
  • Identifying regulatory networks by combinatorial analysis of promoter elements.
    Nat Genet, Vol. 29, No. 2. (October 2001), pp. 153-159.
    by Y Pilpel, P Sudarsanam, GM Church
    posted to microarray motif tf by xwbcn on 2006-04-05 03:16:44 as ** along with 7 people and 1 group windman83 ihpark imouthesmp troels_marstrand wnpx noano koller Bioinformatics
  • High-throughput Biochemical Analysis of in-vivo Location Data Reveals Novel Classes of POU5F1(Oct4)/DNA complexes.
    Genome Res (22 January 2008)
    by Dean Tantin, Matt Gemberling, Catherine Callister, Will Fairbrother
    posted to tf pou5f1 methods chip by xingxu on 2008-05-19 20:20:46 as ** along with 2 people maximilianh caseybrown
  • Identification of transcription factor binding sites with variable-order Bayesian networks.
    Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2657-2666.
    by I Ben-Gal, A Shani, A Gohr, J Grau, S Arviv, A Shmilovici, S Posch, I Grosse
    posted to bayesian bayesnet tf by wnpx on 2006-01-05 22:36:49 as ** along with 1 person troels_marstrand
  • ETS transcription factors and regulation of immunity
    Archivum Immunologiae et Therapiae Experimentalis, Vol. 54, No. 3. (23 June 2006), pp. 149-163.
    by Sarah Gallant, Gary Gilkeson
    posted to tf saureus mastitis immunology by waszak on 2008-05-21 16:28:18 as **
  • Design Logic of a Cannabinoid Receptor Signaling Network That Triggers Neurite Outgrowth
    Science, Vol. 320, No. 5878. (16 May 2008), pp. 903-909.
    by Kenneth D Bromberg, Avi Ma'ayan, Susana R Neves, Ravi Iyengar
    posted to tf networks microarray by waszak on 2008-05-17 11:24:08 as ** along with 3 people oelemento AlexanderPico caseybrown
  • NestedMICA: sensitive inference of over-represented motifs in nucleic acid sequence
    Nucleic Acids Research, Vol. 33, No. 5. (2005), pp. 1445-1453.
    by Thomas A Down, Tim J Hubbard
    posted to tf nestedsampling mcmc by waszak on 2008-06-30 01:08:45 as ** along with 3 people and 1 group lyongu dpollard dquest EisenLab
  • The effect of experience on the test-driven development process
    Empirical Software Engineering, Vol. 12, No. 6. (1 December 2007), pp. 593-615.
    by Matthias Müller, Andreas Höfer
    posted to tf testing observatory experiment by smogit on 2008-06-13 15:31:44 as ** along with 1 person fabul
  • Predicted transcription factor binding sites as predictors of operons in Escherichia coli and Streptomyces coelicolor.
    BMC Genomics, Vol. 9 (12 February 2008), 79.
    by Emma Laing, Khushwant Sidhu, Simon J Hubbard
    posted to operons regulation tf tfbs by sdyxz on 2008-02-20 15:08:19 as * along with 1 person msuarezdiez
  • Integrated Assessment and Prediction of Transcription Factor Binding
    PLoS Computational Biology, Vol. 2, No. 6. (1 June 2006), e70.
    by Andreas Beyer, Christopher Workman, Jens Hollunder, Dörte Radke, Ulrich Möller, Thomas Wilhelm, Trey Ideker
    posted to prediction target tf transcription by samal on 2006-08-22 07:03:55 as ** along with 6 people and 1 group jfr balajis wnpx emilyhare reidy Ao_Li2007 EisenLab
  • Transcription Factor Map Alignment of Promoter Regions
    PLoS Computational Biology, Vol. 2, No. 5. (1 May 2006), e49.
    by Enrique Blanco, Xavier Messeguer, Temple F Smith, Roderic Guigó
    posted to algorithm modules reg-class tf by ranb on 2006-05-26 19:54:07 as **** along with 2 people brixtonmc oscarluoinau
  • Model-based identification of cis-acting elements from microarray data
    Genomics, Vol. In Press, Corrected Proof
    by Yunlong Liu, Milton W Taylor, Howard J Edenberg
    posted to algorithm model tf by ranb on 2006-05-30 18:02:55 as *****
  • Assessing computational tools for the discovery of transcription factor binding sites
    Nature Biotechnology, Vol. 23, No. 1. (06 January 2005), pp. 137-144.
    by Martin Tompa, Nan Li, Timothy L Bailey, George M Church, Bart D De Moor, Eleazar Eskin, Alexander V Favorov, Martin C Frith, Yutao Fu, James J Kent, Vsevolod J Makeev, Andrei A Mironov, William S Noble, Giulio Pavesi, Graziano Pesole, Mireille Régnier, Nicolas Simonis, Saurabh Sinha, Gert Thijs, Jacques v van Helden, Mathias Vandenbogaert, Zhiping Weng, Christopher Workman, Chun Ye, Zhou Zhu
    posted to tf tool by ranb on 2006-04-14 02:28:09 as read along with 23 people and 6 groups nuin ep161302 icases ana barry aalibes aprasad jfr tuck chad_davis lyongu tabu dquest neveaire johncumbers noano xiaobeizhao olympos GustavoLacerda nklee mdimon dandaman vietanh0 structural_bioinformatics Biostatistics Computational-Genomics Bioinformatics Neuroscience TNT
  • Expression profiling in primates reveals a rapid evolution of human transcription factors
    Nature, Vol. 440, No. 7081. (March 2006), pp. 242-245.
    by Yoav Gilad, Alicia Oshlack, Gordon K Smyth, Terence P Speed, Kevin P White
    posted to evolution expression primates tf by ranb on 2006-04-14 02:17:30 as read along with 15 people and 4 groups stevanspringer ccots eckart_bindewald dchughes tabu nirfriedman nickluscombe johncumbers djkt nicg mikaelhuss JeffR100 candypmcg emarker emptyhb FAB-lab G4ID EBI-regulation Genetics-of-Gambling
  • Repeated morphological evolution through cis-regulatory changes in a pleiotropic gene
    Nature, Vol. 440, No. 7087., pp. 1050-1053.
    by Benjamin Prud'homme, Nicolas Gompel, Antonis Rokas, Victoria A Kassner, Thomas M Williams, Shu-Dan Yeh, John R True, Sean B Carroll
    posted to phenotype regulation tf by ranb on 2006-04-20 04:56:52 as ** along with 8 people and 1 group RMGraze dpollard balicea tny adepace Garamonfok blobbybirdman emptyhb EisenLab
  • Integrated Assessment and Prediction of Transcription Factor Binding
    PLoS Computational Biology, Vol. preprint, No. 2006. (1 May 2006)
    by Andreas Beyer, Christopher Workman, Jens Hollunder, Dörte Radke, Ulrich Möller, Thomas Wilhelm, Trey G Ideker
    posted to algorithm model prediction tf by ranb on 2006-05-30 18:22:18 as **** along with 2 people alokm brixtonmc
  • Global and Local Architecture of the Mammalian microRNA-Transcription Factor Regulatory Network.
    PLoS Comput Biol, Vol. 3, No. 7. (13 July 2007)
    by Reut Shalgi, Daniel Lieber, Moshe Oren, Yitzhak Pilpel
    posted to factor mirna network tf transcription by rahulthadani on 2007-07-19 05:06:12 as * along with 12 people and 2 groups OriginalLurch jfr andersbj rdiaz sebastien_vigneau ealloza zwang bootsy cabbagezs heliopais ale maralena Bioinformatics microRNA
  • Physics of energetic particles in ITER
    Nuclear Fusion, Vol. 38, No. 9. (1998), pp. 1275-1281.
    by SV Putvinski
    posted to tf ripple particle energetic by qgao on 2008-05-28 03:35:37 as **
  • Alpha particle loss and neutral beam current drive in fusion plasma with central current hole
    Plasma Physics and Controlled Fusion, Vol. 46, No. 7. (2004), pp. S95-S105.
    by K Tobita, T Ozeki, Y Nakamura
    posted to tokamak tf ripple particle loss induced in energetic configuration by advanced by qgao on 2008-05-28 03:08:28 as ****
  • Deregulated homeobox gene expression in cancer: cause or consequence?
    Nat Rev Cancer, Vol. 2, No. 10. (October 2002), pp. 777-785.
    by C Abate-Shen
    posted to tf by nickluscombe on 2007-05-23 13:02:40 as ** along with 1 group EBI-regulation
  • The genesis and evolution of homeobox gene clusters
    Nature Reviews Genetics, Vol. 6, No. 12. (10 November 2005), pp. 881-892.
    by Jordi Garcia-Fernàndez
    posted to tf by nickluscombe on 2007-05-23 13:01:51 as ** along with 7 people and 2 groups brant balicea emilyhare BioMaxi timflutre blobbybirdman blackm0k EisenLab EBI-regulation
  • Transcription factors: the right combination for the DNA lock.
    Curr Biol, Vol. 9, No. 12. (17 June 1999)
    by S Khorasanizadeh, F Rastinejad
    posted to tf by nickluscombe on 2007-05-23 13:00:54 as ** along with 1 group EBI-regulation
  • Homeodomain revisited: a lesson from disease-causing mutations.
    Hum Genet, Vol. 116, No. 6. (May 2005), pp. 433-444.
    by YI Chi
    posted to tf by nickluscombe on 2007-05-23 12:59:31 as ** along with 1 group EBI-regulation
  • LIM-homeodomain genes in mammalian development and human disease.
    Mol Biol Rep, Vol. 32, No. 2. (June 2005), pp. 67-77.
    by CS Hunter, SJ Rhodes
    posted to tf by nickluscombe on 2007-05-23 12:58:08 as ** along with 1 group EBI-regulation
  • Homeodomain interactions.
    Curr Opin Struct Biol, Vol. 6, No. 1. (February 1996), pp. 62-68.
    by C Wolberger
    posted to tf by nickluscombe on 2007-05-23 12:45:40 as ** along with 1 group EBI-regulation
  • Combinatorial transcription factors.
    Curr Opin Genet Dev, Vol. 8, No. 5. (October 1998), pp. 552-559.
    by C Wolberger
    posted to tf by nickluscombe on 2007-05-23 12:44:09 as ** along with 1 group EBI-regulation
  • Multiprotein-DNA complexes in transcriptional regulation.
    Annu Rev Biophys Biomol Struct, Vol. 28 (1999), pp. 29-56.
    by C Wolberger
    posted to tf by nickluscombe on 2007-05-23 12:43:00 as ** along with 1 person and 3 groups barry structural_bioinformatics Bioinformatics EBI-regulation
  • The T-box family
    Genome Biology, Vol. 3, No. 6. (2002), pp. reviews3008.1-reviews3008.7.
    by Val Wilson, Frank Conlon
    posted to tf by nickluscombe on 2007-05-23 12:41:09 as ** along with 1 group EBI-regulation
  • KRAB-containing zinc-finger repressor proteins
    Genome Biology, Vol. 4, No. 10. (2003)
    by Raul Urrutia
    posted to tf by nickluscombe on 2007-05-23 12:40:23 as ** along with 1 group EBI-regulation
  • The AP-2 family of transcription factors.
    Genome Biol, Vol. 6, No. 13. (2005)
    by D Eckert, S Buhl, S Weber, R Jäger, H Schorle
    posted to tf by nickluscombe on 2007-05-23 12:39:26 as ** along with 1 group EBI-regulation
  • Transcriptional activation by recruitment.
    Nature, Vol. 386, No. 6625. (10 April 1997), pp. 569-577.
    by M Ptashne, A Gann
    posted to tf by nickluscombe on 2007-05-23 12:29:19 as ** along with 1 group EBI-regulation
  • Yeast transcriptional regulatory mechanisms.
    Annu Rev Genet, Vol. 29 (1995), pp. 651-674.
    by K Struhl
    posted to tf yeast by nickluscombe on 2007-05-23 12:28:53 as ** along with 1 group EBI-regulation
  • The Evolution of Transcriptional Regulation in Eukaryotes
    Mol Biol Evol, Vol. 20, No. 9. (1 September 2003), pp. 1377-1419.
    by Gregory A Wray, Matthew W Hahn, Ehab Abouheif, James P Balhoff, Margaret Pizer, Matthew V Rockman, Laura A Romano
    posted to evolution tf by nickluscombe on 2007-05-23 12:27:04 as ** along with 7 people and 5 groups emptyhb ana dpollard adepace anatiferous mimulus_99 cisevol structural_bioinformatics Bioinformatics EisenLab EBI-regulation cis-regulatory-evolution
  • Helix-loop-helix proteins: regulators of transcription in eucaryotic organisms.
    Mol Cell Biol, Vol. 20, No. 2. (January 2000), pp. 429-440.
    by ME Massari, C Murre
    posted to tf by nickluscombe on 2007-05-23 12:25:52 as ** along with 3 people and 1 group heliopais tuck balicea EBI-regulation
  • Recognition of specific DNA sequences.
    Mol Cell, Vol. 8, No. 5. (November 2001), pp. 937-946.
    by CW Garvie, C Wolberger
    posted to tf by nickluscombe on 2007-05-23 12:24:41 as ** along with 1 group EBI-regulation
  • Differential expansion of zinc-finger transcription factor loci in homologous human and mouse gene clusters.
    Genome Res, Vol. 13, No. 6A. (June 2003), pp. 1097-1110.
    by M Shannon, AT Hamilton, L Gordon, E Branscomb, L Stubbs
    posted to human tf by nickluscombe on 2006-08-17 14:46:24 as ** along with 1 group EBI-regulation
  • An overview of the basic helix-loop-helix proteins.
    Genome Biol, Vol. 5, No. 6. (2004)
    by S Jones
    posted to tf by nickluscombe on 2007-05-23 12:23:33 as ** along with 1 group EBI-regulation
  • A comprehensive catalog of human KRAB-associated zinc finger genes: insights into the evolutionary history of a large family of transcriptional repressors.
    Genome Res, Vol. 16, No. 5. (May 2006), pp. 669-677.
    by S Huntley, DM Baggott, AT Hamilton, M Tran-Gyamfi, S Yang, J Kim, L Gordon, E Branscomb, L Stubbs
    posted to human tf by nickluscombe on 2006-08-17 14:44:57 as ** along with 1 group EBI-regulation
  • Epigenetic Control of the foxp3 Locus in Regulatory T Cells
    PLoS Biology, Vol. 5, No. 2. (1 February 2007), e38.
    by Stefan Floess, Jennifer Freyer, Christiane Siewert, Udo Baron, Sven Olek, Julia Polansky, Kerstin Schlawe, Hyun-Dong Chang, Tobias Bopp, Edgar Schmitt, Stefan Klein-Hessling, Edgar Serfling, Alf Hamann, Jochen Huehn
    posted to transcription tf regulation mammals by nickluscombe on 2007-01-31 15:47:41 as ** along with 1 group EBI-regulation
  • Transcription factors in hematopoietic malignancies
    Current Opinion in Genetics & Development, Vol. 17, No. 1. (February 2007), pp. 78-83.
    by Sigal Gery, Phillip H Koeffler
    posted to tf cancer by nickluscombe on 2007-02-05 14:07:12 as ** along with 1 group EBI-regulation
  • Genetic reconstruction of a functional transcriptional regulatory network.
    Nat Genet (8 April 2007)
    by Zhanzhi Hu, Patrick J J Killion, Vishwanath R R Iyer
    posted to expression tf yeast by nickluscombe on 2007-06-13 09:45:15 as ** along with 8 people and 6 groups czeller dpollard xico zwang lizabeth dejori xingxu naegele Bioinformatics EisenLab WetBiology EBI-regulation ic4 generif_paper
  • Inferring the role of transcription factors in regulatory networks
    BMC Bioinformatics, Vol. 9 (06 May 2008), 228.
    by Philippe Veber, Carito Guziolowski, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel
    posted to tf regulatory network by maralena on 2008-05-09 07:52:22 as ** along with 4 people isimpson idonaldson heliopais renatomilani
  • A novel C. elegans zinc finger transcription factor, lsy-2, required for the cell type-specific expression of the lsy-6 microRNA.
    Development (16 November 2005)
    by Robert J J Johnston Jr, Oliver Hobert
    posted to tf microrna lsy-6 lsy-2 celegans by maralena on 2008-05-15 08:08:59 as ** along with 1 person and 1 group mortenlindow microRNA
  • Identification of transcription factor contexts in literature using machine learning approaches.
    BMC bioinformatics, Vol. 9 Suppl 3 (2008)
    by H Yang, G Nenadic, JA Keane
    posted to tf text_mining machine_learning literature by maralena on 2008-05-12 13:09:29 as ** along with 2 people alperyilmaz mariakmejia
  • Inhibition of Wnt signaling by the osteoblast-specific transcription factor Osterix.
    Proceedings of the National Academy of Sciences of the United States of America (5 May 2008)
    by Chi Zhang, Kyucheol Cho, Yehong Huang, Jon P P Lyons, Xin Zhou, Krishna Sinha, Pierre D D McCrea, Benoit de Crombrugghe
    posted to wnt tf signaling inhibition by maralena on 2008-05-08 09:22:02 as **
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